Wall clock time and date at job start Tue Mar 31 2020 21:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35894 * 117.00182 * 2 1 4 4 C 1.38754 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94089 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.06025 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10925 * 359.95392 * 6 5 4 8 8 S 1.76202 * 119.97228 * 180.02562 * 7 6 5 9 9 O 1.42103 * 103.00077 * 203.85417 * 8 7 6 10 10 C 1.81396 * 102.99750 * 90.00030 * 8 7 6 11 11 C 1.50706 * 109.46984 * 180.02562 * 10 8 7 12 12 O 1.20829 * 119.99654 * 359.97438 * 11 10 8 13 13 O 1.34225 * 120.00000 * 180.02562 * 11 10 8 14 14 C 1.45197 * 117.00127 * 185.34185 * 13 11 10 15 15 C 1.50705 * 112.85253 * 54.09643 * 14 13 11 16 16 H 1.07997 * 119.99943 * 246.10529 * 15 14 13 17 17 C 1.37872 * 120.00024 * 66.09512 * 15 14 13 18 18 N 1.31520 * 119.99917 * 354.00997 * 17 15 14 19 19 Si 1.86792 * 120.00194 * 174.00580 * 17 15 14 20 20 H 1.48498 * 109.47345 * 90.00343 * 19 17 15 21 21 H 1.48506 * 109.47122 * 210.00355 * 19 17 15 22 22 H 1.48498 * 109.47031 * 330.00488 * 19 17 15 23 23 C 1.53777 * 113.62031 * 185.29526 * 14 13 11 24 24 C 1.53786 * 87.08338 * 89.11235 * 23 14 13 25 25 C 1.53782 * 87.16915 * 25.39555 * 24 23 14 26 26 C 1.38161 * 120.05387 * 0.27931 * 7 6 5 27 27 H 1.09004 * 109.46629 * 60.00345 * 1 2 3 28 28 H 1.09003 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47249 * 300.00118 * 1 2 3 30 30 H 1.07997 * 120.03221 * 0.03910 * 4 3 2 31 31 H 1.08005 * 119.96970 * 179.97438 * 5 4 3 32 32 H 1.07994 * 119.94554 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47353 * 60.00305 * 10 8 7 34 34 H 1.08997 * 109.47648 * 299.99909 * 10 8 7 35 35 H 0.97001 * 120.00010 * 185.02914 * 18 17 15 36 36 H 1.09009 * 113.60975 * 334.56811 * 23 14 13 37 37 H 1.08997 * 113.69517 * 203.67597 * 23 14 13 38 38 H 1.08998 * 113.61254 * 139.98238 * 24 23 14 39 39 H 1.08995 * 113.61510 * 270.80280 * 24 23 14 40 40 H 1.08993 * 113.61659 * 89.15845 * 25 24 23 41 41 H 1.09002 * 113.60985 * 220.05865 * 25 24 23 42 42 H 1.08004 * 120.02944 * 179.74428 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0017 8 16 5.8155 2.6118 -0.0031 9 8 6.2024 1.3642 -0.5628 10 6 6.2242 2.6344 1.7641 11 6 7.7196 2.7156 1.9328 12 8 8.4360 2.7538 0.9606 13 8 8.2556 2.7445 3.1631 14 6 9.6911 2.9431 3.2522 15 6 10.1585 4.1734 2.5179 16 1 10.7912 4.0754 1.6482 17 6 9.7781 5.4240 2.9563 18 7 8.9143 5.5409 3.9412 19 14 10.4896 6.9522 2.1517 20 1 9.6258 7.3609 1.0150 21 1 10.5514 8.0526 3.1470 22 1 11.8572 6.6581 1.6533 23 6 10.2404 2.8348 4.6844 24 6 10.4113 1.3293 4.4210 25 6 10.5081 1.6793 2.9267 26 6 3.4311 1.2848 -0.0061 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2128 2.3204 0.0016 31 1 1.3341 4.5114 0.0000 32 1 3.7923 4.6380 -0.0024 33 1 5.8541 1.7233 2.2343 34 1 5.7584 3.5007 2.2338 35 1 8.5911 6.4178 4.2013 36 1 9.5022 3.0624 5.4535 37 1 11.1828 3.3618 4.8331 38 1 11.3317 0.9157 4.8331 39 1 9.5310 0.7389 4.6751 40 1 11.5239 1.8901 2.5925 41 1 9.9857 0.9755 2.2788 42 1 4.0206 0.3798 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821006803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:28 Heat of formation + Delta-G solvation = -124.430860 kcal Electronic energy + Delta-G solvation = -26853.156336 eV Core-core repulsion = 22890.903760 eV Total energy + Delta-G solvation = -3962.252576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21022 -41.08391 -38.88388 -38.37621 -37.04135 -35.98443 -34.37325 -32.26127 -31.33230 -31.02625 -28.38746 -28.20388 -26.37999 -24.58292 -23.92351 -23.36099 -22.31243 -20.09913 -19.82988 -19.03783 -18.20812 -17.53533 -17.31625 -17.09905 -16.94079 -16.91329 -16.73095 -16.45680 -16.12054 -15.85809 -15.41584 -15.09375 -14.94264 -14.58026 -14.23356 -13.90640 -13.72333 -13.45468 -13.37117 -13.17981 -13.03822 -12.89974 -12.77773 -12.70813 -12.25801 -12.14780 -12.08103 -11.97886 -11.82684 -11.72520 -11.44778 -11.25727 -10.76427 -10.47416 -10.32262 -10.28613 -9.56030 -9.28869 -8.09643 -6.27243 -0.27591 0.37543 0.67459 1.46036 1.48283 1.56640 1.59594 1.64001 2.25846 2.30973 2.47016 2.61414 2.85469 3.19838 3.75588 3.82707 3.95269 3.97969 4.04808 4.12920 4.18927 4.30063 4.33529 4.34762 4.41557 4.50672 4.52052 4.62880 4.66028 4.81947 4.83756 5.02151 5.05006 5.16802 5.28347 5.33513 5.34412 5.50094 5.65127 5.68648 5.78191 5.93939 6.36091 6.40458 6.75676 7.23304 7.44633 8.94218 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003122 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.031041 B = 8965.690530 C = 9807.482212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.347 6.347 3 C 0.093 3.907 4 C -0.169 4.169 5 C -0.090 4.090 6 C -0.073 4.073 7 C -0.441 4.441 8 S 1.427 4.573 9 O -0.897 6.897 10 C -0.462 4.462 11 C 0.482 3.518 12 O -0.534 6.534 13 O -0.348 6.348 14 C 0.209 3.791 15 C -0.539 4.539 16 H 0.048 0.952 17 C 0.038 3.962 18 N -0.888 5.888 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.275 1.275 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.122 4.122 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.267 0.733 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 -0.297 -4.742 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.262 6.262 3 C 0.047 3.953 4 C -0.188 4.188 5 C -0.109 4.109 6 C -0.092 4.092 7 C -0.538 4.538 8 S 1.622 4.378 9 O -0.893 6.893 10 C -0.595 4.595 11 C 0.325 3.675 12 O -0.425 6.425 13 O -0.264 6.264 14 C 0.174 3.826 15 C -0.576 4.576 16 H 0.067 0.933 17 C -0.165 4.165 18 N -0.525 5.525 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.130 4.130 24 C -0.166 4.166 25 C -0.193 4.193 26 C -0.143 4.143 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.179 0.821 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.136 0.864 34 H 0.196 0.804 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.985 -0.381 -5.562 18.830 hybrid contribution -0.496 -1.410 0.680 1.642 sum -18.482 -1.791 -4.882 19.199 Atomic orbital electron populations 1.23391 0.76006 1.05658 1.02659 1.86070 1.23980 1.27177 1.88968 1.19269 0.91955 0.85673 0.98401 1.21835 1.01582 0.91793 1.03566 1.21636 0.94670 0.98242 0.96313 1.21384 0.94290 0.97662 0.95891 1.27751 1.19091 0.96928 1.10048 1.69844 0.79081 1.06775 0.82062 1.92951 1.79139 1.48289 1.68929 1.28068 0.94465 1.11383 1.25631 1.22541 0.90361 0.72214 0.82356 1.90580 1.63898 1.47072 1.40990 1.86338 1.29097 1.80364 1.30570 1.20988 0.73738 0.92399 0.95455 1.21277 1.32251 0.90914 1.13193 0.93350 1.25676 0.94746 1.01371 0.94754 1.70104 1.29849 1.24868 1.27633 0.85732 0.79245 0.79193 0.78698 1.19197 1.20194 1.20027 1.22665 0.99695 0.94735 0.95893 1.22867 1.01941 0.96561 0.95281 1.23463 1.00864 0.98199 0.96733 1.20394 0.92878 0.97827 1.03152 0.91101 0.86714 0.91178 0.82068 0.80807 0.80267 0.86413 0.80386 0.92351 0.92996 0.90063 0.89550 0.90826 0.89713 0.94474 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.35 -8.43 10.50 -92.36 -0.97 -9.40 16 3 C 0.09 2.34 6.69 22.51 0.15 2.49 16 4 C -0.17 -2.86 9.04 22.37 0.20 -2.66 16 5 C -0.09 -1.26 10.04 22.25 0.22 -1.04 16 6 C -0.07 -1.26 9.75 22.28 0.22 -1.04 16 7 C -0.44 -11.41 5.61 22.25 0.12 -11.29 16 8 S 1.43 44.34 12.68 -56.49 -0.72 43.62 16 9 O -0.90 -39.28 16.89 -148.98 -2.52 -41.80 16 10 C -0.46 -15.92 6.48 71.24 0.46 -15.46 16 11 C 0.48 22.73 7.52 71.24 0.54 23.26 16 12 O -0.53 -27.75 14.25 21.96 0.31 -27.44 16 13 O -0.35 -17.77 9.89 -51.36 -0.51 -18.28 16 14 C 0.21 10.66 0.35 -10.95 0.00 10.66 16 15 C -0.54 -29.70 6.83 25.60 0.17 -29.53 16 16 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 17 C 0.04 2.00 5.36 84.65 0.45 2.46 16 18 N -0.89 -47.57 12.80 21.45 0.27 -47.30 16 19 Si 0.95 41.58 29.54 68.60 2.03 43.60 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.09 -4.21 7.02 31.12 0.22 -3.99 16 24 C -0.13 -5.06 8.02 31.12 0.25 -4.81 16 25 C -0.15 -7.09 7.10 31.18 0.22 -6.87 16 26 C -0.12 -3.74 9.38 22.37 0.21 -3.53 16 27 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.64 16 30 H 0.16 1.60 6.30 -2.91 -0.02 1.58 16 31 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.18 4.91 8.14 -2.39 -0.02 4.89 16 35 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 36 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.08 3.68 8.10 -2.39 -0.02 3.66 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.08 3.75 8.10 -2.39 -0.02 3.73 16 41 H 0.04 1.75 8.06 -2.39 -0.02 1.73 16 42 H 0.10 3.64 7.45 -2.91 -0.02 3.61 16 Total: -1.00 -82.03 371.29 3.48 -78.55 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.03 Total: 18.48 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 4.55 Total: -40.04 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.27 Total: -47.30 kcal Atomic # 8 Polarization: -93.23 SS G_CDS: -3.68 Total: -96.91 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 44.34 SS G_CDS: -0.72 Total: 43.62 kcal Total: -82.03 3.48 -78.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821006803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.883 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds