Wall clock time and date at job start Tue Mar 31 2020 20:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00451 * 2 1 4 4 H 1.48500 * 109.47246 * 270.00211 * 3 2 1 5 5 H 1.48504 * 109.47012 * 30.00627 * 3 2 1 6 6 H 1.48502 * 109.47051 * 150.00399 * 3 2 1 7 7 C 1.37885 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 171.97025 * 7 2 1 9 9 C 1.50705 * 119.99694 * 351.97063 * 7 2 1 10 10 C 1.52998 * 115.55061 * 84.76415 * 9 7 2 11 11 S 1.81403 * 109.47231 * 65.27807 * 10 9 7 12 12 O 1.42101 * 110.54019 * 63.01598 * 11 10 9 13 13 O 1.42100 * 110.54218 * 286.26822 * 11 10 9 14 14 O 1.52196 * 104.45061 * 174.64233 * 11 10 9 15 15 C 1.35993 * 113.99880 * 74.99953 * 14 11 10 16 16 C 1.38404 * 119.94045 * 269.97828 * 15 14 11 17 17 C 1.38248 * 119.89922 * 180.02562 * 16 15 14 18 18 C 1.38106 * 120.01697 * 0.09673 * 17 16 15 19 19 C 1.38589 * 120.41634 * 359.97438 * 18 17 16 20 20 C 1.38227 * 119.87128 * 359.82357 * 19 18 17 21 21 O 1.35932 * 121.82664 * 180.32420 * 20 19 18 22 22 C 1.42828 * 117.87579 * 342.84345 * 21 20 19 23 23 C 1.53415 * 108.37386 * 49.06912 * 22 21 20 24 24 C 1.50877 * 118.71050 * 179.61448 * 19 18 17 25 25 C 1.53000 * 117.49790 * 230.43421 * 9 7 2 26 26 C 1.53002 * 117.49767 * 299.09237 * 9 7 2 27 27 H 0.97001 * 119.99068 * 5.02217 * 1 2 3 28 28 H 1.09002 * 109.46842 * 305.27781 * 10 9 7 29 29 H 1.08992 * 109.47205 * 185.28243 * 10 9 7 30 30 H 1.08003 * 120.05059 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.98917 * 180.11634 * 17 16 15 32 32 H 1.08005 * 119.78878 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.68284 * 289.35499 * 22 21 20 34 34 H 1.08992 * 109.71787 * 168.80599 * 22 21 20 35 35 H 1.08994 * 109.70151 * 55.02919 * 23 22 21 36 36 H 1.09004 * 109.69707 * 175.58923 * 23 22 21 37 37 H 1.08992 * 109.48704 * 42.21485 * 24 19 18 38 38 H 1.09000 * 109.43318 * 282.31458 * 24 19 18 39 39 H 1.08990 * 117.49721 * 215.00527 * 25 9 7 40 40 H 1.09000 * 117.49675 * 0.02562 * 25 9 7 41 41 H 1.09001 * 117.49951 * 359.97438 * 26 9 7 42 42 H 1.08997 * 117.49305 * 144.97504 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4399 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0766 -1.1987 -0.1312 9 6 1.2620 -2.4929 0.1812 10 6 0.6620 -3.0937 -1.0916 11 16 1.9974 -3.5694 -2.2234 12 8 2.8065 -4.5826 -1.6421 13 8 2.5802 -2.4183 -2.8189 14 8 1.2887 -4.2692 -3.3742 15 6 0.6383 -3.4247 -4.2187 16 6 -0.6835 -3.0912 -3.9795 17 6 -1.3441 -2.2330 -4.8389 18 6 -0.6859 -1.7112 -5.9352 19 6 0.6372 -2.0417 -6.1821 20 6 1.3049 -2.8959 -5.3247 21 8 2.6042 -3.2414 -5.5251 22 6 3.1632 -3.0152 -6.8199 23 6 2.8344 -1.5781 -7.2443 24 6 1.3160 -1.4565 -7.3958 25 6 1.7854 -3.4635 1.2418 26 6 0.4888 -2.6878 1.4870 27 1 -0.4849 0.8369 -0.0735 28 1 0.0217 -2.3557 -1.5748 29 1 0.0724 -3.9737 -0.8350 30 1 -1.1982 -3.5007 -3.1229 31 1 -2.3749 -1.9703 -4.6526 32 1 -1.2054 -1.0408 -6.6039 33 1 2.7316 -3.7166 -7.5338 34 1 4.2443 -3.1485 -6.7820 35 1 3.1847 -0.8809 -6.4832 36 1 3.3174 -1.3564 -8.1959 37 1 1.0442 -0.4055 -7.4931 38 1 0.9959 -1.9973 -8.2864 39 1 1.7024 -4.5299 1.0328 40 1 2.6666 -3.1624 1.8084 41 1 0.5175 -1.8769 2.2147 42 1 -0.4476 -3.2437 1.4391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828037708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:26 Heat of formation + Delta-G solvation = -93.821353 kcal Electronic energy + Delta-G solvation = -28810.614200 eV Core-core repulsion = 24849.688952 eV Total energy + Delta-G solvation = -3960.925248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.21560 -39.27391 -37.25052 -36.71807 -36.24654 -35.10120 -34.04625 -32.02197 -30.80291 -29.69455 -28.22811 -25.84955 -25.45236 -23.87549 -23.21935 -21.19627 -20.59173 -19.90994 -19.33689 -17.87420 -17.63492 -16.98164 -16.96985 -16.28040 -15.52028 -15.47961 -14.86104 -14.68317 -14.39711 -14.30068 -14.13510 -13.83483 -13.80365 -13.28697 -13.07168 -12.77679 -12.31990 -12.05596 -11.97164 -11.88363 -11.81071 -11.33622 -11.25315 -11.13415 -11.02593 -10.98691 -10.92923 -10.84027 -10.59697 -10.55585 -10.42941 -10.07617 -9.67082 -8.93692 -8.76982 -8.54209 -8.18098 -8.04551 -6.12227 -4.21760 0.69861 1.28759 1.48603 2.92014 3.22788 3.31190 3.36446 3.42114 3.57655 4.38617 4.45386 4.50217 4.52072 4.64248 4.76272 4.92649 5.02262 5.05212 5.15266 5.16459 5.21132 5.24261 5.32702 5.45818 5.47681 5.62887 5.67036 5.79586 5.94366 5.97955 6.07046 6.17976 6.26144 6.37411 6.38398 6.39078 6.61682 6.71655 6.75028 7.00023 7.25298 7.40807 7.40961 7.82730 8.22568 8.83377 9.48758 10.95627 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.005272 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.540953 B = 5309.631807 C = 5941.665469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.045 3.955 10 C -0.580 4.580 11 S 2.587 3.413 12 O -0.948 6.948 13 O -0.934 6.934 14 O -0.673 6.673 15 C 0.051 3.949 16 C -0.093 4.093 17 C -0.133 4.133 18 C -0.073 4.073 19 C -0.155 4.155 20 C 0.162 3.838 21 O -0.297 6.297 22 C 0.058 3.942 23 C -0.164 4.164 24 C -0.074 4.074 25 C -0.210 4.210 26 C -0.140 4.140 27 H 0.262 0.738 28 H 0.137 0.863 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -3.733 -15.293 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.043 3.957 10 C -0.711 4.711 11 S 2.686 3.314 12 O -0.946 6.946 13 O -0.933 6.933 14 O -0.631 6.631 15 C 0.008 3.992 16 C -0.113 4.113 17 C -0.151 4.151 18 C -0.091 4.091 19 C -0.156 4.156 20 C 0.114 3.886 21 O -0.209 6.209 22 C -0.017 4.017 23 C -0.202 4.202 24 C -0.110 4.110 25 C -0.247 4.247 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.120 0.880 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.405 -4.026 -15.418 16.115 hybrid contribution -0.251 1.079 0.370 1.168 sum -2.655 -2.947 -15.048 15.562 Atomic orbital electron populations 1.69980 1.06003 1.27075 1.47884 1.24932 0.94792 0.99127 0.93325 0.86596 0.80182 0.82893 0.78611 1.20095 1.21095 1.19430 1.20516 0.93770 0.88521 1.52282 0.91303 1.18227 0.98988 0.94377 0.84084 1.30287 1.17145 1.08854 1.14781 1.05730 0.76994 0.73892 0.74816 1.93519 1.65132 1.58485 1.77496 1.93584 1.75342 1.52083 1.72248 1.85770 1.73442 1.53373 1.50499 1.17413 0.91466 0.96949 0.93350 1.21227 0.91641 0.97646 1.00788 1.20855 1.00883 0.98378 0.94986 1.21030 0.92956 0.98138 0.97023 1.19708 0.95686 1.00791 0.99454 1.18618 0.83809 0.92699 0.93487 1.86142 1.22100 1.79342 1.33346 1.23053 0.99630 0.96215 0.82765 1.22290 0.96449 0.97937 1.03520 1.20475 0.94327 1.01617 0.94624 1.23222 0.98710 0.96135 1.06631 1.22555 0.92607 1.01001 1.01770 0.92798 0.84459 0.88029 0.83591 0.84332 0.84938 0.91691 0.87166 0.89554 0.89596 0.89530 0.90282 0.90609 0.89402 0.89523 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 12.99 55.43 0.72 -23.26 16 2 C 0.08 2.28 5.38 -17.82 -0.10 2.19 16 3 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.28 8.15 -34.44 -0.28 -14.56 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C 0.05 1.14 1.32 -155.66 -0.21 0.93 16 10 C -0.58 -12.93 5.14 37.16 0.19 -12.74 16 11 S 2.59 59.69 4.91 -107.50 -0.53 59.17 16 12 O -0.95 -23.64 18.09 -67.04 -1.21 -24.85 16 13 O -0.93 -23.73 15.36 -68.81 -1.06 -24.78 16 14 O -0.67 -13.76 9.76 -54.39 -0.53 -14.29 16 15 C 0.05 0.95 4.81 -39.03 -0.19 0.76 16 16 C -0.09 -1.45 8.52 -39.52 -0.34 -1.79 16 17 C -0.13 -1.71 10.04 -39.63 -0.40 -2.11 16 18 C -0.07 -0.88 9.66 -39.50 -0.38 -1.27 16 19 C -0.16 -2.17 5.75 -104.41 -0.60 -2.77 16 20 C 0.16 2.86 5.75 -39.10 -0.22 2.63 16 21 O -0.30 -5.28 9.34 -43.33 -0.40 -5.69 16 22 C 0.06 0.69 7.03 37.37 0.26 0.95 16 23 C -0.16 -1.70 6.19 -26.48 -0.16 -1.86 16 24 C -0.07 -0.74 5.87 -27.76 -0.16 -0.90 16 25 C -0.21 -4.76 9.96 -26.69 -0.27 -5.03 16 26 C -0.14 -3.25 9.50 -26.69 -0.25 -3.50 16 27 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.14 3.09 6.99 -51.92 -0.36 2.72 16 29 H 0.10 1.91 8.09 -51.93 -0.42 1.49 16 30 H 0.15 1.98 7.59 -52.48 -0.40 1.58 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -34.88 360.74 -11.50 -46.38 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.80 Total: 4.44 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: -3.10 Total: -39.06 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.72 Total: -23.26 kcal Atomic # 8 Polarization: -66.40 SS G_CDS: -3.21 Total: -69.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 59.69 SS G_CDS: -0.53 Total: 59.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.88 -11.50 -46.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828037708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.440 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds