Wall clock time and date at job start Tue Mar 31 2020 20:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99768 * 2 1 4 4 H 1.48493 * 109.47116 * 264.41797 * 3 2 1 5 5 H 1.48500 * 109.47051 * 24.42217 * 3 2 1 6 6 H 1.48501 * 109.46952 * 144.41970 * 3 2 1 7 7 C 1.37872 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00384 * 358.58639 * 7 2 1 9 9 C 1.50698 * 120.00059 * 178.58161 * 7 2 1 10 10 C 1.52999 * 115.54879 * 83.94699 * 9 7 2 11 11 S 1.81400 * 109.46955 * 58.92211 * 10 9 7 12 12 O 1.42101 * 110.54599 * 63.03773 * 11 10 9 13 13 O 1.42095 * 110.54222 * 286.28655 * 11 10 9 14 14 O 1.52206 * 104.45096 * 174.66492 * 11 10 9 15 15 C 1.35979 * 114.00051 * 82.77435 * 14 11 10 16 16 C 1.38719 * 120.07109 * 269.98440 * 15 14 11 17 17 C 1.37955 * 119.90169 * 180.10828 * 16 15 14 18 18 C 1.39128 * 120.29314 * 359.97438 * 17 16 15 19 19 C 1.38348 * 119.78072 * 359.86372 * 18 17 16 20 20 C 1.38502 * 119.88646 * 0.21577 * 19 18 17 21 21 C 1.50778 * 121.41307 * 180.29606 * 19 18 17 22 22 C 1.53058 * 109.70599 * 342.22131 * 21 19 18 23 23 C 1.53405 * 108.29482 * 48.19451 * 22 21 19 24 24 O 1.35947 * 118.43245 * 179.79853 * 18 17 16 25 25 C 1.53005 * 117.50089 * 229.62255 * 9 7 2 26 26 C 1.53002 * 117.49813 * 298.28175 * 9 7 2 27 27 H 0.97000 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47551 * 298.92079 * 10 9 7 29 29 H 1.09007 * 109.47205 * 178.91657 * 10 9 7 30 30 H 1.07995 * 120.05133 * 0.11977 * 16 15 14 31 31 H 1.07999 * 119.85127 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.86639 * 179.82709 * 20 19 18 33 33 H 1.09000 * 109.44188 * 102.25436 * 21 19 18 34 34 H 1.08999 * 109.44281 * 222.13283 * 21 19 18 35 35 H 1.08997 * 109.65294 * 288.51466 * 22 21 19 36 36 H 1.09006 * 109.73167 * 167.92062 * 22 21 19 37 37 H 1.08998 * 109.67890 * 175.57920 * 23 22 21 38 38 H 1.08994 * 109.68118 * 55.06787 * 23 22 21 39 39 H 1.09003 * 117.49454 * 215.00595 * 25 9 7 40 40 H 1.08994 * 117.49806 * 0.02562 * 25 9 7 41 41 H 1.08997 * 117.49911 * 359.97350 * 26 9 7 42 42 H 1.09002 * 117.50055 * 144.97389 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6145 1.9784 -1.3934 5 1 1.3926 2.6838 0.5789 6 1 3.4828 1.4772 0.8146 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 0.0240 9 6 3.5112 -1.1943 -0.0318 10 6 4.2003 -1.0312 1.3245 11 16 3.6878 -2.3762 2.4286 12 8 4.1068 -3.6321 1.9125 13 8 2.3532 -2.1753 2.8731 14 8 4.5331 -2.1835 3.6796 15 6 4.0346 -1.2631 4.5476 16 6 4.4050 0.0691 4.4366 17 6 3.8989 0.9996 5.3204 18 6 3.0176 0.6081 6.3233 19 6 2.6459 -0.7202 6.4315 20 6 3.1559 -1.6539 5.5447 21 6 1.6884 -1.1838 7.4999 22 6 1.5987 -0.1290 8.6055 23 6 1.3858 1.2406 7.9482 24 8 2.5453 1.5556 7.1761 25 6 4.1954 -2.0868 -1.0692 26 6 4.1917 -0.5667 -1.2499 27 1 -0.4850 0.8401 -0.0004 28 1 3.9181 -0.0739 1.7627 29 1 5.2814 -1.0643 1.1891 30 1 5.0883 0.3775 3.6592 31 1 4.1880 2.0365 5.2335 32 1 2.8677 -2.6912 5.6312 33 1 0.7016 -1.3342 7.0622 34 1 2.0439 -2.1233 7.9229 35 1 2.5247 -0.1208 9.1803 36 1 0.7593 -0.3556 9.2630 37 1 1.2403 1.9985 8.7180 38 1 0.5110 1.2042 7.2990 39 1 5.1365 -2.5579 -0.7853 40 1 3.5559 -2.6734 -1.7286 41 1 3.5498 -0.1541 -2.0282 42 1 5.1303 -0.0374 -1.0851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831578077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:22 Heat of formation + Delta-G solvation = -89.985159 kcal Electronic energy + Delta-G solvation = -28288.255490 eV Core-core repulsion = 24327.496591 eV Total energy + Delta-G solvation = -3960.758899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17072 -39.94647 -37.16201 -36.82820 -36.39255 -35.29354 -34.50962 -32.18328 -30.82452 -29.85805 -28.64460 -25.93931 -25.57951 -24.05076 -23.02257 -21.72681 -21.36761 -19.69812 -19.16093 -18.00618 -17.72991 -17.51071 -17.00466 -16.52213 -15.68873 -15.66364 -15.12193 -14.75207 -14.57152 -14.42921 -14.21123 -13.90692 -13.56915 -13.38791 -13.21424 -13.01303 -12.81418 -12.64119 -12.48358 -12.37024 -11.91534 -11.45417 -11.40146 -11.30514 -11.23471 -11.16817 -10.95246 -10.88707 -10.67064 -10.58192 -10.41585 -10.10147 -9.73338 -9.19056 -8.97948 -8.68305 -8.53751 -8.19916 -6.18110 -4.26876 0.55604 1.12203 1.36625 2.79074 3.08495 3.20410 3.28781 3.30968 3.49136 4.30469 4.32302 4.34958 4.43845 4.50548 4.61361 4.64054 4.78450 4.87674 4.91836 5.03859 5.07251 5.18774 5.24486 5.31081 5.36682 5.51542 5.59673 5.65954 5.72209 5.76333 5.87169 5.92310 6.01475 6.14108 6.16343 6.16675 6.21391 6.41602 6.60019 6.65360 6.84355 7.04631 7.23545 7.56834 8.35029 8.86138 9.42945 10.93319 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.004751 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.234177 B = 5892.218336 C = 6803.271176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.093 3.907 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.087 0.913 9 C 0.002 3.998 10 C -0.601 4.601 11 S 2.595 3.405 12 O -0.942 6.942 13 O -0.928 6.928 14 O -0.681 6.681 15 C 0.056 3.944 16 C -0.099 4.099 17 C -0.129 4.129 18 C 0.142 3.858 19 C -0.143 4.143 20 C -0.056 4.056 21 C -0.081 4.081 22 C -0.159 4.159 23 C 0.057 3.943 24 O -0.312 6.312 25 C -0.175 4.175 26 C -0.185 4.185 27 H 0.267 0.733 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 2.996 15.969 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.112 4.112 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.550 4.550 8 H 0.105 0.895 9 C 0.000 4.000 10 C -0.730 4.730 11 S 2.693 3.307 12 O -0.940 6.940 13 O -0.926 6.926 14 O -0.640 6.640 15 C 0.014 3.986 16 C -0.119 4.119 17 C -0.147 4.147 18 C 0.096 3.904 19 C -0.144 4.144 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.226 6.226 25 C -0.212 4.212 26 C -0.224 4.224 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.545 2.579 16.303 17.756 hybrid contribution 0.599 1.225 -0.607 1.493 sum 7.144 3.804 15.696 17.660 Atomic orbital electron populations 1.69880 1.06368 1.27338 1.47785 1.24915 0.94501 0.98880 0.92922 0.86992 0.80335 0.83522 0.79155 1.19788 1.21616 1.18365 1.20331 0.85445 0.95473 1.53754 0.89469 1.18796 0.94910 1.02622 0.83693 1.30559 1.08643 1.19315 1.14476 1.05457 0.74168 0.76751 0.74346 1.93540 1.82538 1.39013 1.78923 1.93636 1.35989 1.86355 1.76656 1.85794 1.69388 1.62680 1.46156 1.17694 1.00320 0.86447 0.94153 1.21111 0.99941 0.90743 1.00083 1.20381 0.99916 1.00455 0.93974 1.18707 0.94567 0.87182 0.89941 1.19610 1.02768 0.92019 1.00017 1.20953 0.93510 1.00670 0.92454 1.20529 0.98837 0.99045 0.93374 1.22239 1.03811 0.95189 0.98387 1.23043 0.86631 0.97585 0.94524 1.86014 1.44559 1.39502 1.52548 1.22992 1.01372 0.92606 1.04225 1.23017 1.01183 0.95688 1.02474 0.92263 0.85277 0.87032 0.83739 0.83775 0.84207 0.89453 0.89527 0.90366 0.89437 0.87348 0.91204 0.90092 0.88560 0.88808 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.09 2.64 5.47 -17.82 -0.10 2.54 16 3 Si 0.87 20.93 25.15 -169.99 -4.27 16.66 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -5.64 5.42 56.52 0.31 -5.33 16 7 C -0.51 -14.27 8.34 -34.44 -0.29 -14.56 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 9 C 0.00 0.05 0.88 -155.66 -0.14 -0.09 16 10 C -0.60 -12.16 5.38 37.16 0.20 -11.96 16 11 S 2.59 55.40 4.84 -107.50 -0.52 54.88 16 12 O -0.94 -21.89 18.09 -67.04 -1.21 -23.10 16 13 O -0.93 -22.40 15.48 -67.04 -1.04 -23.44 16 14 O -0.68 -12.42 10.04 -52.00 -0.52 -12.94 16 15 C 0.06 0.95 4.67 -39.29 -0.18 0.76 16 16 C -0.10 -1.47 9.06 -39.51 -0.36 -1.83 16 17 C -0.13 -1.76 9.93 -39.36 -0.39 -2.15 16 18 C 0.14 1.96 6.47 -39.21 -0.25 1.71 16 19 C -0.14 -1.96 5.75 -104.45 -0.60 -2.56 16 20 C -0.06 -0.87 8.72 -39.38 -0.34 -1.22 16 21 C -0.08 -0.81 5.85 -27.82 -0.16 -0.98 16 22 C -0.16 -1.23 6.19 -26.49 -0.16 -1.39 16 23 C 0.06 0.50 7.03 37.37 0.26 0.76 16 24 O -0.31 -3.82 10.27 -19.57 -0.20 -4.02 16 25 C -0.17 -3.61 9.94 -26.69 -0.27 -3.87 16 26 C -0.18 -3.82 7.79 -26.69 -0.21 -4.03 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.13 2.54 4.98 -51.92 -0.26 2.28 16 29 H 0.11 1.81 8.11 -51.92 -0.42 1.39 16 30 H 0.14 1.79 7.63 -52.49 -0.40 1.39 16 31 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 41 H 0.09 2.01 7.56 -51.93 -0.39 1.61 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -34.77 352.97 -10.44 -45.21 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.78 Total: 6.00 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: -2.99 Total: -38.85 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -2.97 Total: -63.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.27 Total: 16.66 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.52 Total: 54.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.77 -10.44 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831578077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.776 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds