Wall clock time and date at job start Tue Mar 31 2020 20:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31278 * 1 3 3 Si 1.86793 * 120.00252 * 2 1 4 4 H 1.48501 * 109.47233 * 275.00079 * 3 2 1 5 5 H 1.48500 * 109.47252 * 35.00253 * 3 2 1 6 6 H 1.48504 * 109.47257 * 155.00186 * 3 2 1 7 7 C 1.39011 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99980 * 174.82744 * 7 2 1 9 9 N 1.37292 * 119.99984 * 354.82206 * 7 2 1 10 10 C 1.36448 * 126.05530 * 174.81556 * 9 7 2 11 11 C 1.35781 * 107.49825 * 180.02562 * 10 9 7 12 12 N 1.40292 * 126.10298 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00538 * 180.02562 * 12 11 10 14 14 O 1.21405 * 120.00275 * 359.97438 * 13 12 11 15 15 C 1.49307 * 120.00388 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00230 * 6.43715 * 15 13 12 17 17 N 1.34774 * 120.00516 * 186.43280 * 15 13 12 18 18 C 1.47153 * 120.98000 * 6.33917 * 17 15 13 19 19 C 1.53291 * 108.38711 * 230.50891 * 18 17 15 20 20 O 1.42959 * 109.22647 * 307.70173 * 19 18 17 21 21 C 1.42963 * 114.16753 * 62.57570 * 20 19 18 22 22 H 1.08997 * 109.51017 * 57.34775 * 21 20 19 23 23 C 1.50701 * 109.50980 * 177.50073 * 21 20 19 24 24 O 1.20821 * 120.00168 * 4.99564 * 23 21 20 25 25 O 1.34232 * 119.99418 * 185.00321 * 23 21 20 26 26 C 1.47153 * 120.98877 * 186.05896 * 17 15 13 27 27 C 1.40725 * 107.80411 * 0.02562 * 11 10 9 28 28 N 1.30878 * 108.37029 * 359.97438 * 27 11 10 29 29 H 0.97003 * 119.99755 * 359.97438 * 1 2 3 30 30 H 1.07997 * 126.25134 * 0.04710 * 10 9 7 31 31 H 0.97000 * 119.99664 * 0.03440 * 12 11 10 32 32 H 1.09000 * 109.68102 * 350.23655 * 18 17 15 33 33 H 1.09009 * 109.68062 * 110.78617 * 18 17 15 34 34 H 1.09003 * 109.50999 * 67.62296 * 19 18 17 35 35 H 1.09004 * 109.51243 * 187.71810 * 19 18 17 36 36 H 0.96704 * 116.99266 * 179.97438 * 25 23 21 37 37 H 1.09002 * 109.68136 * 249.21651 * 26 17 15 38 38 H 1.09001 * 109.67911 * 9.76139 * 26 17 15 39 39 H 1.07999 * 125.81683 * 180.26180 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6176 0.0000 4 1 2.3887 2.1074 -1.3947 5 1 1.5012 2.6198 0.8031 6 1 3.5933 1.4118 0.5917 7 6 2.0078 -1.2039 -0.0005 8 1 3.0845 -1.2058 -0.0849 9 7 1.3255 -2.3905 0.1062 10 6 1.8680 -3.6395 0.0196 11 6 0.8593 -4.5346 0.1775 12 7 0.9832 -5.9319 0.1562 13 6 -0.1056 -6.7077 0.3264 14 8 -1.1937 -6.1974 0.4987 15 6 0.0263 -8.1947 0.3042 16 8 1.1259 -8.7057 0.2503 17 7 -1.0755 -8.9698 0.3441 18 6 -2.4209 -8.3781 0.2703 19 6 -3.2595 -8.9384 1.4247 20 8 -3.1920 -10.3663 1.4058 21 6 -1.8782 -10.8929 1.6073 22 1 -1.4819 -10.5295 2.5555 23 6 -1.9374 -12.3985 1.6291 24 8 -2.9787 -12.9657 1.3971 25 8 -0.8331 -13.1095 1.9064 26 6 -0.9689 -10.4331 0.4566 27 6 -0.3328 -3.8108 0.3653 28 7 -0.0509 -2.5334 0.3224 29 1 -0.4850 0.8401 0.0004 30 1 2.9095 -3.8733 -0.1443 31 1 1.8526 -6.3396 0.0190 32 1 -2.3506 -7.2941 0.3600 33 1 -2.8850 -8.6389 -0.6810 34 1 -2.8681 -8.5680 2.3722 35 1 -4.2958 -8.6205 1.3096 36 1 -0.9204 -14.0726 1.9090 37 1 -1.2892 -10.8973 -0.4762 38 1 0.0635 -10.7106 0.6696 39 1 -1.3126 -4.2367 0.5231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:13 Heat of formation + Delta-G solvation = -79.238840 kcal Electronic energy + Delta-G solvation = -28761.798901 eV Core-core repulsion = 24287.505535 eV Total energy + Delta-G solvation = -4474.293367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29188 -40.59239 -39.74648 -38.79703 -38.03360 -36.53185 -35.43315 -34.25569 -33.27879 -32.22268 -30.42687 -28.78355 -28.08918 -26.34791 -25.12966 -23.93254 -22.86359 -21.50187 -21.13963 -19.89781 -19.64605 -18.65303 -17.96374 -17.70027 -17.15735 -16.72913 -16.57757 -16.41246 -15.90496 -15.60558 -15.40723 -15.16897 -14.90665 -14.60211 -14.52299 -14.12760 -13.85613 -13.47607 -13.19787 -13.07128 -13.01756 -12.63969 -12.09778 -11.92225 -11.80759 -11.56928 -11.35260 -11.34006 -11.08165 -10.97074 -10.83213 -10.61796 -10.59734 -10.43756 -9.32938 -9.01682 -8.98585 -8.84942 -8.22516 -6.90975 -6.69663 -4.36286 1.39455 1.67742 2.08844 2.26031 2.86217 2.99366 3.04802 3.14474 3.43524 3.57435 3.69420 3.76940 4.11437 4.24780 4.36791 4.43097 4.68498 4.71461 4.79585 4.90512 4.95673 5.00108 5.22883 5.29722 5.54552 5.81791 5.96616 6.01929 6.11208 6.23842 6.55385 6.60914 6.79543 6.87299 6.92035 7.07726 7.44549 7.50341 7.72116 7.92161 8.07234 8.33403 8.57912 9.21265 9.49274 10.26778 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.002132 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.493377 B =13129.570770 C =13722.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.048 3.952 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.322 4.322 8 H 0.119 0.881 9 N -0.135 5.135 10 C -0.075 4.075 11 C -0.076 4.076 12 N -0.572 5.572 13 C 0.488 3.512 14 O -0.513 6.513 15 C 0.520 3.480 16 O -0.522 6.522 17 N -0.589 5.589 18 C 0.012 3.988 19 C 0.053 3.947 20 O -0.360 6.360 21 C 0.090 3.910 22 H 0.105 0.895 23 C 0.490 3.510 24 O -0.489 6.489 25 O -0.509 6.509 26 C 0.090 3.910 27 C -0.022 4.022 28 N -0.262 5.262 29 H 0.277 0.723 30 H 0.150 0.850 31 H 0.411 0.589 32 H 0.178 0.822 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.417 0.583 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -17.883 2.236 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.137 0.863 9 N 0.098 4.902 10 C -0.226 4.226 11 C -0.182 4.182 12 N -0.213 5.213 13 C 0.270 3.730 14 O -0.394 6.394 15 C 0.304 3.696 16 O -0.397 6.397 17 N -0.324 5.324 18 C -0.109 4.109 19 C -0.024 4.024 20 O -0.279 6.279 21 C 0.029 3.971 22 H 0.122 0.878 23 C 0.330 3.670 24 O -0.374 6.374 25 O -0.322 6.322 26 C -0.033 4.033 27 C -0.198 4.198 28 N -0.093 5.093 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.246 0.754 32 H 0.193 0.807 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.277 0.723 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.268 -16.276 2.297 16.593 hybrid contribution 1.240 -1.067 -0.137 1.642 sum -1.028 -17.343 2.160 17.507 Atomic orbital electron populations 1.70177 1.06251 1.28339 1.34480 1.25670 0.95720 1.00440 0.95207 0.85785 0.79558 0.79772 0.78931 1.19565 1.19937 1.18634 1.19946 0.92158 0.80582 1.52751 0.86349 1.44574 1.04959 1.03396 1.37238 1.21323 0.97634 0.85176 1.18514 1.17238 0.95440 0.80351 1.25127 1.42147 1.09927 1.04794 1.64472 1.19511 0.85100 0.86703 0.81730 1.90166 1.25141 1.72993 1.51054 1.20223 0.84024 0.88317 0.77044 1.90747 1.25519 1.75203 1.48273 1.47859 1.07108 1.05752 1.71698 1.24109 0.80371 1.07159 0.99244 1.23181 1.02273 0.78468 0.98459 1.88019 1.24398 1.21976 1.93469 1.21718 0.86694 0.87702 1.00940 0.87774 1.22587 0.81196 0.90118 0.73145 1.90763 1.31404 1.71968 1.43276 1.84489 1.38706 1.26172 1.82859 1.22235 1.02011 0.80940 0.98148 1.24136 0.98106 0.90689 1.06831 1.78240 0.91010 1.15140 1.24894 0.91229 0.83268 0.75363 0.80686 0.90600 0.91791 0.86370 0.72290 0.89638 0.86571 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.42 11.87 55.50 0.66 -19.76 16 2 C 0.05 1.17 5.49 -17.50 -0.10 1.08 16 3 Si 0.94 18.08 29.55 -169.99 -5.02 13.05 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.32 -8.11 10.24 -14.82 -0.15 -8.26 16 8 H 0.12 2.66 7.84 -52.49 -0.41 2.24 16 9 N -0.14 -3.52 3.73 -11.40 -0.04 -3.56 16 10 C -0.07 -1.66 11.50 -16.38 -0.19 -1.85 16 11 C -0.08 -1.63 6.90 -83.92 -0.58 -2.20 16 12 N -0.57 -9.88 5.45 -10.46 -0.06 -9.93 16 13 C 0.49 7.94 7.75 -11.66 -0.09 7.85 16 14 O -0.51 -8.91 10.26 5.45 0.06 -8.86 16 15 C 0.52 7.38 7.76 -11.65 -0.09 7.29 16 16 O -0.52 -8.02 15.99 5.48 0.09 -7.93 16 17 N -0.59 -7.03 3.01 -172.58 -0.52 -7.55 16 18 C 0.01 0.13 6.50 -3.54 -0.02 0.11 16 19 C 0.05 0.51 6.98 37.31 0.26 0.77 16 20 O -0.36 -4.06 9.92 -55.11 -0.55 -4.61 16 21 C 0.09 0.87 3.32 -27.52 -0.09 0.78 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 C 0.49 4.70 7.66 36.01 0.28 4.97 16 24 O -0.49 -6.34 17.27 -25.45 -0.44 -6.78 16 25 O -0.51 -3.26 13.42 -39.26 -0.53 -3.79 16 26 C 0.09 0.90 5.91 -3.32 -0.02 0.88 16 27 C -0.02 -0.52 10.85 -17.02 -0.18 -0.71 16 28 N -0.26 -7.16 10.44 30.81 0.32 -6.84 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.15 2.77 8.06 -52.49 -0.42 2.34 16 31 H 0.41 6.09 8.31 -40.82 -0.34 5.75 16 32 H 0.18 2.25 3.82 -56.56 -0.22 2.03 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.42 0.82 9.10 45.56 0.41 1.24 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.14 7.13 -51.93 -0.37 0.77 16 39 H 0.18 4.05 5.92 -52.49 -0.31 3.74 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -33.64 342.26 -4.76 -38.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.90 Total: 12.29 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -0.98 Total: 10.70 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.36 Total: -47.64 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.37 Total: -31.96 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.64 -4.76 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.838 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds