Wall clock time and date at job start Tue Mar 31 2020 20:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31278 * 1 3 3 Si 1.86793 * 120.00252 * 2 1 4 4 H 1.48501 * 109.47233 * 275.00079 * 3 2 1 5 5 H 1.48500 * 109.47252 * 35.00253 * 3 2 1 6 6 H 1.48504 * 109.47257 * 155.00186 * 3 2 1 7 7 C 1.39011 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99980 * 174.82744 * 7 2 1 9 9 N 1.37292 * 119.99984 * 354.82206 * 7 2 1 10 10 C 1.36448 * 126.05530 * 174.81556 * 9 7 2 11 11 C 1.35781 * 107.49825 * 180.02562 * 10 9 7 12 12 N 1.40292 * 126.10298 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00538 * 180.02562 * 12 11 10 14 14 O 1.21405 * 120.00275 * 359.97438 * 13 12 11 15 15 C 1.49307 * 120.00388 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00230 * 6.43715 * 15 13 12 17 17 N 1.34774 * 120.00516 * 186.43280 * 15 13 12 18 18 C 1.47153 * 120.98000 * 6.33917 * 17 15 13 19 19 C 1.53291 * 108.38711 * 230.50891 * 18 17 15 20 20 O 1.42959 * 109.22647 * 307.70173 * 19 18 17 21 21 C 1.42963 * 114.16753 * 62.57570 * 20 19 18 22 22 H 1.08997 * 109.51017 * 57.34775 * 21 20 19 23 23 C 1.50701 * 109.50980 * 177.50073 * 21 20 19 24 24 O 1.20821 * 120.00168 * 4.99564 * 23 21 20 25 25 O 1.34232 * 119.99418 * 185.00321 * 23 21 20 26 26 C 1.47153 * 120.98877 * 186.05896 * 17 15 13 27 27 C 1.40725 * 107.80411 * 0.02562 * 11 10 9 28 28 N 1.30878 * 108.37029 * 359.97438 * 27 11 10 29 29 H 0.97003 * 119.99755 * 359.97438 * 1 2 3 30 30 H 1.07997 * 126.25134 * 0.04710 * 10 9 7 31 31 H 0.97000 * 119.99664 * 0.03440 * 12 11 10 32 32 H 1.09000 * 109.68102 * 350.23655 * 18 17 15 33 33 H 1.09009 * 109.68062 * 110.78617 * 18 17 15 34 34 H 1.09003 * 109.50999 * 67.62296 * 19 18 17 35 35 H 1.09004 * 109.51243 * 187.71810 * 19 18 17 36 36 H 0.96704 * 116.99266 * 179.97438 * 25 23 21 37 37 H 1.09002 * 109.68136 * 249.21651 * 26 17 15 38 38 H 1.09001 * 109.67911 * 9.76139 * 26 17 15 39 39 H 1.07999 * 125.81683 * 180.26180 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6176 0.0000 4 1 2.3887 2.1074 -1.3947 5 1 1.5012 2.6198 0.8031 6 1 3.5933 1.4118 0.5917 7 6 2.0078 -1.2039 -0.0005 8 1 3.0845 -1.2058 -0.0849 9 7 1.3255 -2.3905 0.1062 10 6 1.8680 -3.6395 0.0196 11 6 0.8593 -4.5346 0.1775 12 7 0.9832 -5.9319 0.1562 13 6 -0.1056 -6.7077 0.3264 14 8 -1.1937 -6.1974 0.4987 15 6 0.0263 -8.1947 0.3042 16 8 1.1259 -8.7057 0.2503 17 7 -1.0755 -8.9698 0.3441 18 6 -2.4209 -8.3781 0.2703 19 6 -3.2595 -8.9384 1.4247 20 8 -3.1920 -10.3663 1.4058 21 6 -1.8782 -10.8929 1.6073 22 1 -1.4819 -10.5295 2.5555 23 6 -1.9374 -12.3985 1.6291 24 8 -2.9787 -12.9657 1.3971 25 8 -0.8331 -13.1095 1.9064 26 6 -0.9689 -10.4331 0.4566 27 6 -0.3328 -3.8108 0.3653 28 7 -0.0509 -2.5334 0.3224 29 1 -0.4850 0.8401 0.0004 30 1 2.9095 -3.8733 -0.1443 31 1 1.8526 -6.3396 0.0190 32 1 -2.3506 -7.2941 0.3600 33 1 -2.8850 -8.6389 -0.6810 34 1 -2.8681 -8.5680 2.3722 35 1 -4.2958 -8.6205 1.3096 36 1 -0.9204 -14.0726 1.9090 37 1 -1.2892 -10.8973 -0.4762 38 1 0.0635 -10.7106 0.6696 39 1 -1.3126 -4.2367 0.5231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:13 Heat of formation + Delta-G solvation = -105.780068 kcal Electronic energy + Delta-G solvation = -28762.949815 eV Core-core repulsion = 24287.505535 eV Total energy + Delta-G solvation = -4475.444281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38089 -41.69197 -41.18036 -39.88471 -39.23712 -37.24441 -36.61115 -35.65552 -34.93413 -33.04353 -32.28071 -30.05546 -29.45312 -27.52331 -26.64618 -25.05765 -23.85185 -22.93878 -22.26902 -21.37066 -21.09277 -19.55136 -19.32123 -18.85443 -18.25878 -17.70304 -17.47660 -17.37920 -17.24992 -17.01458 -16.81590 -16.41747 -15.84046 -15.77265 -15.68182 -15.32373 -15.16295 -14.93770 -14.82919 -14.21925 -13.85754 -13.77205 -13.50212 -13.24997 -12.92321 -12.89013 -12.75151 -12.64684 -12.28655 -12.11108 -12.03771 -11.94409 -11.72823 -11.44729 -11.07009 -10.85726 -10.12815 -10.11772 -9.92871 -8.62808 -8.49309 -6.25208 0.16105 0.86438 1.15536 1.29368 1.42507 1.46894 1.59516 1.71019 1.98896 2.09104 2.31420 2.51534 2.80778 2.93147 3.08390 3.29663 3.37016 3.68942 3.88954 4.04166 4.16257 4.20654 4.40632 4.42996 4.50834 4.53940 4.73152 4.85381 4.94813 4.99034 5.01136 5.27705 5.43971 5.48477 5.76405 5.85419 5.93112 6.17847 6.35029 6.61495 6.71126 6.87207 7.03834 7.42008 7.64468 8.50525 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.002132 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.493377 B =13129.570770 C =13722.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.003 4.003 3 Si 1.016 2.984 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.354 4.354 8 H 0.140 0.860 9 N -0.164 5.164 10 C -0.072 4.072 11 C -0.059 4.059 12 N -0.575 5.575 13 C 0.492 3.508 14 O -0.522 6.522 15 C 0.529 3.471 16 O -0.532 6.532 17 N -0.582 5.582 18 C 0.012 3.988 19 C 0.056 3.944 20 O -0.375 6.375 21 C 0.087 3.913 22 H 0.119 0.881 23 C 0.502 3.498 24 O -0.527 6.527 25 O -0.498 6.498 26 C 0.092 3.908 27 C -0.041 4.041 28 N -0.310 5.310 29 H 0.278 0.722 30 H 0.187 0.813 31 H 0.424 0.576 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.438 0.562 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -19.363 2.388 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.069 4.931 10 C -0.223 4.223 11 C -0.165 4.165 12 N -0.219 5.219 13 C 0.275 3.725 14 O -0.402 6.402 15 C 0.311 3.689 16 O -0.409 6.409 17 N -0.316 5.316 18 C -0.108 4.108 19 C -0.020 4.020 20 O -0.294 6.294 21 C 0.027 3.973 22 H 0.136 0.864 23 C 0.343 3.657 24 O -0.416 6.416 25 O -0.313 6.313 26 C -0.030 4.030 27 C -0.216 4.216 28 N -0.141 5.141 29 H 0.088 0.912 30 H 0.204 0.796 31 H 0.262 0.738 32 H 0.177 0.823 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.301 0.699 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.880 -17.828 2.455 18.018 hybrid contribution 0.765 -0.905 -0.169 1.198 sum -0.114 -18.733 2.285 18.873 Atomic orbital electron populations 1.70336 1.08329 1.29290 1.36852 1.26821 0.96454 1.04196 0.94021 0.84611 0.78482 0.74332 0.79021 1.18930 1.20204 1.16891 1.20605 0.93318 0.81003 1.53541 0.84244 1.44814 1.04685 1.04693 1.38955 1.22025 0.99414 0.84239 1.16653 1.17243 0.94186 0.82267 1.22811 1.42076 1.11113 1.03075 1.65586 1.20033 0.84525 0.87857 0.80109 1.90216 1.25633 1.73864 1.50508 1.19667 0.84503 0.87089 0.77602 1.90752 1.25946 1.74926 1.49244 1.47898 1.06792 1.06622 1.70252 1.24049 0.80121 1.06085 1.00551 1.23243 1.03094 0.77846 0.97841 1.88017 1.25306 1.22577 1.93515 1.21821 0.86078 0.88040 1.01356 0.86386 1.22480 0.81087 0.90060 0.72116 1.90759 1.32900 1.72621 1.45295 1.84450 1.37034 1.27961 1.81879 1.22362 1.02539 0.79247 0.98866 1.24319 0.99242 0.90537 1.07538 1.78129 0.92673 1.16872 1.26460 0.91217 0.79637 0.73813 0.82326 0.89617 0.91444 0.84557 0.69872 0.88743 0.85986 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.33 11.87 21.66 0.26 -45.08 16 2 C 0.00 -0.13 5.49 84.96 0.47 0.34 16 3 Si 1.02 37.13 29.55 68.60 2.03 39.16 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 7 C -0.35 -17.95 10.24 84.02 0.86 -17.09 16 8 H 0.14 6.15 7.84 -2.91 -0.02 6.13 16 9 N -0.16 -8.64 3.73 -189.98 -0.71 -9.34 16 10 C -0.07 -3.17 11.50 83.40 0.96 -2.21 16 11 C -0.06 -2.50 6.90 37.82 0.26 -2.24 16 12 N -0.57 -19.10 5.45 -305.34 -1.66 -20.77 16 13 C 0.49 15.46 7.75 87.23 0.68 16.13 16 14 O -0.52 -17.88 10.26 -3.42 -0.04 -17.92 16 15 C 0.53 14.01 7.76 87.23 0.68 14.69 16 16 O -0.53 -15.16 15.99 -3.30 -0.05 -15.21 16 17 N -0.58 -12.68 3.01 -818.28 -2.47 -15.15 16 18 C 0.01 0.25 6.50 86.35 0.56 0.81 16 19 C 0.06 0.97 6.98 72.08 0.50 1.47 16 20 O -0.38 -7.75 9.92 -129.98 -1.29 -9.04 16 21 C 0.09 1.49 3.32 30.09 0.10 1.59 16 22 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 23 C 0.50 8.57 7.66 71.24 0.55 9.12 16 24 O -0.53 -12.95 17.27 28.39 0.49 -12.46 16 25 O -0.50 -5.02 13.42 -51.43 -0.69 -5.71 16 26 C 0.09 1.62 5.91 86.49 0.51 2.13 16 27 C -0.04 -1.99 10.85 85.44 0.93 -1.07 16 28 N -0.31 -17.49 10.44 -56.43 -0.59 -18.07 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.19 6.48 8.06 -2.91 -0.02 6.45 16 31 H 0.42 11.78 8.31 -92.71 -0.77 11.01 16 32 H 0.16 3.92 3.82 -75.77 -0.29 3.63 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.44 0.53 9.10 -74.05 -0.67 -0.15 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 2.06 7.13 -2.39 -0.02 2.04 16 39 H 0.18 8.50 5.92 -2.91 -0.02 8.48 16 Total: -1.00 -74.50 342.26 1.76 -72.73 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.56 Total: 33.18 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 7.05 Total: 23.68 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.17 Total: -108.41 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -1.58 Total: -60.34 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -74.50 1.76 -72.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.046 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds