Wall clock time and date at job start Tue Mar 31 2020 20:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00148 * 2 1 4 4 O 1.20833 * 119.99740 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00216 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47291 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99872 * 265.27833 * 6 5 3 8 8 H 1.07997 * 119.99805 * 142.28368 * 7 6 5 9 9 C 1.38950 * 119.99630 * 322.27930 * 7 6 5 10 10 N 1.31411 * 119.99445 * 159.01618 * 9 7 6 11 11 Si 1.86799 * 120.00268 * 339.00697 * 9 7 6 12 12 H 1.48495 * 109.47121 * 93.47246 * 11 9 7 13 13 H 1.48498 * 109.46934 * 213.47178 * 11 9 7 14 14 H 1.48499 * 109.47042 * 333.47006 * 11 9 7 15 15 C 1.34771 * 119.99990 * 85.27443 * 6 5 3 16 16 O 1.21292 * 120.00156 * 4.64936 * 15 6 5 17 17 C 1.50698 * 120.00008 * 184.65108 * 15 6 5 18 18 H 1.09004 * 109.47208 * 48.18271 * 17 15 6 19 19 O 1.42909 * 109.47050 * 168.17665 * 17 15 6 20 20 C 1.50693 * 109.47329 * 288.17897 * 17 15 6 21 21 C 1.38254 * 120.00095 * 281.55518 * 20 17 15 22 22 C 1.38215 * 120.00301 * 179.97438 * 21 20 17 23 23 C 1.38258 * 119.99683 * 359.95630 * 22 21 20 24 24 C 1.38215 * 120.00292 * 0.02562 * 23 22 21 25 25 N 1.48019 * 120.00325 * 180.02562 * 24 23 22 26 26 O 1.21798 * 119.99431 * 359.97438 * 25 24 23 27 27 O 1.21792 * 120.00199 * 179.97438 * 25 24 23 28 28 C 1.38211 * 119.99960 * 101.27899 * 20 17 15 29 29 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47818 * 300.00455 * 1 2 3 31 31 H 1.09005 * 109.46627 * 60.00685 * 1 2 3 32 32 H 1.09005 * 109.46845 * 60.00516 * 5 3 2 33 33 H 1.09000 * 109.47232 * 300.00001 * 5 3 2 34 34 H 0.97002 * 119.99526 * 179.97438 * 10 9 7 35 35 H 0.96703 * 113.99722 * 60.00332 * 19 17 15 36 36 H 1.08003 * 119.99843 * 359.97438 * 21 20 17 37 37 H 1.07995 * 120.00194 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00044 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.99946 * 0.02562 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2702 3.3097 -1.1820 8 1 3.9894 4.3425 -1.3263 9 6 4.9241 2.6193 -2.1952 10 7 4.8433 3.0425 -3.4366 11 14 5.9179 1.0897 -1.7926 12 1 5.0650 -0.1138 -1.9630 13 1 7.0849 1.0029 -2.7068 14 1 6.3939 1.1643 -0.3879 15 6 4.0801 3.3530 1.1645 16 8 3.9072 2.7745 2.2164 17 6 4.4051 4.8245 1.1584 18 1 3.7637 5.3353 0.4401 19 8 4.1855 5.3662 2.4624 20 6 5.8482 5.0187 0.7702 21 6 6.8488 4.8060 1.7002 22 6 8.1724 4.9836 1.3441 23 6 8.4958 5.3731 0.0575 24 6 7.4955 5.5853 -0.8724 25 7 7.8417 6.0017 -2.2499 26 8 9.0082 6.1578 -2.5639 27 8 6.9603 6.1883 -3.0694 28 6 6.1717 5.4039 -0.5171 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 5.3000 2.5608 -4.1439 35 1 4.7244 4.9578 3.1538 36 1 6.5962 4.5011 2.7050 37 1 8.9540 4.8179 2.0706 38 1 9.5301 5.5114 -0.2210 39 1 5.3902 5.5661 -1.2447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826101783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:24 Heat of formation + Delta-G solvation = -118.671226 kcal Electronic energy + Delta-G solvation = -30725.678748 eV Core-core repulsion = 26217.382713 eV Total energy + Delta-G solvation = -4508.296034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72710 -40.42558 -39.76933 -38.52562 -36.55713 -36.08561 -35.80870 -35.06966 -32.33300 -31.91852 -31.61472 -29.30267 -27.30688 -26.24598 -26.15242 -24.85023 -22.61551 -21.79879 -21.02666 -19.67314 -18.79157 -18.22302 -18.13864 -17.52948 -17.04702 -17.01599 -16.57834 -16.05694 -15.96320 -15.80707 -15.41972 -15.17444 -14.65679 -14.04079 -13.96936 -13.44633 -13.39147 -13.13049 -13.06621 -12.69598 -12.54894 -12.14793 -12.03653 -11.98066 -11.74077 -11.44325 -11.20159 -11.07796 -10.85300 -10.71535 -10.65850 -10.59462 -10.47125 -10.29235 -10.08879 -9.58118 -9.36726 -9.27443 -8.65040 -8.23603 -6.77769 -4.42702 0.21878 1.15884 1.70824 1.84968 2.68826 2.73998 2.79795 2.99121 3.02406 3.32858 3.53472 3.78008 3.90820 4.48475 4.63109 4.63901 4.69870 4.89758 5.03921 5.17939 5.24792 5.30558 5.34450 5.35370 5.43041 5.56953 5.68051 5.69516 5.73203 5.78961 6.06855 6.08684 6.32052 6.52368 6.69743 6.85016 6.86241 7.60754 7.71066 7.83576 8.10847 8.22302 8.51642 8.87718 9.17309 10.29513 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.005169 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.071482 B = 5415.244977 C = 6523.490328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.488 6.488 5 C 0.104 3.896 6 N -0.436 5.436 7 C -0.362 4.362 8 H 0.112 0.888 9 C 0.075 3.925 10 N -0.821 5.821 11 Si 0.850 3.150 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.255 1.255 15 C 0.470 3.530 16 O -0.581 6.581 17 C 0.154 3.846 18 H 0.136 0.864 19 O -0.535 6.535 20 C -0.096 4.096 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.061 4.061 24 C -0.050 4.050 25 N 0.031 4.969 26 O -0.191 6.191 27 O -0.133 6.133 28 C 0.003 3.997 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.282 0.718 35 H 0.376 0.624 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -1.117 7.342 7.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.373 6.373 5 C -0.021 4.021 6 N -0.157 5.157 7 C -0.488 4.488 8 H 0.129 0.871 9 C -0.137 4.137 10 N -0.452 5.452 11 Si 0.676 3.324 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.179 1.179 15 C 0.259 3.741 16 O -0.465 6.465 17 C 0.092 3.908 18 H 0.153 0.847 19 O -0.340 6.340 20 C -0.098 4.098 21 C -0.081 4.081 22 C -0.146 4.146 23 C -0.080 4.080 24 C -0.133 4.133 25 N 0.550 4.450 26 O -0.399 6.399 27 O -0.356 6.356 28 C -0.016 4.016 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.225 0.775 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.062 -0.921 7.973 8.287 hybrid contribution 0.732 -1.250 -0.418 1.508 sum 2.795 -2.171 7.555 8.342 Atomic orbital electron populations 1.23162 0.77258 1.02971 1.02360 1.86510 1.22878 1.34306 1.84851 1.24579 0.92661 0.81319 0.72359 1.90628 1.66564 1.36223 1.43905 1.21427 0.87206 0.88230 1.05234 1.43376 1.57143 1.08344 1.06851 1.19138 1.39526 0.99723 0.90379 0.87093 1.25287 0.95924 0.97879 0.94643 1.69729 1.36970 1.39512 0.99037 0.87327 0.81321 0.83385 0.80363 1.19098 1.20437 1.17904 1.20810 0.80130 0.89665 0.83525 1.90585 1.55349 1.69323 1.31235 1.20423 0.91800 0.92374 0.86203 0.84659 1.86630 1.68300 1.62633 1.16420 1.20110 0.96334 1.00084 0.93232 1.21314 0.92537 0.94412 0.99872 1.20975 0.96640 1.01603 0.95381 1.20971 0.99456 0.95300 0.92296 1.21043 0.96083 1.13128 0.83005 1.43565 1.00445 0.97923 1.03039 1.94463 1.04336 1.56655 1.84464 1.94618 1.42727 1.52771 1.45467 1.21116 0.94654 0.89512 0.96343 0.88614 0.92239 0.92085 0.87205 0.87069 0.90708 0.77517 0.84565 0.83988 0.83558 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.53 10.56 -39.25 -0.41 -6.94 16 3 C 0.45 9.39 7.99 36.00 0.29 9.68 16 4 O -0.49 -11.40 16.08 -18.76 -0.30 -11.70 16 5 C 0.10 2.16 4.62 -5.19 -0.02 2.13 16 6 N -0.44 -9.57 1.71 -116.09 -0.20 -9.77 16 7 C -0.36 -8.34 7.01 -14.93 -0.10 -8.44 16 8 H 0.11 2.64 5.31 -52.49 -0.28 2.36 16 9 C 0.07 1.77 5.30 -17.47 -0.09 1.68 16 10 N -0.82 -20.74 13.96 55.50 0.77 -19.96 16 11 Si 0.85 18.23 25.03 -169.99 -4.26 13.97 16 12 H -0.26 -5.37 6.60 56.52 0.37 -4.99 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.47 9.85 6.81 -10.99 -0.07 9.77 16 16 O -0.58 -12.96 15.93 -14.08 -0.22 -13.18 16 17 C 0.15 2.75 2.94 -29.04 -0.09 2.66 16 18 H 0.14 2.46 7.03 -51.93 -0.37 2.09 16 19 O -0.53 -8.76 12.92 -54.86 -0.71 -9.46 16 20 C -0.10 -1.56 4.57 -104.63 -0.48 -2.04 16 21 C -0.06 -0.84 9.30 -39.58 -0.37 -1.21 16 22 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 23 C -0.06 -0.85 9.56 -39.58 -0.38 -1.23 16 24 C -0.05 -0.85 6.85 -79.95 -0.55 -1.40 16 25 N 0.03 0.61 4.45 33.96 0.15 0.76 16 26 O -0.19 -3.61 18.45 -29.46 -0.54 -4.16 16 27 O -0.13 -2.80 18.45 -29.46 -0.54 -3.34 16 28 C 0.00 0.05 7.54 -39.58 -0.30 -0.25 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.11 2.27 3.38 -51.93 -0.18 2.10 16 33 H 0.11 2.13 7.50 -51.93 -0.39 1.75 16 34 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.38 5.00 7.22 45.56 0.33 5.33 16 36 H 0.14 1.49 6.85 -52.48 -0.36 1.13 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.15 1.76 7.61 -52.48 -0.40 1.36 16 39 H 0.17 3.19 5.82 -52.49 -0.31 2.89 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -30.43 342.97 -5.39 -35.82 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.80 Total: 11.80 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -1.50 Total: 11.00 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.73 Total: -28.97 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.74 Total: -48.79 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.26 Total: 13.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.43 -5.39 -35.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826101783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.851 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds