Wall clock time and date at job start Tue Mar 31 2020 21:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00243 * 2 1 4 4 C 1.38750 * 120.05409 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94245 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05841 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.10993 * 0.02562 * 6 5 4 8 8 S 1.76198 * 119.97238 * 179.97438 * 7 6 5 9 9 O 1.42091 * 103.00149 * 336.14585 * 8 7 6 10 10 C 1.81407 * 102.99725 * 89.99766 * 8 7 6 11 11 C 1.50703 * 109.46832 * 180.02562 * 10 8 7 12 12 O 1.20824 * 119.99868 * 359.97438 * 11 10 8 13 13 O 1.34232 * 119.99981 * 180.02562 * 11 10 8 14 14 C 1.45193 * 117.00307 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47629 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55091 * 294.88972 * 15 14 13 17 17 H 1.07995 * 120.00548 * 95.15680 * 16 15 14 18 18 C 1.37887 * 119.99607 * 274.88498 * 16 15 14 19 19 N 1.31512 * 119.99742 * 6.38500 * 18 16 15 20 20 Si 1.86792 * 120.00001 * 186.38825 * 18 16 15 21 21 H 1.48497 * 109.47138 * 89.99854 * 20 18 16 22 22 H 1.48507 * 109.46983 * 210.00016 * 20 18 16 23 23 H 1.48507 * 109.47143 * 329.99898 * 20 18 16 24 24 C 1.53001 * 117.49567 * 80.55078 * 15 14 13 25 25 C 1.52997 * 117.50058 * 149.21087 * 15 14 13 26 26 C 1.38166 * 120.05584 * 0.22560 * 7 6 5 27 27 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47346 * 300.00099 * 1 2 3 29 29 H 1.09002 * 109.47366 * 59.99918 * 1 2 3 30 30 H 1.07998 * 120.02986 * 0.05099 * 4 3 2 31 31 H 1.08001 * 119.97084 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.94344 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47313 * 60.00183 * 10 8 7 34 34 H 1.09000 * 109.47226 * 299.99699 * 10 8 7 35 35 H 1.09004 * 109.47351 * 59.98882 * 14 13 11 36 36 H 1.09010 * 109.46838 * 299.99816 * 14 13 11 37 37 H 0.97004 * 120.00151 * 179.97438 * 19 18 16 38 38 H 1.09003 * 117.50064 * 215.00337 * 24 15 14 39 39 H 1.08997 * 117.50444 * 0.02833 * 24 15 14 40 40 H 1.08997 * 117.50286 * 359.97438 * 25 15 14 41 41 H 1.09000 * 117.49777 * 144.98214 * 25 15 14 42 42 H 1.08000 * 120.03373 * 179.74480 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6046 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0021 8 16 5.8155 2.6117 -0.0035 9 8 6.0662 3.8933 -0.5637 10 6 6.2242 2.6338 1.7638 11 6 7.7196 2.7150 1.9325 12 8 8.4360 2.7534 0.9603 13 8 8.2557 2.7435 3.1628 14 6 9.7028 2.8226 3.2496 15 6 10.1251 2.8454 4.7200 16 6 9.6880 4.0564 5.5031 17 1 8.7794 4.0237 6.0858 18 6 10.4513 5.2046 5.4800 19 7 11.4907 5.2872 4.6786 20 14 10.0089 6.6425 6.5872 21 1 10.7103 6.4996 7.8882 22 1 10.4231 7.9125 5.9384 23 1 8.5415 6.6587 6.8151 24 6 10.1794 1.5074 5.4601 25 6 11.4768 2.2235 5.0765 26 6 3.4311 1.2847 -0.0069 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2128 2.3203 -0.0001 31 1 1.3340 4.5113 -0.0011 32 1 3.7923 4.6380 -0.0024 33 1 5.8541 1.7226 2.2338 34 1 5.7585 3.5000 2.2337 35 1 10.0471 3.7330 2.7589 36 1 10.1443 1.9557 2.7578 37 1 12.0274 6.0950 4.6620 38 1 9.8991 1.5031 6.5135 39 1 9.9148 0.6109 4.8994 40 1 12.0651 1.7978 4.2637 41 1 12.0501 2.6906 5.8773 42 1 4.0206 0.3798 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820139051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:33 Heat of formation + Delta-G solvation = -102.555195 kcal Electronic energy + Delta-G solvation = -25877.192193 eV Core-core repulsion = 21915.888217 eV Total energy + Delta-G solvation = -3961.303976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41012 -39.80247 -37.70738 -36.85092 -35.86617 -35.31010 -31.97589 -31.59919 -30.57433 -30.23372 -27.69689 -26.65763 -25.21270 -23.25219 -22.62067 -21.29188 -20.71144 -19.29386 -19.04344 -17.44890 -17.13067 -16.60268 -16.55698 -16.35750 -16.14311 -15.98887 -15.54679 -15.26379 -14.67347 -14.47457 -14.27238 -13.96124 -13.82577 -13.52452 -13.07807 -12.99788 -12.70726 -12.26300 -12.13080 -12.04280 -11.77558 -11.63271 -11.55946 -11.46391 -11.00522 -10.86382 -10.57893 -10.48793 -10.33404 -10.21473 -9.91074 -9.61504 -9.55124 -8.84972 -8.64305 -8.52940 -8.47846 -8.22731 -6.08337 -4.13702 0.50669 1.08058 1.54244 2.50406 2.60182 2.90242 3.27274 3.29150 3.35295 3.37054 3.38472 3.79595 4.38276 4.38279 4.55896 4.67486 4.71480 4.92354 5.00405 5.02624 5.05379 5.08865 5.18250 5.21540 5.39038 5.51253 5.55027 5.84280 5.95410 5.96196 6.02687 6.21289 6.27273 6.31083 6.49901 6.61268 6.70739 6.98527 7.01303 7.17473 7.34219 7.44096 7.85285 8.23711 8.38352 8.88027 9.52364 11.01108 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.002436 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.475160 B =11492.311506 C =11775.567235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.107 3.893 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.089 4.089 7 C -0.437 4.437 8 S 1.390 4.610 9 O -0.826 6.826 10 C -0.471 4.471 11 C 0.484 3.516 12 O -0.522 6.522 13 O -0.330 6.330 14 C 0.113 3.887 15 C 0.036 3.964 16 C -0.492 4.492 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.204 4.204 25 C -0.145 4.145 26 C -0.071 4.071 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.632 -12.119 -10.296 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.062 3.938 4 C -0.193 4.193 5 C -0.115 4.115 6 C -0.108 4.108 7 C -0.532 4.532 8 S 1.582 4.418 9 O -0.822 6.822 10 C -0.604 4.604 11 C 0.327 3.673 12 O -0.414 6.414 13 O -0.244 6.244 14 C 0.040 3.960 15 C 0.036 3.964 16 C -0.529 4.529 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.242 4.242 25 C -0.182 4.182 26 C -0.091 4.091 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.536 -12.106 -11.338 25.628 hybrid contribution -1.548 2.825 1.686 3.636 sum -21.085 -9.281 -9.652 24.978 Atomic orbital electron populations 1.23075 0.78340 1.04144 1.01312 1.86084 1.21388 1.26516 1.88857 1.19112 0.92619 0.84269 0.97847 1.21424 1.00168 0.92566 1.05176 1.21073 0.94726 0.97248 0.98497 1.21143 0.94048 0.98322 0.97279 1.28064 1.20514 0.96249 1.08346 1.70549 0.80179 1.07645 0.83412 1.93101 1.78924 1.43354 1.66794 1.28034 0.96182 1.10964 1.25216 1.22261 0.89596 0.72687 0.82768 1.90666 1.62988 1.47162 1.40558 1.86523 1.27789 1.81269 1.28853 1.23007 0.73137 1.00574 0.99321 1.18775 0.96669 0.91732 0.89273 1.20390 1.08651 0.95392 1.28505 0.91899 1.25024 0.94950 0.98337 0.95190 1.69989 1.17448 1.28034 1.36199 0.86585 0.78878 0.81776 0.80761 1.20500 1.21206 1.19798 1.23010 1.04084 0.96471 1.00606 1.22550 0.90531 1.03022 1.02127 1.20106 0.91278 0.97223 1.00474 0.88016 0.92639 0.92685 0.85219 0.85464 0.85116 0.82964 0.85562 0.90382 0.93829 0.92838 0.90080 0.91406 0.91521 0.89428 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.62 10.50 -19.42 -0.20 -2.82 16 3 C 0.11 0.99 6.69 -39.22 -0.26 0.73 16 4 C -0.17 -1.50 9.04 -39.44 -0.36 -1.86 16 5 C -0.10 -0.93 10.04 -39.60 -0.40 -1.33 16 6 C -0.09 -1.04 9.44 -39.56 -0.37 -1.41 16 7 C -0.44 -4.66 5.61 -39.61 -0.22 -4.88 16 8 S 1.39 16.41 12.68 -107.50 -1.36 15.05 16 9 O -0.83 -14.88 16.89 -35.23 -0.60 -15.48 16 10 C -0.47 -6.19 6.48 36.01 0.23 -5.96 16 11 C 0.48 9.09 7.98 36.01 0.29 9.38 16 12 O -0.52 -10.81 15.61 -18.75 -0.29 -11.10 16 13 O -0.33 -7.21 10.16 -39.26 -0.40 -7.61 16 14 C 0.11 2.68 5.28 37.15 0.20 2.87 16 15 C 0.04 0.90 1.61 -155.67 -0.25 0.65 16 16 C -0.49 -13.54 8.77 -34.44 -0.30 -13.84 16 17 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 18 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 19 N -0.88 -25.15 12.93 55.43 0.72 -24.43 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 24 C -0.20 -4.37 9.96 -26.69 -0.27 -4.64 16 25 C -0.14 -3.33 9.43 -26.69 -0.25 -3.58 16 26 C -0.07 -0.63 9.69 -39.43 -0.38 -1.01 16 27 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.22 7.66 -51.93 -0.40 -0.17 16 29 H 0.05 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.69 7.45 -52.49 -0.39 1.30 16 33 H 0.15 1.37 8.14 -51.92 -0.42 0.95 16 34 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 35 H 0.08 2.07 8.13 -51.93 -0.42 1.65 16 36 H 0.04 0.94 8.09 -51.92 -0.42 0.52 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -36.79 379.38 -8.60 -45.39 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.71 Total: 0.85 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.45 Total: -21.98 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.72 Total: -24.43 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.49 Total: -37.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 16.41 SS G_CDS: -1.36 Total: 15.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.79 -8.60 -45.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820139051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.167 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds