Wall clock time and date at job start Tue Mar 31 2020 21:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00243 * 2 1 4 4 C 1.38750 * 120.05409 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94245 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05841 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.10993 * 0.02562 * 6 5 4 8 8 S 1.76198 * 119.97238 * 179.97438 * 7 6 5 9 9 O 1.42091 * 103.00149 * 336.14585 * 8 7 6 10 10 C 1.81407 * 102.99725 * 89.99766 * 8 7 6 11 11 C 1.50703 * 109.46832 * 180.02562 * 10 8 7 12 12 O 1.20824 * 119.99868 * 359.97438 * 11 10 8 13 13 O 1.34232 * 119.99981 * 180.02562 * 11 10 8 14 14 C 1.45193 * 117.00307 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47629 * 179.97438 * 14 13 11 16 16 C 1.50698 * 115.55091 * 294.88972 * 15 14 13 17 17 H 1.07995 * 120.00548 * 95.15680 * 16 15 14 18 18 C 1.37887 * 119.99607 * 274.88498 * 16 15 14 19 19 N 1.31512 * 119.99742 * 6.38500 * 18 16 15 20 20 Si 1.86792 * 120.00001 * 186.38825 * 18 16 15 21 21 H 1.48497 * 109.47138 * 89.99854 * 20 18 16 22 22 H 1.48507 * 109.46983 * 210.00016 * 20 18 16 23 23 H 1.48507 * 109.47143 * 329.99898 * 20 18 16 24 24 C 1.53001 * 117.49567 * 80.55078 * 15 14 13 25 25 C 1.52997 * 117.50058 * 149.21087 * 15 14 13 26 26 C 1.38166 * 120.05584 * 0.22560 * 7 6 5 27 27 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47346 * 300.00099 * 1 2 3 29 29 H 1.09002 * 109.47366 * 59.99918 * 1 2 3 30 30 H 1.07998 * 120.02986 * 0.05099 * 4 3 2 31 31 H 1.08001 * 119.97084 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.94344 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47313 * 60.00183 * 10 8 7 34 34 H 1.09000 * 109.47226 * 299.99699 * 10 8 7 35 35 H 1.09004 * 109.47351 * 59.98882 * 14 13 11 36 36 H 1.09010 * 109.46838 * 299.99816 * 14 13 11 37 37 H 0.97004 * 120.00151 * 179.97438 * 19 18 16 38 38 H 1.09003 * 117.50064 * 215.00337 * 24 15 14 39 39 H 1.08997 * 117.50444 * 0.02833 * 24 15 14 40 40 H 1.08997 * 117.50286 * 359.97438 * 25 15 14 41 41 H 1.09000 * 117.49777 * 144.98214 * 25 15 14 42 42 H 1.08000 * 120.03373 * 179.74480 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6046 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0021 8 16 5.8155 2.6117 -0.0035 9 8 6.0662 3.8933 -0.5637 10 6 6.2242 2.6338 1.7638 11 6 7.7196 2.7150 1.9325 12 8 8.4360 2.7534 0.9603 13 8 8.2557 2.7435 3.1628 14 6 9.7028 2.8226 3.2496 15 6 10.1251 2.8454 4.7200 16 6 9.6880 4.0564 5.5031 17 1 8.7794 4.0237 6.0858 18 6 10.4513 5.2046 5.4800 19 7 11.4907 5.2872 4.6786 20 14 10.0089 6.6425 6.5872 21 1 10.7103 6.4996 7.8882 22 1 10.4231 7.9125 5.9384 23 1 8.5415 6.6587 6.8151 24 6 10.1794 1.5074 5.4601 25 6 11.4768 2.2235 5.0765 26 6 3.4311 1.2847 -0.0069 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2128 2.3203 -0.0001 31 1 1.3340 4.5113 -0.0011 32 1 3.7923 4.6380 -0.0024 33 1 5.8541 1.7226 2.2338 34 1 5.7585 3.5000 2.2337 35 1 10.0471 3.7330 2.7589 36 1 10.1443 1.9557 2.7578 37 1 12.0274 6.0950 4.6620 38 1 9.8991 1.5031 6.5135 39 1 9.9148 0.6109 4.8994 40 1 12.0651 1.7978 4.2637 41 1 12.0501 2.6906 5.8773 42 1 4.0206 0.3798 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820139051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:32 Heat of formation + Delta-G solvation = -126.478670 kcal Electronic energy + Delta-G solvation = -25878.229593 eV Core-core repulsion = 21915.888217 eV Total energy + Delta-G solvation = -3962.341376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40950 -41.03986 -38.63608 -38.36177 -37.12185 -36.98777 -34.05797 -32.32474 -31.60896 -31.13291 -28.46460 -28.13110 -27.24769 -23.97336 -23.35737 -23.01589 -22.24436 -21.21277 -19.79812 -18.83103 -18.38093 -18.17604 -17.57576 -17.24376 -17.17999 -17.05124 -16.64906 -16.61540 -16.23242 -15.84808 -15.44302 -15.17578 -14.81588 -14.62531 -14.49564 -13.87336 -13.78526 -13.70695 -13.55287 -13.34305 -12.97295 -12.96067 -12.83477 -12.80118 -12.46358 -12.09992 -12.09739 -12.07336 -11.83916 -11.71273 -11.57502 -11.41298 -10.80286 -10.51777 -10.32791 -10.08777 -9.59616 -9.28256 -8.18081 -6.28859 -0.30793 0.34545 0.59782 1.10751 1.36791 1.38040 1.47433 1.57971 1.86749 2.36980 2.38164 2.56065 2.80754 3.11018 3.39376 3.71283 3.77234 3.97856 4.04560 4.10638 4.15346 4.27840 4.39150 4.43359 4.43643 4.45539 4.48826 4.50427 4.65567 4.78593 4.82661 4.90899 4.99336 5.10615 5.20100 5.24899 5.29770 5.44328 5.56158 5.59179 5.65672 5.71338 6.32636 6.39838 6.67211 6.77021 7.39849 8.90669 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.002436 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.475160 B =11492.311506 C =11775.567235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.102 3.898 4 C -0.170 4.170 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.441 4.441 8 S 1.440 4.560 9 O -0.896 6.896 10 C -0.466 4.466 11 C 0.477 3.523 12 O -0.546 6.546 13 O -0.342 6.342 14 C 0.123 3.877 15 C -0.002 4.002 16 C -0.506 4.506 17 H 0.054 0.946 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.270 1.270 24 C -0.172 4.172 25 C -0.147 4.147 26 C -0.068 4.068 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.225 -14.404 -9.843 29.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.189 4.189 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.538 4.538 8 S 1.635 4.365 9 O -0.891 6.891 10 C -0.598 4.598 11 C 0.322 3.678 12 O -0.438 6.438 13 O -0.257 6.257 14 C 0.050 3.950 15 C -0.002 4.002 16 C -0.543 4.543 17 H 0.072 0.928 18 C -0.180 4.180 19 N -0.546 5.546 20 Si 0.775 3.225 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.195 1.195 24 C -0.209 4.209 25 C -0.185 4.185 26 C -0.088 4.088 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.219 0.781 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.124 -14.399 -10.878 28.550 hybrid contribution -0.941 3.424 1.502 3.856 sum -23.065 -10.975 -9.376 27.209 Atomic orbital electron populations 1.23381 0.76472 1.05830 1.02209 1.86079 1.23334 1.25857 1.88555 1.19288 0.92918 0.84915 0.97280 1.21744 1.01670 0.91839 1.03628 1.21266 0.93941 0.98677 0.98235 1.21152 0.95379 0.97802 0.99502 1.27651 1.18982 0.96942 1.10201 1.69750 0.80380 1.04930 0.81465 1.92989 1.81255 1.46075 1.68823 1.28194 0.91834 1.13186 1.26584 1.23230 0.91646 0.71470 0.81491 1.90654 1.64191 1.47996 1.40945 1.86522 1.26614 1.81879 1.30733 1.22625 0.74606 0.99300 0.98504 1.18874 0.98505 0.92879 0.89970 1.20672 1.08304 0.96831 1.28539 0.92784 1.25737 0.95056 1.00756 0.96425 1.70096 1.18433 1.28587 1.37522 0.85684 0.78703 0.78712 0.79376 1.19404 1.21352 1.19466 1.23032 1.01529 0.95633 1.00736 1.22495 0.90592 1.03294 1.02071 1.20469 0.91930 0.97504 0.98896 0.86123 0.91783 0.91679 0.82491 0.83863 0.87534 0.78135 0.85894 0.94566 0.91922 0.93021 0.89684 0.88328 0.90063 0.91373 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.29 10.50 -92.40 -0.97 -5.26 16 3 C 0.10 1.58 6.69 22.51 0.15 1.73 16 4 C -0.17 -2.47 9.04 22.36 0.20 -2.27 16 5 C -0.10 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.12 -2.79 9.44 22.28 0.21 -2.58 16 7 C -0.44 -8.92 5.61 22.25 0.12 -8.79 16 8 S 1.44 33.54 12.68 -56.49 -0.72 32.82 16 9 O -0.90 -33.67 16.89 -148.98 -2.52 -36.18 16 10 C -0.47 -11.69 6.48 71.24 0.46 -11.23 16 11 C 0.48 17.85 7.98 71.24 0.57 18.42 16 12 O -0.55 -22.94 15.61 21.97 0.34 -22.59 16 13 O -0.34 -14.95 10.16 -51.44 -0.52 -15.47 16 14 C 0.12 5.93 5.28 71.98 0.38 6.31 16 15 C 0.00 -0.09 1.61 -52.93 -0.08 -0.17 16 16 C -0.51 -28.16 8.77 25.60 0.22 -27.94 16 17 H 0.05 3.01 7.82 -2.91 -0.02 2.99 16 18 C 0.02 1.16 5.39 84.66 0.46 1.61 16 19 N -0.91 -53.21 12.93 21.45 0.28 -52.94 16 20 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.17 -7.04 9.96 30.62 0.30 -6.73 16 25 C -0.15 -6.69 9.43 30.62 0.29 -6.40 16 26 C -0.07 -1.03 9.69 22.37 0.22 -0.81 16 27 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.28 7.66 -2.39 -0.02 0.27 16 29 H 0.06 0.27 7.66 -2.39 -0.02 0.25 16 30 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 31 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.11 2.96 7.45 -2.91 -0.02 2.93 16 33 H 0.20 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 36 H 0.06 2.70 8.09 -2.38 -0.02 2.68 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -82.49 379.38 3.79 -78.70 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.03 Total: 13.65 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.84 Total: -39.27 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.28 Total: -52.94 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -3.67 Total: -79.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 33.54 SS G_CDS: -0.72 Total: 32.82 kcal Total: -82.49 3.79 -78.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820139051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.778 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds