Wall clock time and date at job start Tue Mar 31 2020 20:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99768 * 2 1 4 4 H 1.48493 * 109.47116 * 264.41797 * 3 2 1 5 5 H 1.48500 * 109.47051 * 24.42217 * 3 2 1 6 6 H 1.48501 * 109.46952 * 144.41970 * 3 2 1 7 7 C 1.37872 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00384 * 358.58639 * 7 2 1 9 9 C 1.50698 * 120.00059 * 178.58161 * 7 2 1 10 10 C 1.52999 * 115.54879 * 83.94699 * 9 7 2 11 11 S 1.81400 * 109.46955 * 58.92211 * 10 9 7 12 12 O 1.42101 * 110.54599 * 63.03773 * 11 10 9 13 13 O 1.42095 * 110.54222 * 286.28655 * 11 10 9 14 14 O 1.52206 * 104.45096 * 174.66492 * 11 10 9 15 15 C 1.35979 * 114.00051 * 82.77435 * 14 11 10 16 16 C 1.38719 * 120.07109 * 269.98440 * 15 14 11 17 17 C 1.37955 * 119.90169 * 180.10828 * 16 15 14 18 18 C 1.39128 * 120.29314 * 359.97438 * 17 16 15 19 19 C 1.38348 * 119.78072 * 359.86372 * 18 17 16 20 20 C 1.38502 * 119.88646 * 0.21577 * 19 18 17 21 21 C 1.50778 * 121.41307 * 180.29606 * 19 18 17 22 22 C 1.53058 * 109.70599 * 342.22131 * 21 19 18 23 23 C 1.53405 * 108.29482 * 48.19451 * 22 21 19 24 24 O 1.35947 * 118.43245 * 179.79853 * 18 17 16 25 25 C 1.53005 * 117.50089 * 229.62255 * 9 7 2 26 26 C 1.53002 * 117.49813 * 298.28175 * 9 7 2 27 27 H 0.97000 * 119.99926 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47551 * 298.92079 * 10 9 7 29 29 H 1.09007 * 109.47205 * 178.91657 * 10 9 7 30 30 H 1.07995 * 120.05133 * 0.11977 * 16 15 14 31 31 H 1.07999 * 119.85127 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.86639 * 179.82709 * 20 19 18 33 33 H 1.09000 * 109.44188 * 102.25436 * 21 19 18 34 34 H 1.08999 * 109.44281 * 222.13283 * 21 19 18 35 35 H 1.08997 * 109.65294 * 288.51466 * 22 21 19 36 36 H 1.09006 * 109.73167 * 167.92062 * 22 21 19 37 37 H 1.08998 * 109.67890 * 175.57920 * 23 22 21 38 38 H 1.08994 * 109.68118 * 55.06787 * 23 22 21 39 39 H 1.09003 * 117.49454 * 215.00595 * 25 9 7 40 40 H 1.08994 * 117.49806 * 0.02562 * 25 9 7 41 41 H 1.08997 * 117.49911 * 359.97350 * 26 9 7 42 42 H 1.09002 * 117.50055 * 144.97389 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6145 1.9784 -1.3934 5 1 1.3926 2.6838 0.5789 6 1 3.4828 1.4772 0.8146 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 0.0240 9 6 3.5112 -1.1943 -0.0318 10 6 4.2003 -1.0312 1.3245 11 16 3.6878 -2.3762 2.4286 12 8 4.1068 -3.6321 1.9125 13 8 2.3532 -2.1753 2.8731 14 8 4.5331 -2.1835 3.6796 15 6 4.0346 -1.2631 4.5476 16 6 4.4050 0.0691 4.4366 17 6 3.8989 0.9996 5.3204 18 6 3.0176 0.6081 6.3233 19 6 2.6459 -0.7202 6.4315 20 6 3.1559 -1.6539 5.5447 21 6 1.6884 -1.1838 7.4999 22 6 1.5987 -0.1290 8.6055 23 6 1.3858 1.2406 7.9482 24 8 2.5453 1.5556 7.1761 25 6 4.1954 -2.0868 -1.0692 26 6 4.1917 -0.5667 -1.2499 27 1 -0.4850 0.8401 -0.0004 28 1 3.9181 -0.0739 1.7627 29 1 5.2814 -1.0643 1.1891 30 1 5.0883 0.3775 3.6592 31 1 4.1880 2.0365 5.2335 32 1 2.8677 -2.6912 5.6312 33 1 0.7016 -1.3342 7.0622 34 1 2.0439 -2.1233 7.9229 35 1 2.5247 -0.1208 9.1803 36 1 0.7593 -0.3556 9.2630 37 1 1.2403 1.9985 8.7180 38 1 0.5110 1.2042 7.2990 39 1 5.1365 -2.5579 -0.7853 40 1 3.5559 -2.6734 -1.7286 41 1 3.5498 -0.1541 -2.0282 42 1 5.1303 -0.0374 -1.0851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831578077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:21 Heat of formation + Delta-G solvation = -114.154851 kcal Electronic energy + Delta-G solvation = -28289.303566 eV Core-core repulsion = 24327.496591 eV Total energy + Delta-G solvation = -3961.806975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30333 -41.07377 -38.86968 -38.20925 -37.82738 -37.02487 -35.34780 -34.29822 -31.76841 -30.94048 -30.24466 -27.65471 -26.79237 -25.07410 -24.09534 -23.34248 -22.57306 -21.17707 -20.63861 -19.25933 -18.99604 -18.85486 -18.53214 -18.07457 -17.14861 -16.95709 -16.57518 -16.13711 -15.66852 -15.65354 -15.47744 -15.10536 -14.86624 -14.67734 -14.56079 -14.30009 -14.20607 -14.06908 -13.92593 -13.75765 -13.26007 -13.09630 -13.03892 -12.95046 -12.62221 -12.42029 -12.38113 -12.08010 -11.99172 -11.79866 -11.77035 -11.68448 -11.46847 -10.99583 -10.71215 -10.28662 -10.04365 -9.29375 -8.31585 -6.46157 -0.94853 0.04220 0.13721 1.32493 1.34806 1.36916 1.48071 2.16980 2.35152 2.43429 2.69841 2.94573 3.04736 3.15958 3.47466 3.55038 3.59985 3.73824 3.79809 3.91756 3.96879 4.08807 4.22577 4.29571 4.32127 4.37173 4.45461 4.55294 4.57344 4.60974 4.75147 4.85872 4.88214 4.92246 4.96398 5.04106 5.08343 5.13679 5.17933 5.22739 5.45012 5.51707 5.59751 6.19148 6.28956 6.65207 7.27682 8.84490 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.004751 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.234177 B = 5892.218336 C = 6803.271176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.032 3.968 3 Si 0.926 3.074 4 H -0.256 1.256 5 H -0.295 1.295 6 H -0.215 1.215 7 C -0.516 4.516 8 H 0.029 0.971 9 C -0.034 4.034 10 C -0.591 4.591 11 S 2.594 3.406 12 O -0.974 6.974 13 O -0.973 6.973 14 O -0.669 6.669 15 C 0.014 3.986 16 C -0.103 4.103 17 C -0.134 4.134 18 C 0.140 3.860 19 C -0.151 4.151 20 C -0.077 4.077 21 C -0.087 4.087 22 C -0.150 4.150 23 C 0.045 3.955 24 O -0.318 6.318 25 C -0.173 4.173 26 C -0.164 4.164 27 H 0.268 0.732 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.703 5.749 17.220 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.168 4.168 3 Si 0.749 3.251 4 H -0.181 1.181 5 H -0.221 1.221 6 H -0.137 1.137 7 C -0.553 4.553 8 H 0.047 0.953 9 C -0.036 4.036 10 C -0.722 4.722 11 S 2.695 3.305 12 O -0.973 6.973 13 O -0.971 6.971 14 O -0.628 6.628 15 C -0.027 4.027 16 C -0.123 4.123 17 C -0.152 4.152 18 C 0.093 3.907 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.124 4.124 22 C -0.187 4.187 23 C -0.029 4.029 24 O -0.231 6.231 25 C -0.210 4.210 26 C -0.203 4.203 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.190 0.810 31 H 0.190 0.810 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.444 5.284 17.557 20.624 hybrid contribution -0.401 0.311 -0.892 1.026 sum 9.043 5.595 16.666 19.769 Atomic orbital electron populations 1.70056 1.08728 1.28410 1.50334 1.25904 0.95236 1.03281 0.92392 0.86110 0.80526 0.77770 0.80743 1.18058 1.22147 1.13705 1.20406 0.88548 0.93306 1.53025 0.95274 1.18719 0.92405 1.06383 0.86133 1.30387 1.11547 1.18460 1.11795 1.05309 0.73510 0.76840 0.74793 1.93485 1.82793 1.41143 1.79846 1.93574 1.38901 1.86893 1.77748 1.85753 1.68124 1.63410 1.45490 1.18175 1.02393 0.87380 0.94781 1.21463 1.00113 0.89710 1.00994 1.20791 0.99374 1.01612 0.93459 1.18968 0.94221 0.87461 0.90054 1.19996 1.02898 0.91968 1.00360 1.21209 0.93938 1.01344 0.93227 1.20685 0.97712 1.00639 0.93363 1.22238 1.05295 0.93527 0.97663 1.23418 0.85239 0.99369 0.94872 1.86017 1.45583 1.39178 1.52352 1.23105 1.01988 0.93273 1.02626 1.23120 1.02017 0.95582 0.99536 0.92301 0.84268 0.81833 0.81050 0.80993 0.84412 0.89827 0.88176 0.89866 0.86575 0.84129 0.91711 0.87005 0.89950 0.89945 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.03 1.82 5.47 84.65 0.46 2.29 16 3 Si 0.93 41.50 25.15 68.60 1.73 43.23 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.21 -8.01 5.42 99.48 0.54 -7.47 16 7 C -0.52 -29.58 8.34 25.60 0.21 -29.36 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C -0.03 -1.52 0.88 -52.93 -0.05 -1.57 16 10 C -0.59 -22.14 5.38 71.98 0.39 -21.75 16 11 S 2.59 111.45 4.84 -56.49 -0.27 111.18 16 12 O -0.97 -46.10 18.09 -118.57 -2.15 -48.24 16 13 O -0.97 -49.24 15.48 -118.57 -1.84 -51.07 16 14 O -0.67 -24.17 10.04 -62.41 -0.63 -24.79 16 15 C 0.01 0.48 4.67 22.46 0.10 0.59 16 16 C -0.10 -2.83 9.06 22.32 0.20 -2.63 16 17 C -0.13 -3.35 9.93 22.42 0.22 -3.12 16 18 C 0.14 3.64 6.47 22.51 0.15 3.79 16 19 C -0.15 -4.07 5.75 -19.75 -0.11 -4.19 16 20 C -0.08 -2.46 8.72 22.40 0.20 -2.26 16 21 C -0.09 -1.67 5.85 29.89 0.18 -1.49 16 22 C -0.15 -1.93 6.19 30.75 0.19 -1.74 16 23 C 0.05 0.68 7.03 72.12 0.51 1.18 16 24 O -0.32 -7.03 10.27 -92.95 -0.95 -7.98 16 25 C -0.17 -6.76 9.94 30.62 0.30 -6.46 16 26 C -0.16 -6.11 7.79 30.62 0.24 -5.87 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.14 4.92 4.98 -2.39 -0.01 4.91 16 29 H 0.16 4.38 8.11 -2.39 -0.02 4.36 16 30 H 0.17 3.57 7.63 -2.91 -0.02 3.55 16 31 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.08 3.27 7.56 -2.39 -0.02 3.25 16 42 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -81.54 352.97 0.24 -81.30 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.87 Total: 27.89 kcal Atomic # 6 Polarization: -75.80 SS G_CDS: 3.19 Total: -72.61 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -126.53 SS G_CDS: -5.56 Total: -132.09 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.73 Total: 43.23 kcal Atomic # 16 Polarization: 111.45 SS G_CDS: -0.27 Total: 111.18 kcal Total: -81.54 0.24 -81.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831578077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.854 kcal (2) G-P(sol) polarization free energy of solvation -81.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds