Wall clock time and date at job start Tue Mar 31 2020 20:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47481 * 269.99840 * 3 2 1 5 5 H 1.48503 * 109.47045 * 30.00162 * 3 2 1 6 6 H 1.48502 * 109.47191 * 149.99877 * 3 2 1 7 7 C 1.37875 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00057 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47486 * 180.02562 * 10 9 7 12 12 O 1.45193 * 109.47597 * 179.97438 * 11 10 9 13 13 C 1.34711 * 117.00357 * 179.97438 * 12 11 10 14 14 O 1.21469 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.47725 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.39629 * 120.14854 * 180.02562 * 15 13 12 17 17 C 1.37940 * 119.84682 * 180.02562 * 16 15 13 18 18 C 1.38367 * 120.15194 * 359.97438 * 17 16 15 19 19 S 1.76200 * 119.85058 * 180.02562 * 18 17 16 20 20 O 1.42104 * 104.27401 * 333.92691 * 19 18 17 21 21 O 1.42097 * 104.27908 * 206.06945 * 19 18 17 22 22 C 1.81400 * 104.45221 * 89.99755 * 19 18 17 23 23 C 1.53000 * 117.50197 * 180.02562 * 22 19 18 24 24 C 1.52997 * 117.50001 * 111.37495 * 22 19 18 25 25 C 1.38368 * 120.29970 * 0.27262 * 18 17 16 26 26 C 1.37944 * 120.15400 * 359.45670 * 25 18 17 27 27 H 0.97001 * 119.99677 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47139 * 60.00530 * 9 7 2 29 29 H 1.09000 * 109.47237 * 299.99852 * 9 7 2 30 30 H 1.08998 * 109.47585 * 59.99580 * 10 9 7 31 31 H 1.09008 * 109.46667 * 299.99847 * 10 9 7 32 32 H 1.09008 * 109.47069 * 59.99299 * 11 10 9 33 33 H 1.08999 * 109.46681 * 300.00098 * 11 10 9 34 34 H 1.07998 * 120.07721 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.92353 * 180.02562 * 17 16 15 36 36 H 1.09002 * 115.55860 * 325.68827 * 22 19 18 37 37 H 1.08990 * 117.49990 * 145.01827 * 23 22 19 38 38 H 1.09004 * 117.49237 * 359.97438 * 23 22 19 39 39 H 1.08999 * 117.49685 * 0.02562 * 24 22 19 40 40 H 1.08999 * 117.52022 * 214.97025 * 24 22 19 41 41 H 1.08003 * 119.92183 * 179.72825 * 25 18 17 42 42 H 1.07998 * 120.08152 * 180.27495 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 8 6.0354 -4.0057 0.0027 13 6 7.3709 -4.1823 0.0033 14 8 8.1109 -3.2190 0.0038 15 6 7.9354 -5.5474 0.0032 16 6 9.3192 -5.7340 0.0043 17 6 9.8396 -7.0115 0.0038 18 6 8.9938 -8.1066 0.0026 19 16 9.6672 -9.7348 0.0025 20 8 10.9447 -9.5856 -0.6016 21 8 8.6586 -10.5312 -0.6038 22 6 9.8388 -10.1538 1.7591 23 6 10.4087 -11.5311 2.1045 24 6 8.9209 -11.2426 2.3186 25 6 7.6216 -7.9288 -0.0037 26 6 7.0877 -6.6569 0.0025 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.6584 -3.1504 -0.8892 31 1 3.6577 -3.1506 0.8908 32 1 5.9141 -2.1232 0.8927 33 1 5.9155 -2.1227 -0.8873 34 1 9.9805 -4.8802 0.0048 35 1 10.9097 -7.1573 0.0050 36 1 10.0947 -9.3239 2.4178 37 1 11.0391 -11.6071 2.9904 38 1 10.6801 -12.1855 1.2762 39 1 8.2143 -11.7073 1.6311 40 1 8.5730 -11.1293 3.3454 41 1 6.9671 -8.7879 -0.0090 42 1 6.0164 -6.5195 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835159843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:01 Heat of formation + Delta-G solvation = -107.284157 kcal Electronic energy + Delta-G solvation = -25327.376765 eV Core-core repulsion = 21365.867726 eV Total energy + Delta-G solvation = -3961.509039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74601 -39.16656 -37.86835 -37.40592 -36.68072 -36.43957 -34.17286 -32.34142 -31.76561 -31.58405 -27.79735 -25.39677 -24.06687 -23.44828 -23.22989 -22.87339 -21.19452 -20.32886 -19.47038 -18.68824 -18.00278 -17.43410 -17.07172 -16.59154 -16.53960 -16.24921 -15.78873 -15.19176 -15.08131 -14.42749 -14.33146 -14.16364 -14.07523 -13.95187 -13.39463 -13.04358 -12.79465 -12.68203 -12.49867 -12.45812 -12.32165 -12.02741 -11.82086 -11.79577 -11.74443 -11.48183 -11.13478 -11.07107 -11.03851 -10.78456 -10.54743 -10.09153 -9.94076 -9.87004 -9.78239 -9.58037 -9.29862 -8.60752 -6.10912 -4.10292 -0.53216 -0.09582 0.78863 2.07141 2.22486 2.51820 2.60605 3.08045 3.26707 3.34531 3.37020 3.37268 3.64114 3.85872 4.04417 4.16029 4.27134 4.37537 4.39176 4.48016 4.76344 4.81056 4.86908 4.93396 5.09395 5.12145 5.22057 5.25867 5.35604 5.35864 5.39745 5.50262 5.53314 5.74299 5.78919 6.18961 6.21309 6.30760 6.52058 6.70873 7.14420 7.26158 7.58896 7.70084 8.45163 8.92996 9.50368 11.02154 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.001814 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.216200 B =15429.813501 C =15990.768944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.348 6.348 13 C 0.499 3.501 14 O -0.499 6.499 15 C -0.064 4.064 16 C -0.079 4.079 17 C -0.037 4.037 18 C -0.634 4.634 19 S 2.526 3.474 20 O -0.930 6.930 21 O -0.929 6.929 22 C -0.668 4.668 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.033 4.033 26 C -0.082 4.082 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.152 0.848 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.341 -24.150 5.131 33.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.007 4.007 12 O -0.264 6.264 13 C 0.342 3.658 14 O -0.389 6.389 15 C -0.065 4.065 16 C -0.098 4.098 17 C -0.056 4.056 18 C -0.720 4.720 19 S 2.705 3.295 20 O -0.927 6.927 21 O -0.926 6.926 22 C -0.777 4.777 23 C -0.165 4.165 24 C -0.163 4.163 25 C -0.052 4.052 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.169 0.831 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 23.555 -24.173 4.414 34.039 hybrid contribution 0.167 2.045 0.638 2.149 sum 23.723 -22.128 5.052 32.832 Atomic orbital electron populations 1.69906 1.06275 1.27017 1.50685 1.25017 0.94771 0.99193 0.94434 0.86782 0.80344 0.83573 0.78617 1.20187 1.21244 1.19015 1.21036 0.88966 0.94688 1.51377 0.90773 1.19524 0.97608 0.90935 0.96728 1.21582 0.88431 1.00968 1.02954 1.23605 0.97248 0.77430 1.02393 1.86542 1.22077 1.34844 1.82939 1.21085 0.81840 0.89278 0.73557 1.90845 1.60733 1.42240 1.45032 1.19617 0.94239 0.91046 1.01623 1.21428 0.93670 0.98218 0.96496 1.20909 1.00157 0.90965 0.93526 1.30747 1.03545 1.22203 1.15546 1.04505 0.74632 0.74157 0.76220 1.93590 1.41086 1.85477 1.72541 1.93587 1.58957 1.67769 1.72308 1.32169 1.18176 1.02994 1.24347 1.22863 0.97736 0.91148 1.04764 1.22976 0.93539 0.95734 1.04023 1.20987 0.92887 0.98507 0.92816 1.21736 1.01408 0.91218 0.95739 0.92606 0.96246 0.96669 0.91393 0.91404 0.91229 0.91211 0.83333 0.83143 0.81880 0.86389 0.87255 0.85971 0.86538 0.83056 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.95 5.53 -26.73 -0.15 -2.09 16 11 C 0.07 1.10 5.47 37.16 0.20 1.31 16 12 O -0.35 -5.31 9.47 -40.52 -0.38 -5.70 16 13 C 0.50 7.20 7.90 34.61 0.27 7.48 16 14 O -0.50 -8.30 16.14 -19.24 -0.31 -8.61 16 15 C -0.06 -0.74 5.87 -104.98 -0.62 -1.35 16 16 C -0.08 -0.78 9.60 -39.17 -0.38 -1.16 16 17 C -0.04 -0.31 9.45 -39.64 -0.37 -0.68 16 18 C -0.63 -5.24 5.67 -39.49 -0.22 -5.46 16 19 S 2.53 18.73 5.52 -107.50 -0.59 18.13 16 20 O -0.93 -9.49 17.11 -57.54 -0.98 -10.47 16 21 O -0.93 -9.02 16.39 -57.54 -0.94 -9.96 16 22 C -0.67 -2.86 6.40 -26.73 -0.17 -3.03 16 23 C -0.13 -0.42 10.30 -26.70 -0.28 -0.69 16 24 C -0.12 -0.43 10.17 -26.71 -0.27 -0.70 16 25 C -0.03 -0.28 9.45 -39.64 -0.37 -0.65 16 26 C -0.08 -0.80 9.62 -39.17 -0.38 -1.18 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.15 1.34 7.65 -52.49 -0.40 0.94 16 35 H 0.15 0.93 7.56 -52.49 -0.40 0.53 16 36 H 0.16 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.12 0.40 7.66 -51.93 -0.40 0.01 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.15 0.95 7.55 -52.48 -0.40 0.56 16 42 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -36.04 375.64 -10.45 -46.49 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.73 Total: -3.95 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.27 Total: -21.71 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -2.62 Total: -34.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 18.73 SS G_CDS: -0.59 Total: 18.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -10.45 -46.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.798 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds