Wall clock time and date at job start Tue Mar 31 2020 21:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35899 * 117.00120 * 2 1 4 4 C 1.38761 * 120.05430 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94436 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05623 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11067 * 359.97438 * 6 5 4 8 8 S 1.76199 * 119.96962 * 179.97438 * 7 6 5 9 9 O 1.42098 * 102.99440 * 203.84849 * 8 7 6 10 10 C 1.81399 * 102.99888 * 89.99961 * 8 7 6 11 11 C 1.50707 * 109.46766 * 179.97438 * 10 8 7 12 12 O 1.20816 * 119.99921 * 359.97438 * 11 10 8 13 13 O 1.34233 * 119.99647 * 179.97438 * 11 10 8 14 14 C 1.45201 * 116.99927 * 179.97438 * 13 11 10 15 15 C 1.52991 * 109.47372 * 179.97438 * 14 13 11 16 16 C 1.50706 * 115.54726 * 65.10962 * 15 14 13 17 17 H 1.08001 * 120.00215 * 266.11079 * 16 15 14 18 18 C 1.37878 * 119.99824 * 86.11724 * 16 15 14 19 19 N 1.31515 * 119.99739 * 353.69621 * 18 16 15 20 20 Si 1.86800 * 119.99788 * 173.70571 * 18 16 15 21 21 H 1.48499 * 109.47316 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46748 * 119.99688 * 20 18 16 23 23 H 1.48505 * 109.46654 * 239.99323 * 20 18 16 24 24 C 1.52997 * 117.50290 * 279.44348 * 15 14 13 25 25 C 1.53000 * 117.50337 * 210.78158 * 15 14 13 26 26 C 1.38163 * 120.05551 * 0.22941 * 7 6 5 27 27 H 1.09003 * 109.47343 * 299.99524 * 1 2 3 28 28 H 1.09001 * 109.47697 * 59.99481 * 1 2 3 29 29 H 1.09005 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02542 * 0.03479 * 4 3 2 31 31 H 1.07993 * 119.97139 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.94406 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47464 * 59.99667 * 10 8 7 34 34 H 1.09001 * 109.47496 * 299.99578 * 10 8 7 35 35 H 1.08995 * 109.47383 * 300.00648 * 14 13 11 36 36 H 1.09003 * 109.46665 * 60.00216 * 14 13 11 37 37 H 0.97006 * 119.99809 * 180.02562 * 19 18 16 38 38 H 1.08998 * 117.50004 * 359.97438 * 24 15 14 39 39 H 1.08999 * 117.50319 * 145.01617 * 24 15 14 40 40 H 1.08999 * 117.49681 * 214.98472 * 25 15 14 41 41 H 1.09001 * 117.49659 * 359.97438 * 25 15 14 42 42 H 1.07996 * 120.02537 * 179.74319 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5171 -0.0021 8 16 5.8153 2.6120 -0.0049 9 8 6.2017 1.3644 -0.5646 10 6 6.2255 2.6349 1.7620 11 6 7.7211 2.7150 1.9295 12 8 8.4367 2.7522 0.9568 13 8 8.2580 2.7449 3.1594 14 6 9.7054 2.8217 3.2450 15 6 10.1287 2.8465 4.7150 16 6 9.8247 1.5966 5.5001 17 1 8.9084 1.5245 6.0672 18 6 10.7165 0.5450 5.4945 19 7 11.7704 0.5808 4.7086 20 14 10.4277 -0.9304 6.6031 21 1 9.1808 -0.7267 7.3836 22 1 10.2982 -2.1551 5.7733 23 1 11.5747 -1.0821 7.5340 24 6 10.0397 4.1836 5.4534 25 6 11.4062 3.6103 5.0696 26 6 3.4310 1.2849 -0.0059 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2127 2.3203 0.0015 31 1 1.3339 4.5113 0.0000 32 1 3.7921 4.6381 -0.0024 33 1 5.8557 1.7240 2.2327 34 1 5.7600 3.5013 2.2319 35 1 10.1451 1.9533 2.7545 36 1 10.0507 3.7308 2.7525 37 1 12.3976 -0.1592 4.7044 38 1 9.6800 5.0457 4.8918 39 1 9.7617 4.1592 6.5071 40 1 12.0265 3.2088 5.8709 41 1 11.9453 4.0948 4.2555 42 1 4.0206 0.3800 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820139052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:36 Heat of formation + Delta-G solvation = -128.176067 kcal Electronic energy + Delta-G solvation = -25916.254188 eV Core-core repulsion = 21953.839207 eV Total energy + Delta-G solvation = -3962.414981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41651 -41.08218 -38.64051 -38.37536 -37.14052 -37.00171 -34.05985 -32.26732 -31.61288 -31.14928 -28.47317 -28.21370 -27.25379 -23.94650 -23.36793 -23.01148 -22.24579 -21.21776 -19.85557 -18.83437 -18.37748 -18.13704 -17.60245 -17.29722 -17.19834 -16.95670 -16.75492 -16.63089 -16.21128 -15.82788 -15.46240 -15.16010 -14.92298 -14.59235 -14.52562 -13.88621 -13.78277 -13.71039 -13.55504 -13.38703 -12.97751 -12.92433 -12.86991 -12.76295 -12.43700 -12.15497 -12.09754 -12.06971 -11.84066 -11.72128 -11.54532 -11.40756 -10.79819 -10.52427 -10.31104 -10.08933 -9.63345 -9.28362 -8.18946 -6.29595 -0.29060 0.39010 0.63225 1.10097 1.34553 1.37402 1.48090 1.58046 1.87689 2.30779 2.37280 2.60309 2.83091 3.10266 3.39478 3.70835 3.76563 3.98806 4.04785 4.14993 4.17959 4.31947 4.32187 4.38879 4.41525 4.43979 4.50038 4.53328 4.64952 4.65342 4.82390 4.84618 4.99764 5.18294 5.20373 5.28846 5.36236 5.44291 5.59481 5.65693 5.70862 5.71762 6.32176 6.36532 6.66619 6.76629 7.39278 8.89927 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.002586 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.852165 B =10825.305321 C =11767.962338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.351 6.351 3 C 0.089 3.911 4 C -0.170 4.170 5 C -0.091 4.091 6 C -0.065 4.065 7 C -0.442 4.442 8 S 1.443 4.557 9 O -0.903 6.903 10 C -0.466 4.466 11 C 0.477 3.523 12 O -0.546 6.546 13 O -0.342 6.342 14 C 0.123 3.877 15 C -0.003 4.003 16 C -0.505 4.505 17 H 0.054 0.946 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.949 3.051 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.171 4.171 25 C -0.146 4.146 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.193 0.807 33 H 0.118 0.882 34 H 0.206 0.794 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.261 0.739 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 12.672 -9.878 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.265 6.265 3 C 0.043 3.957 4 C -0.189 4.189 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.540 4.540 8 S 1.638 4.362 9 O -0.899 6.899 10 C -0.598 4.598 11 C 0.321 3.679 12 O -0.438 6.438 13 O -0.257 6.257 14 C 0.050 3.950 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.072 0.928 18 C -0.180 4.180 19 N -0.547 5.547 20 Si 0.774 3.226 21 H -0.189 1.189 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.208 4.208 25 C -0.183 4.183 26 C -0.146 4.146 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.176 0.824 31 H 0.194 0.806 32 H 0.210 0.790 33 H 0.136 0.864 34 H 0.223 0.777 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.848 12.380 -10.904 28.998 hybrid contribution -0.462 -3.586 1.479 3.906 sum -24.311 8.794 -9.426 27.517 Atomic orbital electron populations 1.23373 0.76051 1.05556 1.02661 1.86075 1.23960 1.27494 1.89009 1.19327 0.92093 0.85657 0.98609 1.21853 1.01528 0.91985 1.03500 1.21681 0.95051 0.97979 0.96213 1.21461 0.93970 0.97778 0.95243 1.27728 1.19077 0.96759 1.10422 1.69494 0.78850 1.06478 0.81362 1.92999 1.79247 1.48531 1.69107 1.28210 0.92147 1.12813 1.26636 1.23242 0.91666 0.71457 0.81489 1.90652 1.64215 1.48042 1.40903 1.86525 1.26477 1.81993 1.30753 1.22628 0.74584 0.99306 0.98511 1.18877 0.99607 0.91929 0.89954 1.20711 1.05006 0.99563 1.29032 0.92816 1.25729 0.95076 1.00694 0.96459 1.70105 1.13737 1.32700 1.38112 0.85647 0.78584 0.79232 0.79105 1.18898 1.21460 1.19906 1.23036 1.00164 0.96884 1.00730 1.22483 0.90575 1.03228 1.02055 1.20420 0.92844 0.98098 1.03245 0.91144 0.91051 0.86973 0.82411 0.80628 0.79035 0.86379 0.77663 0.94755 0.91778 0.93030 0.88220 0.89696 0.91408 0.90037 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.35 -8.15 10.50 -92.41 -0.97 -9.12 16 3 C 0.09 2.03 6.69 22.51 0.15 2.18 16 4 C -0.17 -2.36 9.04 22.37 0.20 -2.15 16 5 C -0.09 -0.84 10.04 22.25 0.22 -0.61 16 6 C -0.07 -0.69 9.75 22.28 0.22 -0.47 16 7 C -0.44 -8.91 5.61 22.25 0.12 -8.78 16 8 S 1.44 33.74 12.69 -56.49 -0.72 33.02 16 9 O -0.90 -35.48 16.89 -148.98 -2.52 -38.00 16 10 C -0.47 -11.72 6.48 71.24 0.46 -11.26 16 11 C 0.48 17.88 7.98 71.24 0.57 18.45 16 12 O -0.55 -23.01 15.61 21.99 0.34 -22.67 16 13 O -0.34 -14.95 10.16 -51.45 -0.52 -15.48 16 14 C 0.12 5.93 5.29 71.98 0.38 6.31 16 15 C 0.00 -0.16 1.62 -52.93 -0.09 -0.25 16 16 C -0.51 -28.30 8.78 25.60 0.22 -28.07 16 17 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 18 C 0.02 1.17 5.38 84.65 0.46 1.62 16 19 N -0.91 -53.48 12.88 21.45 0.28 -53.21 16 20 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 21 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 C -0.17 -6.96 9.96 30.62 0.30 -6.66 16 25 C -0.15 -6.64 9.37 30.62 0.29 -6.35 16 26 C -0.13 -3.45 9.38 22.37 0.21 -3.24 16 27 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 29 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.16 1.21 6.30 -2.91 -0.02 1.19 16 31 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 32 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.21 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.03 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.06 2.74 8.08 -2.39 -0.02 2.73 16 37 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 38 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.09 3.27 7.45 -2.91 -0.02 3.25 16 Total: -1.00 -88.85 379.28 3.79 -85.06 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.03 Total: 11.41 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.84 Total: -37.96 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.28 Total: -53.21 kcal Atomic # 8 Polarization: -81.60 SS G_CDS: -3.67 Total: -85.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 33.74 SS G_CDS: -0.72 Total: 33.02 kcal Total: -88.85 3.79 -85.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820139052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.111 kcal (2) G-P(sol) polarization free energy of solvation -88.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds