Wall clock time and date at job start Tue Mar 31 2020 20:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31281 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47445 * 270.00027 * 3 2 1 5 5 H 1.48505 * 109.47105 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47371 * 149.99821 * 3 2 1 7 7 C 1.39011 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99915 * 179.72367 * 7 2 1 9 9 N 1.37295 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.36437 * 126.05616 * 179.44219 * 9 7 2 11 11 C 1.35787 * 107.49910 * 179.89225 * 10 9 7 12 12 N 1.40293 * 126.10010 * 180.13281 * 11 10 9 13 13 C 1.34780 * 120.00000 * 180.24396 * 12 11 10 14 14 O 1.21403 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.49305 * 119.99831 * 180.02562 * 13 12 11 16 16 O 1.21368 * 120.00358 * 353.53835 * 15 13 12 17 17 N 1.34781 * 119.99887 * 173.54601 * 15 13 12 18 18 C 1.47154 * 120.98349 * 181.29496 * 17 15 13 19 19 C 1.53714 * 108.16206 * 129.42717 * 18 17 15 20 20 O 1.42955 * 109.14661 * 52.54135 * 19 18 17 21 21 C 1.42965 * 114.16400 * 297.28456 * 20 19 18 22 22 H 1.08993 * 109.51451 * 302.65762 * 21 20 19 23 23 C 1.50704 * 109.55438 * 182.53273 * 21 20 19 24 24 O 1.20828 * 119.99622 * 355.22385 * 23 21 20 25 25 O 1.34223 * 120.00062 * 175.23034 * 23 21 20 26 26 C 1.47148 * 120.98040 * 1.57360 * 17 15 13 27 27 C 1.40725 * 107.79889 * 0.36557 * 11 10 9 28 28 N 1.30871 * 108.37470 * 359.76635 * 27 11 10 29 29 H 0.97003 * 119.99853 * 0.02562 * 1 2 3 30 30 H 1.08002 * 126.25035 * 0.02562 * 10 9 7 31 31 H 0.96999 * 120.00346 * 0.24275 * 12 11 10 32 32 H 1.09000 * 109.67799 * 249.20936 * 18 17 15 33 33 H 1.09001 * 109.67913 * 9.76125 * 18 17 15 34 34 H 1.09002 * 109.65390 * 292.57030 * 19 18 17 35 35 H 1.08996 * 109.48281 * 172.40045 * 19 18 17 36 36 H 0.96700 * 117.00127 * 179.97438 * 25 23 21 37 37 H 1.08999 * 109.68553 * 350.23367 * 26 17 15 38 38 H 1.08995 * 109.68473 * 110.75645 * 26 17 15 39 39 H 1.08004 * 125.81071 * 179.81244 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6176 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6526 0.7001 6 1 3.5444 1.4401 0.7001 7 6 2.0078 -1.2039 0.0005 8 1 3.0878 -1.2039 -0.0040 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6398 -0.0097 11 6 0.8570 -4.5385 -0.0033 12 7 0.9876 -5.9354 -0.0073 13 6 -0.1118 -6.7150 -0.0049 14 8 -1.2151 -6.2085 0.0003 15 6 0.0272 -8.2016 -0.0087 16 8 1.1231 -8.7083 -0.1321 17 7 -1.0644 -8.9808 0.1249 18 6 -0.9493 -10.4476 0.1525 19 6 -1.7159 -10.9653 1.3801 20 8 -3.0427 -10.4334 1.3629 21 6 -3.1032 -9.0083 1.4593 22 1 -2.6003 -8.6833 2.3700 23 6 -4.5434 -8.5658 1.4943 24 8 -5.4281 -9.3769 1.3554 25 8 -4.8432 -7.2707 1.6796 26 6 -2.4071 -8.3901 0.2414 27 6 -0.3522 -3.8188 0.0028 28 7 -0.0715 -2.5406 0.0051 29 1 -0.4850 0.8401 -0.0004 30 1 2.9301 -3.8701 -0.0189 31 1 1.8691 -6.3401 -0.0119 32 1 -1.3803 -10.8667 -0.7567 33 1 0.1003 -10.7321 0.2268 34 1 -1.2078 -10.6474 2.2905 35 1 -1.7597 -12.0540 1.3488 36 1 -5.7809 -7.0348 1.6943 37 1 -2.3234 -7.3115 0.3747 38 1 -2.9822 -8.6051 -0.6592 39 1 -1.3432 -4.2483 0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:17 Heat of formation + Delta-G solvation = -105.633749 kcal Electronic energy + Delta-G solvation = -29139.251816 eV Core-core repulsion = 24663.813881 eV Total energy + Delta-G solvation = -4475.437936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39198 -41.65421 -41.15696 -39.91805 -39.20241 -37.22853 -36.61425 -35.64858 -34.92276 -32.99359 -32.27246 -30.13615 -29.54963 -27.18335 -26.36507 -25.74974 -23.63484 -22.86138 -22.26632 -21.35507 -21.06797 -19.48581 -19.31257 -18.93305 -18.28084 -17.78675 -17.44513 -17.35428 -17.23990 -17.05112 -16.72735 -16.27233 -16.04121 -15.74094 -15.60779 -15.36672 -15.08140 -14.85937 -14.81127 -14.32027 -13.81486 -13.63967 -13.48524 -13.24130 -12.96219 -12.91531 -12.72526 -12.61689 -12.33225 -12.08707 -12.07724 -11.95142 -11.65495 -11.44154 -11.05951 -10.83702 -10.16196 -10.11749 -9.93769 -8.61619 -8.47220 -6.24564 0.17436 0.91219 1.16029 1.30523 1.42921 1.49659 1.59480 1.71727 1.99533 2.08920 2.28594 2.52346 2.79732 3.00898 3.09534 3.31831 3.39936 3.71193 3.85026 4.05867 4.12492 4.26346 4.41064 4.43474 4.54505 4.61330 4.68042 4.79456 4.95196 4.99535 5.02914 5.28251 5.44027 5.47551 5.75949 5.81958 5.93470 6.18133 6.35567 6.62156 6.72087 6.89706 7.03999 7.42852 7.65730 8.51663 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002639 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.381088 B =10608.133364 C =11942.921476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.003 4.003 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.246 1.246 7 C -0.353 4.353 8 H 0.140 0.860 9 N -0.164 5.164 10 C -0.073 4.073 11 C -0.059 4.059 12 N -0.574 5.574 13 C 0.488 3.512 14 O -0.523 6.523 15 C 0.529 3.471 16 O -0.531 6.531 17 N -0.581 5.581 18 C 0.067 3.933 19 C 0.052 3.948 20 O -0.375 6.375 21 C 0.090 3.910 22 H 0.116 0.884 23 C 0.499 3.501 24 O -0.529 6.529 25 O -0.500 6.500 26 C 0.039 3.961 27 C -0.042 4.042 28 N -0.308 5.308 29 H 0.277 0.723 30 H 0.187 0.813 31 H 0.424 0.576 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.436 0.564 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -16.935 2.984 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.068 4.932 10 C -0.224 4.224 11 C -0.165 4.165 12 N -0.218 5.218 13 C 0.270 3.730 14 O -0.403 6.403 15 C 0.312 3.688 16 O -0.408 6.408 17 N -0.315 5.315 18 C -0.054 4.054 19 C -0.025 4.025 20 O -0.294 6.294 21 C 0.031 3.969 22 H 0.133 0.867 23 C 0.341 3.659 24 O -0.418 6.418 25 O -0.315 6.315 26 C -0.082 4.082 27 C -0.217 4.217 28 N -0.139 5.139 29 H 0.087 0.913 30 H 0.204 0.796 31 H 0.262 0.738 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.299 0.701 37 H 0.182 0.818 38 H 0.102 0.898 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.941 -15.984 2.873 16.355 hybrid contribution 0.244 -0.125 -0.115 0.297 sum -1.698 -16.109 2.758 16.431 Atomic orbital electron populations 1.70363 1.08270 1.29207 1.36817 1.26821 0.96479 1.04152 0.94097 0.84618 0.78336 0.74267 0.79182 1.19013 1.20168 1.16888 1.20620 0.92994 0.80845 1.53966 0.84224 1.44831 1.03809 1.04704 1.39845 1.22008 0.98883 0.84228 1.17289 1.17251 0.93510 0.82287 1.23476 1.42068 1.09673 1.03047 1.67016 1.20141 0.84703 0.88028 0.80081 1.90252 1.24972 1.74151 1.50903 1.19631 0.84463 0.86965 0.77751 1.90749 1.25666 1.75112 1.49261 1.47920 1.06157 1.07616 1.69788 1.22834 1.04419 0.77183 1.00941 1.23427 0.80913 1.01335 0.96789 1.88014 1.29221 1.17415 1.94758 1.21735 0.89965 0.83857 1.01380 0.86704 1.22601 0.91144 0.80493 0.71708 1.90732 1.50197 1.54878 1.45964 1.84515 1.37639 1.25987 1.83320 1.23669 0.81671 1.05414 0.97494 1.24325 0.99006 0.90623 1.07782 1.78173 0.91733 1.16656 1.27350 0.91271 0.79638 0.73811 0.88661 0.86644 0.91032 0.83546 0.70107 0.81799 0.89787 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.28 11.81 21.67 0.26 -45.02 16 2 C 0.00 -0.16 5.50 84.96 0.47 0.31 16 3 Si 1.02 37.13 29.55 68.60 2.03 39.15 16 4 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 7 C -0.35 -17.94 10.25 84.02 0.86 -17.08 16 8 H 0.14 6.16 7.83 -2.91 -0.02 6.13 16 9 N -0.16 -8.68 3.73 -189.97 -0.71 -9.39 16 10 C -0.07 -3.21 11.50 83.41 0.96 -2.25 16 11 C -0.06 -2.52 6.90 37.83 0.26 -2.26 16 12 N -0.57 -19.20 5.45 -305.33 -1.66 -20.86 16 13 C 0.49 15.54 7.77 87.22 0.68 16.22 16 14 O -0.52 -18.40 10.18 -3.41 -0.03 -18.43 16 15 C 0.53 14.05 7.77 87.22 0.68 14.73 16 16 O -0.53 -15.00 15.96 -3.30 -0.05 -15.06 16 17 N -0.58 -12.65 3.01 -818.27 -2.47 -15.11 16 18 C 0.07 1.03 6.66 86.49 0.58 1.61 16 19 C 0.05 0.67 7.00 72.22 0.51 1.17 16 20 O -0.38 -7.61 9.93 -129.99 -1.29 -8.90 16 21 C 0.09 1.85 3.30 29.95 0.10 1.95 16 22 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 23 C 0.50 11.17 7.66 71.24 0.55 11.72 16 24 O -0.53 -14.98 17.27 28.36 0.49 -14.49 16 25 O -0.50 -9.11 13.42 -51.35 -0.69 -9.80 16 26 C 0.04 0.88 5.65 86.36 0.49 1.36 16 27 C -0.04 -2.06 10.85 85.44 0.93 -1.14 16 28 N -0.31 -17.43 10.39 -56.43 -0.59 -18.02 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.19 6.49 8.06 -2.91 -0.02 6.46 16 31 H 0.42 11.79 8.31 -92.71 -0.77 11.02 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 1.67 7.09 -2.39 -0.02 1.66 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.44 3.99 9.10 -74.06 -0.67 3.32 16 37 H 0.17 4.39 3.96 -73.01 -0.29 4.10 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.18 8.60 5.92 -2.91 -0.02 8.58 16 Total: -1.00 -75.24 342.10 1.77 -73.48 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.56 Total: 36.11 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 7.04 Total: 26.33 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -5.17 Total: -108.40 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -1.58 Total: -66.68 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.15 kcal Total: -75.24 1.77 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.156 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds