Wall clock time and date at job start Tue Mar 31 2020 20:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 117.00148 * 2 1 4 4 O 1.20833 * 119.99740 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00216 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.47291 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99872 * 265.27833 * 6 5 3 8 8 H 1.07997 * 119.99805 * 142.28368 * 7 6 5 9 9 C 1.38950 * 119.99630 * 322.27930 * 7 6 5 10 10 N 1.31411 * 119.99445 * 159.01618 * 9 7 6 11 11 Si 1.86799 * 120.00268 * 339.00697 * 9 7 6 12 12 H 1.48495 * 109.47121 * 93.47246 * 11 9 7 13 13 H 1.48498 * 109.46934 * 213.47178 * 11 9 7 14 14 H 1.48499 * 109.47042 * 333.47006 * 11 9 7 15 15 C 1.34771 * 119.99990 * 85.27443 * 6 5 3 16 16 O 1.21292 * 120.00156 * 4.64936 * 15 6 5 17 17 C 1.50698 * 120.00008 * 184.65108 * 15 6 5 18 18 H 1.09004 * 109.47208 * 48.18271 * 17 15 6 19 19 O 1.42909 * 109.47050 * 168.17665 * 17 15 6 20 20 C 1.50693 * 109.47329 * 288.17897 * 17 15 6 21 21 C 1.38254 * 120.00095 * 281.55518 * 20 17 15 22 22 C 1.38215 * 120.00301 * 179.97438 * 21 20 17 23 23 C 1.38258 * 119.99683 * 359.95630 * 22 21 20 24 24 C 1.38215 * 120.00292 * 0.02562 * 23 22 21 25 25 N 1.48019 * 120.00325 * 180.02562 * 24 23 22 26 26 O 1.21798 * 119.99431 * 359.97438 * 25 24 23 27 27 O 1.21792 * 120.00199 * 179.97438 * 25 24 23 28 28 C 1.38211 * 119.99960 * 101.27899 * 20 17 15 29 29 H 1.09006 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47818 * 300.00455 * 1 2 3 31 31 H 1.09005 * 109.46627 * 60.00685 * 1 2 3 32 32 H 1.09005 * 109.46845 * 60.00516 * 5 3 2 33 33 H 1.09000 * 109.47232 * 300.00001 * 5 3 2 34 34 H 0.97002 * 119.99526 * 179.97438 * 10 9 7 35 35 H 0.96703 * 113.99722 * 60.00332 * 19 17 15 36 36 H 1.08003 * 119.99843 * 359.97438 * 21 20 17 37 37 H 1.07995 * 120.00194 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00044 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.99946 * 0.02562 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2702 3.3097 -1.1820 8 1 3.9894 4.3425 -1.3263 9 6 4.9241 2.6193 -2.1952 10 7 4.8433 3.0425 -3.4366 11 14 5.9179 1.0897 -1.7926 12 1 5.0650 -0.1138 -1.9630 13 1 7.0849 1.0029 -2.7068 14 1 6.3939 1.1643 -0.3879 15 6 4.0801 3.3530 1.1645 16 8 3.9072 2.7745 2.2164 17 6 4.4051 4.8245 1.1584 18 1 3.7637 5.3353 0.4401 19 8 4.1855 5.3662 2.4624 20 6 5.8482 5.0187 0.7702 21 6 6.8488 4.8060 1.7002 22 6 8.1724 4.9836 1.3441 23 6 8.4958 5.3731 0.0575 24 6 7.4955 5.5853 -0.8724 25 7 7.8417 6.0017 -2.2499 26 8 9.0082 6.1578 -2.5639 27 8 6.9603 6.1883 -3.0694 28 6 6.1717 5.4039 -0.5171 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 5.3000 2.5608 -4.1439 35 1 4.7244 4.9578 3.1538 36 1 6.5962 4.5011 2.7050 37 1 8.9540 4.8179 2.0706 38 1 9.5301 5.5114 -0.2210 39 1 5.3902 5.5661 -1.2447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826101783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:24 Heat of formation + Delta-G solvation = -138.248747 kcal Electronic energy + Delta-G solvation = -30726.527693 eV Core-core repulsion = 26217.382713 eV Total energy + Delta-G solvation = -4509.144979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17880 -41.98373 -41.21289 -39.94325 -38.01342 -37.58662 -37.33278 -36.74178 -34.13122 -33.20546 -32.81700 -30.80525 -28.59795 -27.75865 -27.52747 -26.50135 -23.81518 -23.18824 -22.52479 -21.32366 -20.15850 -19.76575 -19.67190 -19.12273 -18.60008 -18.52028 -17.84229 -17.51550 -17.43010 -17.25949 -16.91593 -16.62919 -16.12973 -15.56939 -15.17981 -14.92542 -14.80209 -14.63624 -14.46205 -14.25315 -13.97443 -13.58629 -13.39067 -13.21775 -13.03099 -13.01074 -12.76402 -12.58988 -12.45443 -12.21472 -12.17855 -12.10302 -11.94302 -11.86352 -11.75100 -11.22168 -10.82258 -10.47970 -10.17171 -9.87892 -8.59663 -6.26663 -1.14412 -0.01686 0.36959 0.49726 1.04251 1.08196 1.19336 1.27701 1.35847 1.78699 2.03943 2.26017 2.37812 2.84411 3.24133 3.39495 3.55070 3.73322 3.77648 3.84075 3.90812 3.92516 4.04987 4.13196 4.13683 4.27003 4.27364 4.43740 4.61648 4.68199 4.84159 4.98459 5.09163 5.12499 5.24035 5.26925 5.55407 5.88989 5.99816 6.50483 6.57708 6.64996 6.76410 7.12241 7.44001 8.50649 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.005169 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.071482 B = 5415.244977 C = 6523.490328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.096 3.904 6 N -0.447 5.447 7 C -0.349 4.349 8 H 0.089 0.911 9 C 0.042 3.958 10 N -0.865 5.865 11 Si 0.889 3.111 12 H -0.245 1.245 13 H -0.288 1.288 14 H -0.244 1.244 15 C 0.468 3.532 16 O -0.593 6.593 17 C 0.163 3.837 18 H 0.119 0.881 19 O -0.536 6.536 20 C -0.109 4.109 21 C -0.052 4.052 22 C -0.104 4.104 23 C -0.054 4.054 24 C -0.070 4.070 25 N 0.033 4.967 26 O -0.159 6.159 27 O -0.208 6.208 28 C -0.012 4.012 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.280 0.720 35 H 0.392 0.608 36 H 0.170 0.830 37 H 0.196 0.804 38 H 0.173 0.827 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -2.743 10.454 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.029 4.029 6 N -0.168 5.168 7 C -0.476 4.476 8 H 0.107 0.893 9 C -0.166 4.166 10 N -0.499 5.499 11 Si 0.713 3.287 12 H -0.170 1.170 13 H -0.215 1.215 14 H -0.167 1.167 15 C 0.258 3.742 16 O -0.478 6.478 17 C 0.101 3.899 18 H 0.136 0.864 19 O -0.343 6.343 20 C -0.110 4.110 21 C -0.070 4.070 22 C -0.122 4.122 23 C -0.073 4.073 24 C -0.154 4.154 25 N 0.547 4.453 26 O -0.379 6.379 27 O -0.413 6.413 28 C -0.032 4.032 29 H 0.159 0.841 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.243 0.757 36 H 0.187 0.813 37 H 0.213 0.787 38 H 0.190 0.810 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.874 -2.565 11.055 11.992 hybrid contribution 0.176 -0.733 -1.186 1.405 sum 4.050 -3.299 9.870 11.167 Atomic orbital electron populations 1.23570 0.74741 1.05922 1.02262 1.86484 1.25240 1.32347 1.84037 1.24577 0.92826 0.81679 0.71574 1.90614 1.67292 1.37493 1.45722 1.21550 0.87550 0.87702 1.06060 1.43442 1.57751 1.08963 1.06661 1.18907 1.39014 0.98960 0.90687 0.89335 1.25747 0.96529 1.00109 0.94239 1.69822 1.38753 1.41324 0.99983 0.86691 0.80106 0.81562 0.80326 1.17038 1.21506 1.16702 1.21330 0.79123 0.90730 0.82981 1.90560 1.55767 1.70076 1.31376 1.20152 0.92934 0.90166 0.86693 0.86364 1.86619 1.68929 1.62525 1.16220 1.19975 0.96060 1.01689 0.93306 1.21792 0.92493 0.92277 1.00469 1.21566 0.97119 0.98457 0.95050 1.21461 0.99760 0.93761 0.92278 1.21272 0.96896 1.15069 0.82114 1.43927 1.00120 0.97310 1.03924 1.94394 1.04302 1.54435 1.84788 1.94642 1.43067 1.56666 1.46962 1.20880 0.94458 0.91202 0.96650 0.84123 0.92141 0.92492 0.87156 0.85230 0.90957 0.75735 0.81283 0.78680 0.80968 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.36 10.56 -51.40 -0.54 -12.90 16 3 C 0.45 18.61 7.99 71.23 0.57 19.18 16 4 O -0.52 -24.73 16.08 21.94 0.35 -24.38 16 5 C 0.10 3.89 4.62 85.63 0.40 4.29 16 6 N -0.45 -19.64 1.71 -639.59 -1.10 -20.74 16 7 C -0.35 -16.70 7.01 84.04 0.59 -16.11 16 8 H 0.09 4.58 5.31 -2.91 -0.02 4.56 16 9 C 0.04 2.05 5.30 84.93 0.45 2.50 16 10 N -0.87 -46.07 13.96 21.66 0.30 -45.77 16 11 Si 0.89 36.99 25.03 68.60 1.72 38.71 16 12 H -0.24 -9.34 6.60 99.48 0.66 -8.69 16 13 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.24 -9.60 7.11 99.48 0.71 -8.90 16 15 C 0.47 19.37 6.81 87.66 0.60 19.97 16 16 O -0.59 -25.47 15.93 15.70 0.25 -25.22 16 17 C 0.16 5.81 2.94 29.10 0.09 5.90 16 18 H 0.12 4.59 7.03 -2.38 -0.02 4.57 16 19 O -0.54 -16.76 12.92 -130.21 -1.68 -18.44 16 20 C -0.11 -3.43 4.57 -19.87 -0.09 -3.52 16 21 C -0.05 -1.19 9.30 22.27 0.21 -0.98 16 22 C -0.10 -1.91 10.05 22.27 0.22 -1.68 16 23 C -0.05 -1.30 9.56 22.27 0.21 -1.09 16 24 C -0.07 -2.40 6.85 36.38 0.25 -2.15 16 25 N 0.03 1.32 4.45 -46.46 -0.21 1.11 16 26 O -0.16 -5.90 18.45 18.89 0.35 -5.55 16 27 O -0.21 -9.51 18.45 18.90 0.35 -9.17 16 28 C -0.01 -0.45 7.54 22.27 0.17 -0.29 16 29 H 0.14 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 32 H 0.11 4.44 3.38 -2.38 -0.01 4.43 16 33 H 0.13 4.72 7.50 -2.39 -0.02 4.70 16 34 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.39 9.25 7.22 -74.06 -0.53 8.72 16 36 H 0.17 2.74 6.85 -2.91 -0.02 2.72 16 37 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.17 3.31 7.61 -2.91 -0.02 3.29 16 39 H 0.14 5.75 5.82 -2.91 -0.02 5.73 16 Total: -1.00 -69.84 342.97 5.21 -64.63 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.57 Total: 29.80 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 4.85 Total: 27.93 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.00 Total: -65.39 kcal Atomic # 8 Polarization: -94.74 SS G_CDS: -0.92 Total: -95.66 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.72 Total: 38.71 kcal Total: -69.84 5.21 -64.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826101783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.621 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds