Wall clock time and date at job start Tue Mar 31 2020 20:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47445 * 270.00027 * 3 2 1 5 5 H 1.48505 * 109.47105 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47371 * 149.99821 * 3 2 1 7 7 C 1.39011 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99915 * 179.72367 * 7 2 1 9 9 N 1.37295 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.36437 * 126.05616 * 179.44219 * 9 7 2 11 11 C 1.35787 * 107.49910 * 179.89225 * 10 9 7 12 12 N 1.40293 * 126.10010 * 180.13281 * 11 10 9 13 13 C 1.34780 * 120.00000 * 180.24396 * 12 11 10 14 14 O 1.21403 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.49305 * 119.99831 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00358 * 353.53835 * 15 13 12 17 17 N 1.34781 * 119.99887 * 173.54601 * 15 13 12 18 18 C 1.47154 * 120.98349 * 181.29496 * 17 15 13 19 19 C 1.53714 * 108.16206 * 129.42717 * 18 17 15 20 20 O 1.42955 * 109.14661 * 52.54135 * 19 18 17 21 21 C 1.42965 * 114.16400 * 297.28456 * 20 19 18 22 22 H 1.08993 * 109.51451 * 302.65762 * 21 20 19 23 23 C 1.50704 * 109.55438 * 182.53273 * 21 20 19 24 24 O 1.20828 * 119.99622 * 355.22385 * 23 21 20 25 25 O 1.34223 * 120.00062 * 175.23034 * 23 21 20 26 26 C 1.47148 * 120.98040 * 1.57360 * 17 15 13 27 27 C 1.40725 * 107.79889 * 0.36557 * 11 10 9 28 28 N 1.30871 * 108.37470 * 359.76635 * 27 11 10 29 29 H 0.97003 * 119.99853 * 0.02562 * 1 2 3 30 30 H 1.08002 * 126.25035 * 0.02562 * 10 9 7 31 31 H 0.96999 * 120.00346 * 0.24275 * 12 11 10 32 32 H 1.09000 * 109.67799 * 249.20936 * 18 17 15 33 33 H 1.09001 * 109.67913 * 9.76125 * 18 17 15 34 34 H 1.09002 * 109.65390 * 292.57030 * 19 18 17 35 35 H 1.08996 * 109.48281 * 172.40045 * 19 18 17 36 36 H 0.96700 * 117.00127 * 179.97438 * 25 23 21 37 37 H 1.08999 * 109.68553 * 350.23367 * 26 17 15 38 38 H 1.08995 * 109.68473 * 110.75645 * 26 17 15 39 39 H 1.08004 * 125.81071 * 179.81244 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6526 0.7001 6 1 3.5444 1.4401 0.7001 7 6 2.0078 -1.2039 0.0005 8 1 3.0878 -1.2039 -0.0040 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6398 -0.0097 11 6 0.8570 -4.5385 -0.0033 12 7 0.9876 -5.9354 -0.0073 13 6 -0.1118 -6.7150 -0.0049 14 8 -1.2151 -6.2085 0.0003 15 6 0.0272 -8.2016 -0.0087 16 8 1.1231 -8.7083 -0.1321 17 7 -1.0644 -8.9808 0.1249 18 6 -0.9493 -10.4476 0.1525 19 6 -1.7159 -10.9653 1.3801 20 8 -3.0427 -10.4334 1.3629 21 6 -3.1032 -9.0083 1.4593 22 1 -2.6003 -8.6833 2.3700 23 6 -4.5434 -8.5658 1.4943 24 8 -5.4281 -9.3769 1.3554 25 8 -4.8432 -7.2707 1.6796 26 6 -2.4071 -8.3901 0.2414 27 6 -0.3522 -3.8188 0.0028 28 7 -0.0715 -2.5406 0.0051 29 1 -0.4850 0.8401 -0.0004 30 1 2.9301 -3.8701 -0.0189 31 1 1.8691 -6.3401 -0.0119 32 1 -1.3803 -10.8667 -0.7567 33 1 0.1003 -10.7321 0.2268 34 1 -1.2078 -10.6474 2.2905 35 1 -1.7597 -12.0540 1.3488 36 1 -5.7809 -7.0348 1.6943 37 1 -2.3234 -7.3115 0.3747 38 1 -2.9822 -8.6051 -0.6592 39 1 -1.3432 -4.2483 0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:18 Heat of formation + Delta-G solvation = -78.808140 kcal Electronic energy + Delta-G solvation = -29138.088571 eV Core-core repulsion = 24663.813881 eV Total energy + Delta-G solvation = -4474.274690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25678 -40.43482 -39.72219 -38.78840 -38.00254 -36.31288 -35.43433 -34.23736 -33.26149 -32.16674 -30.41201 -28.98062 -28.05573 -25.59423 -25.44206 -24.42094 -22.55254 -21.38227 -21.12219 -19.88328 -19.62511 -18.41856 -17.99252 -17.62324 -17.18147 -16.80959 -16.54146 -16.18324 -15.81326 -15.64058 -15.41447 -15.19652 -14.88961 -14.52178 -14.41535 -14.08197 -13.81695 -13.45181 -13.18068 -13.04792 -12.94077 -12.59555 -12.06501 -11.79331 -11.71299 -11.57175 -11.42991 -11.34561 -11.07006 -10.95927 -10.70546 -10.59956 -10.58314 -10.42524 -9.31568 -9.00221 -8.99064 -8.85781 -8.21380 -6.89019 -6.67184 -4.35084 1.42280 1.86575 2.25161 2.26937 2.87419 2.99759 3.04876 3.15484 3.40034 3.59489 3.74026 3.81873 4.24997 4.26752 4.35797 4.52684 4.60886 4.78401 4.80116 4.85781 4.91768 5.04259 5.23717 5.29276 5.47379 5.71640 5.96278 6.12432 6.24780 6.25489 6.54306 6.62384 6.80769 6.84269 6.92135 7.08966 7.51185 7.67259 7.73218 7.93524 8.08877 8.34516 8.59571 9.22775 9.51335 10.28367 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002639 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.381088 B =10608.133364 C =11942.921476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.321 4.321 8 H 0.119 0.881 9 N -0.136 5.136 10 C -0.076 4.076 11 C -0.076 4.076 12 N -0.573 5.573 13 C 0.485 3.515 14 O -0.511 6.511 15 C 0.521 3.479 16 O -0.523 6.523 17 N -0.589 5.589 18 C 0.069 3.931 19 C 0.052 3.948 20 O -0.360 6.360 21 C 0.088 3.912 22 H 0.103 0.897 23 C 0.493 3.507 24 O -0.497 6.497 25 O -0.501 6.501 26 C 0.035 3.965 27 C -0.022 4.022 28 N -0.260 5.260 29 H 0.277 0.723 30 H 0.149 0.851 31 H 0.411 0.589 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.417 0.583 37 H 0.184 0.816 38 H 0.081 0.919 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 -15.422 2.703 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.098 4.902 10 C -0.228 4.228 11 C -0.181 4.181 12 N -0.214 5.214 13 C 0.266 3.734 14 O -0.391 6.391 15 C 0.304 3.696 16 O -0.398 6.398 17 N -0.324 5.324 18 C -0.053 4.053 19 C -0.025 4.025 20 O -0.278 6.278 21 C 0.028 3.972 22 H 0.121 0.879 23 C 0.333 3.667 24 O -0.383 6.383 25 O -0.313 6.313 26 C -0.086 4.086 27 C -0.198 4.198 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.167 0.833 31 H 0.246 0.754 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.277 0.723 37 H 0.199 0.801 38 H 0.099 0.901 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.364 -14.428 2.585 15.039 hybrid contribution 0.775 -0.348 -0.030 0.850 sum -2.589 -14.777 2.555 15.218 Atomic orbital electron populations 1.70199 1.06180 1.28263 1.34495 1.25672 0.95748 1.00398 0.95306 0.85795 0.79428 0.79708 0.79074 1.19498 1.19994 1.18714 1.19948 0.91806 0.80438 1.53173 0.86373 1.44586 1.04137 1.03393 1.38123 1.21307 0.97011 0.85185 1.19259 1.17244 0.94752 0.80347 1.25804 1.42141 1.08479 1.04773 1.65980 1.19564 0.85267 0.86763 0.81759 1.90208 1.24354 1.73229 1.51353 1.20220 0.83944 0.88275 0.77139 1.90741 1.25327 1.75425 1.48326 1.47866 1.06881 1.06370 1.71269 1.22561 1.03549 0.79511 0.99661 1.23176 0.82363 0.99785 0.97140 1.88010 1.27340 1.17731 1.94746 1.21764 0.90393 0.83557 1.01505 0.87909 1.22476 0.91135 0.80390 0.72680 1.90745 1.49288 1.53998 1.44267 1.84537 1.35735 1.27025 1.83998 1.23863 0.81622 1.06420 0.96740 1.24167 0.97893 0.90747 1.07007 1.78283 0.90042 1.14966 1.25786 0.91266 0.83311 0.75406 0.89820 0.87374 0.91890 0.86552 0.72268 0.80096 0.90102 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.40 11.81 55.50 0.66 -19.75 16 2 C 0.05 1.15 5.50 -17.50 -0.10 1.06 16 3 Si 0.94 18.10 29.55 -169.99 -5.02 13.07 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.32 -8.10 10.25 -14.82 -0.15 -8.25 16 8 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16 9 N -0.14 -3.55 3.73 -11.40 -0.04 -3.59 16 10 C -0.08 -1.69 11.50 -16.38 -0.19 -1.88 16 11 C -0.08 -1.63 6.90 -83.92 -0.58 -2.21 16 12 N -0.57 -9.93 5.45 -10.45 -0.06 -9.99 16 13 C 0.48 7.98 7.77 -11.65 -0.09 7.89 16 14 O -0.51 -9.08 10.18 5.45 0.06 -9.02 16 15 C 0.52 7.41 7.77 -11.65 -0.09 7.32 16 16 O -0.52 -8.00 15.96 5.48 0.09 -7.91 16 17 N -0.59 -7.03 3.01 -172.58 -0.52 -7.55 16 18 C 0.07 0.63 6.66 -3.31 -0.02 0.61 16 19 C 0.05 0.42 7.00 37.53 0.26 0.68 16 20 O -0.36 -4.05 9.93 -55.09 -0.55 -4.59 16 21 C 0.09 0.97 3.30 -27.72 -0.09 0.87 16 22 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 23 C 0.49 5.74 7.66 36.01 0.28 6.02 16 24 O -0.50 -7.20 17.27 -25.45 -0.44 -7.64 16 25 O -0.50 -4.77 13.42 -39.24 -0.53 -5.29 16 26 C 0.04 0.41 5.65 -3.53 -0.02 0.39 16 27 C -0.02 -0.54 10.85 -17.02 -0.18 -0.73 16 28 N -0.26 -7.13 10.39 30.81 0.32 -6.81 16 29 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.15 2.77 8.06 -52.49 -0.42 2.34 16 31 H 0.41 6.10 8.31 -40.82 -0.34 5.76 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 0.96 7.09 -51.93 -0.37 0.59 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.42 2.09 9.10 45.56 0.41 2.50 16 37 H 0.18 2.49 3.96 -56.39 -0.22 2.27 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.18 4.11 5.92 -52.48 -0.31 3.80 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -33.92 342.10 -4.77 -38.69 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -2.91 Total: 13.44 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.98 Total: 11.78 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.36 Total: -47.68 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.37 Total: -34.45 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.92 -4.77 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.118 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds