Wall clock time and date at job start Tue Mar 31 2020 20:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00451 * 2 1 4 4 H 1.48500 * 109.47246 * 270.00211 * 3 2 1 5 5 H 1.48504 * 109.47012 * 30.00627 * 3 2 1 6 6 H 1.48502 * 109.47051 * 150.00399 * 3 2 1 7 7 C 1.37885 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 171.97025 * 7 2 1 9 9 C 1.50705 * 119.99694 * 351.97063 * 7 2 1 10 10 C 1.52998 * 115.55061 * 84.76415 * 9 7 2 11 11 S 1.81403 * 109.47231 * 65.27807 * 10 9 7 12 12 O 1.42101 * 110.54019 * 63.01598 * 11 10 9 13 13 O 1.42100 * 110.54218 * 286.26822 * 11 10 9 14 14 O 1.52196 * 104.45061 * 174.64233 * 11 10 9 15 15 C 1.35993 * 113.99880 * 74.99953 * 14 11 10 16 16 C 1.38404 * 119.94045 * 269.97828 * 15 14 11 17 17 C 1.38248 * 119.89922 * 180.02562 * 16 15 14 18 18 C 1.38106 * 120.01697 * 0.09673 * 17 16 15 19 19 C 1.38589 * 120.41634 * 359.97438 * 18 17 16 20 20 C 1.38227 * 119.87128 * 359.82357 * 19 18 17 21 21 O 1.35932 * 121.82664 * 180.32420 * 20 19 18 22 22 C 1.42828 * 117.87579 * 342.84345 * 21 20 19 23 23 C 1.53415 * 108.37386 * 49.06912 * 22 21 20 24 24 C 1.50877 * 118.71050 * 179.61448 * 19 18 17 25 25 C 1.53000 * 117.49790 * 230.43421 * 9 7 2 26 26 C 1.53002 * 117.49767 * 299.09237 * 9 7 2 27 27 H 0.97001 * 119.99068 * 5.02217 * 1 2 3 28 28 H 1.09002 * 109.46842 * 305.27781 * 10 9 7 29 29 H 1.08992 * 109.47205 * 185.28243 * 10 9 7 30 30 H 1.08003 * 120.05059 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.98917 * 180.11634 * 17 16 15 32 32 H 1.08005 * 119.78878 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.68284 * 289.35499 * 22 21 20 34 34 H 1.08992 * 109.71787 * 168.80599 * 22 21 20 35 35 H 1.08994 * 109.70151 * 55.02919 * 23 22 21 36 36 H 1.09004 * 109.69707 * 175.58923 * 23 22 21 37 37 H 1.08992 * 109.48704 * 42.21485 * 24 19 18 38 38 H 1.09000 * 109.43318 * 282.31458 * 24 19 18 39 39 H 1.08990 * 117.49721 * 215.00527 * 25 9 7 40 40 H 1.09000 * 117.49675 * 0.02562 * 25 9 7 41 41 H 1.09001 * 117.49951 * 359.97438 * 26 9 7 42 42 H 1.08997 * 117.49305 * 144.97504 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4399 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0766 -1.1987 -0.1312 9 6 1.2620 -2.4929 0.1812 10 6 0.6620 -3.0937 -1.0916 11 16 1.9974 -3.5694 -2.2234 12 8 2.8065 -4.5826 -1.6421 13 8 2.5802 -2.4183 -2.8189 14 8 1.2887 -4.2692 -3.3742 15 6 0.6383 -3.4247 -4.2187 16 6 -0.6835 -3.0912 -3.9795 17 6 -1.3441 -2.2330 -4.8389 18 6 -0.6859 -1.7112 -5.9352 19 6 0.6372 -2.0417 -6.1821 20 6 1.3049 -2.8959 -5.3247 21 8 2.6042 -3.2414 -5.5251 22 6 3.1632 -3.0152 -6.8199 23 6 2.8344 -1.5781 -7.2443 24 6 1.3160 -1.4565 -7.3958 25 6 1.7854 -3.4635 1.2418 26 6 0.4888 -2.6878 1.4870 27 1 -0.4849 0.8369 -0.0735 28 1 0.0217 -2.3557 -1.5748 29 1 0.0724 -3.9737 -0.8350 30 1 -1.1982 -3.5007 -3.1229 31 1 -2.3749 -1.9703 -4.6526 32 1 -1.2054 -1.0408 -6.6039 33 1 2.7316 -3.7166 -7.5338 34 1 4.2443 -3.1485 -6.7820 35 1 3.1847 -0.8809 -6.4832 36 1 3.3174 -1.3564 -8.1959 37 1 1.0442 -0.4055 -7.4931 38 1 0.9959 -1.9973 -8.2864 39 1 1.7024 -4.5299 1.0328 40 1 2.6666 -3.1624 1.8084 41 1 0.5175 -1.8769 2.2147 42 1 -0.4476 -3.2437 1.4391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828037708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:25 Heat of formation + Delta-G solvation = -115.850842 kcal Electronic energy + Delta-G solvation = -28811.569471 eV Core-core repulsion = 24849.688952 eV Total energy + Delta-G solvation = -3961.880519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42771 -40.55911 -38.63963 -38.32163 -38.08630 -36.95490 -34.98777 -34.08901 -31.81762 -30.81962 -29.98700 -27.53380 -26.74870 -24.90732 -24.47507 -23.02553 -21.96183 -21.13591 -21.00840 -19.35507 -18.87046 -18.61720 -18.45859 -17.91642 -17.04091 -16.75047 -16.58239 -16.04708 -15.94210 -15.63466 -15.45893 -15.00589 -14.95982 -14.88447 -14.26521 -13.95050 -13.80477 -13.79072 -13.61209 -13.24040 -13.20603 -13.02989 -13.01233 -12.91521 -12.87069 -12.45795 -12.38415 -12.26133 -11.94218 -11.89733 -11.73590 -11.60465 -11.51588 -10.89453 -10.56150 -10.05442 -9.78147 -9.26236 -8.19287 -6.33414 -0.85158 0.10910 0.28236 1.36502 1.37421 1.39488 1.48487 2.19550 2.39411 2.50363 2.76524 3.04804 3.16720 3.35293 3.50936 3.66129 3.74442 3.81697 3.94742 4.00172 4.12152 4.17244 4.26135 4.28636 4.43541 4.46527 4.55764 4.58581 4.65142 4.76736 4.88169 4.93529 4.95007 5.04313 5.07051 5.16898 5.19051 5.27982 5.35753 5.40711 5.56371 5.68853 5.71262 6.20853 6.33491 6.71070 7.38011 8.88132 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.005272 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.540953 B = 5309.631807 C = 5941.665469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.012 3.988 10 C -0.570 4.570 11 S 2.595 3.405 12 O -0.980 6.980 13 O -0.969 6.969 14 O -0.668 6.668 15 C -0.004 4.004 16 C -0.107 4.107 17 C -0.132 4.132 18 C -0.061 4.061 19 C -0.164 4.164 20 C 0.135 3.865 21 O -0.338 6.338 22 C 0.042 3.958 23 C -0.162 4.162 24 C -0.073 4.073 25 C -0.203 4.203 26 C -0.130 4.130 27 H 0.267 0.733 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -2.740 -17.275 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.156 4.156 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.010 3.990 10 C -0.701 4.701 11 S 2.696 3.304 12 O -0.979 6.979 13 O -0.968 6.968 14 O -0.627 6.627 15 C -0.046 4.046 16 C -0.127 4.127 17 C -0.150 4.150 18 C -0.080 4.080 19 C -0.165 4.165 20 C 0.086 3.914 21 O -0.252 6.252 22 C -0.032 4.032 23 C -0.199 4.199 24 C -0.110 4.110 25 C -0.240 4.240 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.192 0.808 32 H 0.196 0.804 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.386 -3.038 -17.390 18.190 hybrid contribution 0.328 0.777 0.856 1.202 sum -4.058 -2.261 -16.534 17.174 Atomic orbital electron populations 1.70008 1.06435 1.27839 1.47954 1.25467 0.95664 1.01311 0.93173 0.85921 0.79361 0.80339 0.78445 1.20315 1.19434 1.19679 1.20630 0.93079 0.90521 1.53033 0.93593 1.18364 1.00532 0.94421 0.85718 1.30105 1.16762 1.09945 1.13269 1.05383 0.77152 0.72947 0.74911 1.93456 1.66823 1.59085 1.78507 1.93519 1.76630 1.53473 1.73133 1.85715 1.73635 1.53119 1.50221 1.18109 0.92937 0.99294 0.94293 1.21573 0.90778 0.98321 1.01999 1.21384 1.02370 0.96896 0.94373 1.21633 0.92248 0.97217 0.96862 1.20303 0.96574 0.99587 0.99998 1.19057 0.84101 0.93891 0.94326 1.86069 1.22746 1.79966 1.36387 1.23472 1.00244 0.98089 0.81365 1.22298 0.97375 0.95893 1.04317 1.20658 0.93464 1.02919 0.93916 1.23281 0.98590 0.96864 1.05285 1.22528 0.93704 1.00678 1.00009 0.92383 0.84754 0.84700 0.82489 0.80817 0.80446 0.89426 0.86261 0.92557 0.85777 0.87529 0.87109 0.88687 0.89670 0.91020 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.27 12.99 21.45 0.28 -48.00 16 2 C 0.05 2.61 5.38 84.66 0.46 3.06 16 3 Si 0.93 44.23 29.55 68.60 2.03 46.26 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.54 -30.41 8.15 25.60 0.21 -30.20 16 8 H 0.05 2.74 7.83 -2.91 -0.02 2.71 16 9 C 0.01 0.59 1.32 -52.93 -0.07 0.52 16 10 C -0.57 -25.43 5.14 71.98 0.37 -25.06 16 11 S 2.59 123.99 4.91 -56.49 -0.28 123.71 16 12 O -0.98 -50.73 18.09 -118.57 -2.15 -52.87 16 13 O -0.97 -51.77 15.36 -116.88 -1.79 -53.57 16 14 O -0.67 -28.38 9.76 -60.32 -0.59 -28.97 16 15 C 0.00 -0.15 4.81 22.62 0.11 -0.04 16 16 C -0.11 -3.25 8.52 22.31 0.19 -3.06 16 17 C -0.13 -3.05 10.04 22.24 0.22 -2.82 16 18 C -0.06 -1.28 9.66 22.32 0.22 -1.06 16 19 C -0.16 -4.24 5.75 -19.73 -0.11 -4.36 16 20 C 0.13 4.79 5.75 22.58 0.13 4.92 16 21 O -0.34 -12.49 9.34 -70.02 -0.65 -13.14 16 22 C 0.04 0.98 7.03 72.12 0.51 1.49 16 23 C -0.16 -3.06 6.19 30.76 0.19 -2.87 16 24 C -0.07 -1.23 5.87 29.93 0.18 -1.06 16 25 C -0.20 -9.17 9.96 30.62 0.30 -8.87 16 26 C -0.13 -5.93 9.50 30.62 0.29 -5.64 16 27 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 28 H 0.13 6.07 6.99 -2.39 -0.02 6.05 16 29 H 0.13 4.94 8.09 -2.39 -0.02 4.92 16 30 H 0.16 4.15 7.59 -2.91 -0.02 4.13 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 41 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -79.19 360.74 1.06 -78.13 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.03 Total: 23.50 kcal Atomic # 6 Polarization: -78.24 SS G_CDS: 3.19 Total: -75.05 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.28 Total: -48.00 kcal Atomic # 8 Polarization: -143.37 SS G_CDS: -5.18 Total: -148.55 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 123.99 SS G_CDS: -0.28 Total: 123.71 kcal Total: -79.19 1.06 -78.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828037708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.725 kcal (2) G-P(sol) polarization free energy of solvation -79.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds