Wall clock time and date at job start Tue Mar 31 2020 21:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 117.00182 * 2 1 4 4 C 1.38754 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94089 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.06025 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10925 * 359.95392 * 6 5 4 8 8 S 1.76202 * 119.97228 * 180.02562 * 7 6 5 9 9 O 1.42103 * 103.00077 * 203.85417 * 8 7 6 10 10 C 1.81396 * 102.99750 * 90.00030 * 8 7 6 11 11 C 1.50706 * 109.46984 * 180.02562 * 10 8 7 12 12 O 1.20829 * 119.99654 * 359.97438 * 11 10 8 13 13 O 1.34225 * 120.00000 * 180.02562 * 11 10 8 14 14 C 1.45197 * 117.00127 * 185.34185 * 13 11 10 15 15 C 1.50705 * 112.85253 * 54.09643 * 14 13 11 16 16 H 1.07997 * 119.99943 * 246.10529 * 15 14 13 17 17 C 1.37872 * 120.00024 * 66.09512 * 15 14 13 18 18 N 1.31520 * 119.99917 * 354.00997 * 17 15 14 19 19 Si 1.86792 * 120.00194 * 174.00580 * 17 15 14 20 20 H 1.48498 * 109.47345 * 90.00343 * 19 17 15 21 21 H 1.48506 * 109.47122 * 210.00355 * 19 17 15 22 22 H 1.48498 * 109.47031 * 330.00488 * 19 17 15 23 23 C 1.53777 * 113.62031 * 185.29526 * 14 13 11 24 24 C 1.53786 * 87.08338 * 89.11235 * 23 14 13 25 25 C 1.53782 * 87.16915 * 25.39555 * 24 23 14 26 26 C 1.38161 * 120.05387 * 0.27931 * 7 6 5 27 27 H 1.09004 * 109.46629 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47249 * 300.00118 * 1 2 3 30 30 H 1.07997 * 120.03221 * 0.03910 * 4 3 2 31 31 H 1.08005 * 119.96970 * 179.97438 * 5 4 3 32 32 H 1.07994 * 119.94554 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47353 * 60.00305 * 10 8 7 34 34 H 1.08997 * 109.47648 * 299.99909 * 10 8 7 35 35 H 0.97001 * 120.00010 * 185.02914 * 18 17 15 36 36 H 1.09009 * 113.60975 * 334.56811 * 23 14 13 37 37 H 1.08997 * 113.69517 * 203.67597 * 23 14 13 38 38 H 1.08998 * 113.61254 * 139.98238 * 24 23 14 39 39 H 1.08995 * 113.61510 * 270.80280 * 24 23 14 40 40 H 1.08993 * 113.61659 * 89.15845 * 25 24 23 41 41 H 1.09002 * 113.60985 * 220.05865 * 25 24 23 42 42 H 1.08004 * 120.02944 * 179.74428 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0017 8 16 5.8155 2.6118 -0.0031 9 8 6.2024 1.3642 -0.5628 10 6 6.2242 2.6344 1.7641 11 6 7.7196 2.7156 1.9328 12 8 8.4360 2.7538 0.9606 13 8 8.2556 2.7445 3.1631 14 6 9.6911 2.9431 3.2522 15 6 10.1585 4.1734 2.5179 16 1 10.7912 4.0754 1.6482 17 6 9.7781 5.4240 2.9563 18 7 8.9143 5.5409 3.9412 19 14 10.4896 6.9522 2.1517 20 1 9.6258 7.3609 1.0150 21 1 10.5514 8.0526 3.1470 22 1 11.8572 6.6581 1.6533 23 6 10.2404 2.8348 4.6844 24 6 10.4113 1.3293 4.4210 25 6 10.5081 1.6793 2.9267 26 6 3.4311 1.2848 -0.0061 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2128 2.3204 0.0016 31 1 1.3341 4.5114 0.0000 32 1 3.7923 4.6380 -0.0024 33 1 5.8541 1.7233 2.2343 34 1 5.7584 3.5007 2.2338 35 1 8.5911 6.4178 4.2013 36 1 9.5022 3.0624 5.4535 37 1 11.1828 3.3618 4.8331 38 1 11.3317 0.9157 4.8331 39 1 9.5310 0.7389 4.6751 40 1 11.5239 1.8901 2.5925 41 1 9.9857 0.9755 2.2788 42 1 4.0206 0.3798 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821006803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:29 Heat of formation + Delta-G solvation = -100.915873 kcal Electronic energy + Delta-G solvation = -26852.136650 eV Core-core repulsion = 22890.903760 eV Total energy + Delta-G solvation = -3961.232890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25270 -39.36108 -37.54420 -37.06056 -35.58823 -34.11127 -32.36717 -31.37439 -30.38696 -29.62287 -27.57121 -26.43076 -24.55176 -23.05377 -22.72569 -22.46287 -20.59418 -18.91531 -18.21931 -17.18249 -17.00005 -16.48813 -16.15170 -16.01971 -15.85498 -15.30365 -15.21815 -14.75541 -14.55421 -14.33796 -14.18969 -13.77894 -13.76128 -13.25926 -12.91388 -12.76905 -12.48604 -12.09257 -12.04284 -11.63067 -11.53163 -11.42653 -11.30871 -11.17907 -11.16282 -10.89397 -10.47901 -10.21881 -10.07764 -9.99804 -9.92568 -9.47780 -9.35208 -8.81602 -8.54504 -8.45441 -8.40464 -8.23231 -6.10442 -4.20680 0.71568 1.24390 1.84367 2.77224 3.08210 3.26400 3.33630 3.35996 3.40034 3.51297 3.87817 4.16711 4.36824 4.52966 4.70278 4.79467 4.81507 5.03860 5.13768 5.18813 5.23186 5.32767 5.46612 5.57543 5.72202 5.73713 5.83058 5.86931 6.02431 6.12598 6.14735 6.17685 6.41327 6.43791 6.45695 6.81408 6.84027 7.15479 7.17023 7.26358 7.50336 7.77541 7.86438 8.29846 8.82586 9.10454 9.47536 10.93778 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003122 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.031041 B = 8965.690530 C = 9807.482212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.108 3.892 4 C -0.178 4.178 5 C -0.099 4.099 6 C -0.078 4.078 7 C -0.433 4.433 8 S 1.387 4.613 9 O -0.834 6.834 10 C -0.466 4.466 11 C 0.496 3.504 12 O -0.506 6.506 13 O -0.334 6.334 14 C 0.232 3.768 15 C -0.518 4.518 16 H 0.069 0.931 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.094 4.094 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.084 4.084 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.148 0.852 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 -2.268 -4.981 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.197 4.197 5 C -0.118 4.118 6 C -0.097 4.097 7 C -0.528 4.528 8 S 1.580 4.420 9 O -0.829 6.829 10 C -0.601 4.601 11 C 0.337 3.663 12 O -0.396 6.396 13 O -0.249 6.249 14 C 0.198 3.802 15 C -0.556 4.556 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.504 5.504 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.132 4.132 24 C -0.190 4.190 25 C -0.191 4.191 26 C -0.104 4.104 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.526 -2.340 -5.814 16.743 hybrid contribution -1.071 -0.786 0.787 1.545 sum -16.598 -3.126 -5.027 17.622 Atomic orbital electron populations 1.23057 0.78507 1.03999 1.01240 1.86106 1.21291 1.26892 1.88891 1.19150 0.92446 0.84328 0.97925 1.21392 0.99979 0.92609 1.05739 1.21089 0.94926 0.97011 0.98735 1.20850 0.93495 0.97454 0.97904 1.28245 1.21033 0.96015 1.07503 1.70635 0.78143 1.08960 0.84273 1.93053 1.76446 1.45996 1.67445 1.27989 0.98594 1.09883 1.23631 1.21567 0.88155 0.73278 0.83278 1.90607 1.62529 1.45973 1.40467 1.86363 1.29113 1.80087 1.29372 1.20731 0.73334 0.92009 0.94138 1.21216 1.31688 0.89350 1.13308 0.91260 1.25090 0.94637 0.99179 0.94259 1.70037 1.29331 1.24066 1.27012 0.86586 0.80131 0.82279 0.79145 1.20193 1.21153 1.19587 1.22724 1.00328 0.92610 0.97528 1.22996 1.00054 0.98271 0.97721 1.23478 1.01314 0.99311 0.95007 1.20486 0.91557 0.98397 0.99948 0.92682 0.88214 0.92659 0.85353 0.85107 0.84032 0.86810 0.83419 0.92747 0.91886 0.89864 0.92894 0.91445 0.89971 0.93135 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.90 10.50 -19.41 -0.20 -4.10 16 3 C 0.11 1.39 6.69 -39.21 -0.26 1.13 16 4 C -0.18 -1.82 9.04 -39.43 -0.36 -2.18 16 5 C -0.10 -0.93 10.04 -39.60 -0.40 -1.32 16 6 C -0.08 -0.80 9.75 -39.56 -0.39 -1.19 16 7 C -0.43 -5.73 5.61 -39.61 -0.22 -5.95 16 8 S 1.39 21.04 12.68 -107.50 -1.36 19.68 16 9 O -0.83 -17.14 16.89 -35.23 -0.60 -17.73 16 10 C -0.47 -7.96 6.48 36.01 0.23 -7.73 16 11 C 0.50 11.39 7.52 36.01 0.27 11.66 16 12 O -0.51 -12.65 14.25 -18.75 -0.27 -12.91 16 13 O -0.33 -8.36 9.89 -39.24 -0.39 -8.75 16 14 C 0.23 5.82 0.35 -90.86 -0.03 5.79 16 15 C -0.52 -13.98 6.83 -34.44 -0.24 -14.22 16 16 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 17 C 0.07 1.94 5.36 -17.82 -0.10 1.85 16 18 N -0.87 -23.32 12.80 55.43 0.71 -22.61 16 19 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.09 -2.15 7.02 -25.92 -0.18 -2.33 16 24 C -0.15 -3.06 8.02 -25.92 -0.21 -3.27 16 25 C -0.15 -3.46 7.10 -25.82 -0.18 -3.64 16 26 C -0.08 -1.24 9.38 -39.43 -0.37 -1.61 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 31 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.11 1.86 8.14 -51.92 -0.42 1.44 16 34 H 0.15 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 36 H 0.06 1.48 8.14 -51.92 -0.42 1.05 16 37 H 0.08 1.88 8.10 -51.93 -0.42 1.46 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.79 8.10 -51.93 -0.42 1.37 16 41 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.14 2.20 7.45 -52.48 -0.39 1.81 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -35.86 371.29 -8.67 -44.54 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.70 Total: 2.78 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.43 Total: -21.83 kcal Atomic # 7 Polarization: -23.32 SS G_CDS: 0.71 Total: -22.61 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.45 Total: -43.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 21.04 SS G_CDS: -1.36 Total: 19.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.86 -8.67 -44.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821006803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.380 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds