Wall clock time and date at job start Tue Mar 31 2020 20:49:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31281 * 1
3 3 Si 1.86794 * 120.00294 * 2 1
4 4 H 1.48502 * 109.47445 * 270.00027 * 3 2 1
5 5 H 1.48505 * 109.47105 * 30.00192 * 3 2 1
6 6 H 1.48503 * 109.47371 * 149.99821 * 3 2 1
7 7 C 1.39011 * 119.99792 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99915 * 179.72367 * 7 2 1
9 9 N 1.37295 * 119.99952 * 0.02562 * 7 2 1
10 10 C 1.36437 * 126.05616 * 179.44219 * 9 7 2
11 11 C 1.35787 * 107.49910 * 179.89225 * 10 9 7
12 12 N 1.40293 * 126.10010 * 180.13281 * 11 10 9
13 13 C 1.34780 * 120.00000 * 180.24396 * 12 11 10
14 14 O 1.21403 * 119.99899 * 0.02562 * 13 12 11
15 15 C 1.49305 * 119.99831 * 180.02562 * 13 12 11
16 16 O 1.21368 * 120.00358 * 353.53835 * 15 13 12
17 17 N 1.34781 * 119.99887 * 173.54601 * 15 13 12
18 18 C 1.47154 * 120.98349 * 181.29496 * 17 15 13
19 19 C 1.53714 * 108.16206 * 129.42717 * 18 17 15
20 20 O 1.42955 * 109.14661 * 52.54135 * 19 18 17
21 21 C 1.42965 * 114.16400 * 297.28456 * 20 19 18
22 22 H 1.08993 * 109.51451 * 302.65762 * 21 20 19
23 23 C 1.50704 * 109.55438 * 182.53273 * 21 20 19
24 24 O 1.20828 * 119.99622 * 355.22385 * 23 21 20
25 25 O 1.34223 * 120.00062 * 175.23034 * 23 21 20
26 26 C 1.47148 * 120.98040 * 1.57360 * 17 15 13
27 27 C 1.40725 * 107.79889 * 0.36557 * 11 10 9
28 28 N 1.30871 * 108.37470 * 359.76635 * 27 11 10
29 29 H 0.97003 * 119.99853 * 0.02562 * 1 2 3
30 30 H 1.08002 * 126.25035 * 0.02562 * 10 9 7
31 31 H 0.96999 * 120.00346 * 0.24275 * 12 11 10
32 32 H 1.09000 * 109.67799 * 249.20936 * 18 17 15
33 33 H 1.09001 * 109.67913 * 9.76125 * 18 17 15
34 34 H 1.09002 * 109.65390 * 292.57030 * 19 18 17
35 35 H 1.08996 * 109.48281 * 172.40045 * 19 18 17
36 36 H 0.96700 * 117.00127 * 179.97438 * 25 23 21
37 37 H 1.08999 * 109.68553 * 350.23367 * 26 17 15
38 38 H 1.08995 * 109.68473 * 110.75645 * 26 17 15
39 39 H 1.08004 * 125.81071 * 179.81244 * 27 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3128 0.0000 0.0000
3 14 2.2469 1.6176 0.0000
4 1 2.4944 2.0464 -1.4001
5 1 1.4443 2.6526 0.7001
6 1 3.5444 1.4401 0.7001
7 6 2.0078 -1.2039 0.0005
8 1 3.0878 -1.2039 -0.0040
9 7 1.3213 -2.3929 0.0005
10 6 1.8749 -3.6398 -0.0097
11 6 0.8570 -4.5385 -0.0033
12 7 0.9876 -5.9354 -0.0073
13 6 -0.1118 -6.7150 -0.0049
14 8 -1.2151 -6.2085 0.0003
15 6 0.0272 -8.2016 -0.0087
16 8 1.1231 -8.7083 -0.1321
17 7 -1.0644 -8.9808 0.1249
18 6 -0.9493 -10.4476 0.1525
19 6 -1.7159 -10.9653 1.3801
20 8 -3.0427 -10.4334 1.3629
21 6 -3.1032 -9.0083 1.4593
22 1 -2.6003 -8.6833 2.3700
23 6 -4.5434 -8.5658 1.4943
24 8 -5.4281 -9.3769 1.3554
25 8 -4.8432 -7.2707 1.6796
26 6 -2.4071 -8.3901 0.2414
27 6 -0.3522 -3.8188 0.0028
28 7 -0.0715 -2.5406 0.0051
29 1 -0.4850 0.8401 -0.0004
30 1 2.9301 -3.8701 -0.0189
31 1 1.8691 -6.3401 -0.0119
32 1 -1.3803 -10.8667 -0.7567
33 1 0.1003 -10.7321 0.2268
34 1 -1.2078 -10.6474 2.2905
35 1 -1.7597 -12.0540 1.3488
36 1 -5.7809 -7.0348 1.6943
37 1 -2.3234 -7.3115 0.3747
38 1 -2.9822 -8.6051 -0.6592
39 1 -1.3432 -4.2483 0.0058
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000821324353.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:49:18
Heat of formation + Delta-G solvation = -78.808140 kcal
Electronic energy + Delta-G solvation = -29138.088571 eV
Core-core repulsion = 24663.813881 eV
Total energy + Delta-G solvation = -4474.274690 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.115 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.25678 -40.43482 -39.72219 -38.78840 -38.00254 -36.31288 -35.43433 -34.23736
-33.26149 -32.16674 -30.41201 -28.98062 -28.05573 -25.59423 -25.44206 -24.42094
-22.55254 -21.38227 -21.12219 -19.88328 -19.62511 -18.41856 -17.99252 -17.62324
-17.18147 -16.80959 -16.54146 -16.18324 -15.81326 -15.64058 -15.41447 -15.19652
-14.88961 -14.52178 -14.41535 -14.08197 -13.81695 -13.45181 -13.18068 -13.04792
-12.94077 -12.59555 -12.06501 -11.79331 -11.71299 -11.57175 -11.42991 -11.34561
-11.07006 -10.95927 -10.70546 -10.59956 -10.58314 -10.42524 -9.31568 -9.00221
-8.99064 -8.85781 -8.21380 -6.89019 -6.67184 -4.35084 1.42280 1.86575
2.25161 2.26937 2.87419 2.99759 3.04876 3.15484 3.40034 3.59489
3.74026 3.81873 4.24997 4.26752 4.35797 4.52684 4.60886 4.78401
4.80116 4.85781 4.91768 5.04259 5.23717 5.29276 5.47379 5.71640
5.96278 6.12432 6.24780 6.25489 6.54306 6.62384 6.80769 6.84269
6.92135 7.08966 7.51185 7.67259 7.73218 7.93524 8.08877 8.34516
8.59571 9.22775 9.51335 10.28367
Molecular weight = 338.12amu
Principal moments of inertia in cm(-1)
A = 0.018833 B = 0.002639 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.381088 B =10608.133364 C =11942.921476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.765 5.765
2 C 0.047 3.953
3 Si 0.936 3.064
4 H -0.270 1.270
5 H -0.275 1.275
6 H -0.263 1.263
7 C -0.321 4.321
8 H 0.119 0.881
9 N -0.136 5.136
10 C -0.076 4.076
11 C -0.076 4.076
12 N -0.573 5.573
13 C 0.485 3.515
14 O -0.511 6.511
15 C 0.521 3.479
16 O -0.523 6.523
17 N -0.589 5.589
18 C 0.069 3.931
19 C 0.052 3.948
20 O -0.360 6.360
21 C 0.088 3.912
22 H 0.103 0.897
23 C 0.493 3.507
24 O -0.497 6.497
25 O -0.501 6.501
26 C 0.035 3.965
27 C -0.022 4.022
28 N -0.260 5.260
29 H 0.277 0.723
30 H 0.149 0.851
31 H 0.411 0.589
32 H 0.084 0.916
33 H 0.108 0.892
34 H 0.063 0.937
35 H 0.117 0.883
36 H 0.417 0.583
37 H 0.184 0.816
38 H 0.081 0.919
39 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.539 -15.422 2.703 15.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.391 5.391
2 C -0.171 4.171
3 Si 0.760 3.240
4 H -0.195 1.195
5 H -0.200 1.200
6 H -0.187 1.187
7 C -0.454 4.454
8 H 0.136 0.864
9 N 0.098 4.902
10 C -0.228 4.228
11 C -0.181 4.181
12 N -0.214 5.214
13 C 0.266 3.734
14 O -0.391 6.391
15 C 0.304 3.696
16 O -0.398 6.398
17 N -0.324 5.324
18 C -0.053 4.053
19 C -0.025 4.025
20 O -0.278 6.278
21 C 0.028 3.972
22 H 0.121 0.879
23 C 0.333 3.667
24 O -0.383 6.383
25 O -0.313 6.313
26 C -0.086 4.086
27 C -0.198 4.198
28 N -0.091 5.091
29 H 0.087 0.913
30 H 0.167 0.833
31 H 0.246 0.754
32 H 0.102 0.898
33 H 0.126 0.874
34 H 0.081 0.919
35 H 0.134 0.866
36 H 0.277 0.723
37 H 0.199 0.801
38 H 0.099 0.901
39 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges -3.364 -14.428 2.585 15.039
hybrid contribution 0.775 -0.348 -0.030 0.850
sum -2.589 -14.777 2.555 15.218
Atomic orbital electron populations
1.70199 1.06180 1.28263 1.34495 1.25672 0.95748 1.00398 0.95306
0.85795 0.79428 0.79708 0.79074 1.19498 1.19994 1.18714 1.19948
0.91806 0.80438 1.53173 0.86373 1.44586 1.04137 1.03393 1.38123
1.21307 0.97011 0.85185 1.19259 1.17244 0.94752 0.80347 1.25804
1.42141 1.08479 1.04773 1.65980 1.19564 0.85267 0.86763 0.81759
1.90208 1.24354 1.73229 1.51353 1.20220 0.83944 0.88275 0.77139
1.90741 1.25327 1.75425 1.48326 1.47866 1.06881 1.06370 1.71269
1.22561 1.03549 0.79511 0.99661 1.23176 0.82363 0.99785 0.97140
1.88010 1.27340 1.17731 1.94746 1.21764 0.90393 0.83557 1.01505
0.87909 1.22476 0.91135 0.80390 0.72680 1.90745 1.49288 1.53998
1.44267 1.84537 1.35735 1.27025 1.83998 1.23863 0.81622 1.06420
0.96740 1.24167 0.97893 0.90747 1.07007 1.78283 0.90042 1.14966
1.25786 0.91266 0.83311 0.75406 0.89820 0.87374 0.91890 0.86552
0.72268 0.80096 0.90102 0.80394
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -20.40 11.81 55.50 0.66 -19.75 16
2 C 0.05 1.15 5.50 -17.50 -0.10 1.06 16
3 Si 0.94 18.10 29.55 -169.99 -5.02 13.07 16
4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16
5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16
6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16
7 C -0.32 -8.10 10.25 -14.82 -0.15 -8.25 16
8 H 0.12 2.65 7.83 -52.49 -0.41 2.24 16
9 N -0.14 -3.55 3.73 -11.40 -0.04 -3.59 16
10 C -0.08 -1.69 11.50 -16.38 -0.19 -1.88 16
11 C -0.08 -1.63 6.90 -83.92 -0.58 -2.21 16
12 N -0.57 -9.93 5.45 -10.45 -0.06 -9.99 16
13 C 0.48 7.98 7.77 -11.65 -0.09 7.89 16
14 O -0.51 -9.08 10.18 5.45 0.06 -9.02 16
15 C 0.52 7.41 7.77 -11.65 -0.09 7.32 16
16 O -0.52 -8.00 15.96 5.48 0.09 -7.91 16
17 N -0.59 -7.03 3.01 -172.58 -0.52 -7.55 16
18 C 0.07 0.63 6.66 -3.31 -0.02 0.61 16
19 C 0.05 0.42 7.00 37.53 0.26 0.68 16
20 O -0.36 -4.05 9.93 -55.09 -0.55 -4.59 16
21 C 0.09 0.97 3.30 -27.72 -0.09 0.87 16
22 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16
23 C 0.49 5.74 7.66 36.01 0.28 6.02 16
24 O -0.50 -7.20 17.27 -25.45 -0.44 -7.64 16
25 O -0.50 -4.77 13.42 -39.24 -0.53 -5.29 16
26 C 0.04 0.41 5.65 -3.53 -0.02 0.39 16
27 C -0.02 -0.54 10.85 -17.02 -0.18 -0.73 16
28 N -0.26 -7.13 10.39 30.81 0.32 -6.81 16
29 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16
30 H 0.15 2.77 8.06 -52.49 -0.42 2.34 16
31 H 0.41 6.10 8.31 -40.82 -0.34 5.76 16
32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
33 H 0.11 0.96 7.09 -51.93 -0.37 0.59 16
34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16
36 H 0.42 2.09 9.10 45.56 0.41 2.50 16
37 H 0.18 2.49 3.96 -56.39 -0.22 2.27 16
38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
39 H 0.18 4.11 5.92 -52.48 -0.31 3.80 16
LS Contribution 342.10 15.07 5.16 5.16
Total: -1.00 -33.92 342.10 -4.77 -38.69
By element:
Atomic # 1 Polarization: 16.35 SS G_CDS: -2.91 Total: 13.44 kcal
Atomic # 6 Polarization: 12.75 SS G_CDS: -0.98 Total: 11.78 kcal
Atomic # 7 Polarization: -48.04 SS G_CDS: 0.36 Total: -47.68 kcal
Atomic # 8 Polarization: -33.08 SS G_CDS: -1.37 Total: -34.45 kcal
Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -33.92 -4.77 -38.69 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000821324353.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.118 kcal
(2) G-P(sol) polarization free energy of solvation -33.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.042 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds