Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00286 * 2 1 4 4 H 1.48498 * 109.47481 * 269.99840 * 3 2 1 5 5 H 1.48503 * 109.47045 * 30.00162 * 3 2 1 6 6 H 1.48502 * 109.47191 * 149.99877 * 3 2 1 7 7 C 1.37875 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00057 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47486 * 180.02562 * 10 9 7 12 12 O 1.45193 * 109.47597 * 179.97438 * 11 10 9 13 13 C 1.34711 * 117.00357 * 179.97438 * 12 11 10 14 14 O 1.21469 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.47725 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.39629 * 120.14854 * 180.02562 * 15 13 12 17 17 C 1.37940 * 119.84682 * 180.02562 * 16 15 13 18 18 C 1.38367 * 120.15194 * 359.97438 * 17 16 15 19 19 S 1.76200 * 119.85058 * 180.02562 * 18 17 16 20 20 O 1.42104 * 104.27401 * 333.92691 * 19 18 17 21 21 O 1.42097 * 104.27908 * 206.06945 * 19 18 17 22 22 C 1.81400 * 104.45221 * 89.99755 * 19 18 17 23 23 C 1.53000 * 117.50197 * 180.02562 * 22 19 18 24 24 C 1.52997 * 117.50001 * 111.37495 * 22 19 18 25 25 C 1.38368 * 120.29970 * 0.27262 * 18 17 16 26 26 C 1.37944 * 120.15400 * 359.45670 * 25 18 17 27 27 H 0.97001 * 119.99677 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47139 * 60.00530 * 9 7 2 29 29 H 1.09000 * 109.47237 * 299.99852 * 9 7 2 30 30 H 1.08998 * 109.47585 * 59.99580 * 10 9 7 31 31 H 1.09008 * 109.46667 * 299.99847 * 10 9 7 32 32 H 1.09008 * 109.47069 * 59.99299 * 11 10 9 33 33 H 1.08999 * 109.46681 * 300.00098 * 11 10 9 34 34 H 1.07998 * 120.07721 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.92353 * 180.02562 * 17 16 15 36 36 H 1.09002 * 115.55860 * 325.68827 * 22 19 18 37 37 H 1.08990 * 117.49990 * 145.01827 * 23 22 19 38 38 H 1.09004 * 117.49237 * 359.97438 * 23 22 19 39 39 H 1.08999 * 117.49685 * 0.02562 * 24 22 19 40 40 H 1.08999 * 117.52022 * 214.97025 * 24 22 19 41 41 H 1.08003 * 119.92183 * 179.72825 * 25 18 17 42 42 H 1.07998 * 120.08152 * 180.27495 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 8 6.0354 -4.0057 0.0027 13 6 7.3709 -4.1823 0.0033 14 8 8.1109 -3.2190 0.0038 15 6 7.9354 -5.5474 0.0032 16 6 9.3192 -5.7340 0.0043 17 6 9.8396 -7.0115 0.0038 18 6 8.9938 -8.1066 0.0026 19 16 9.6672 -9.7348 0.0025 20 8 10.9447 -9.5856 -0.6016 21 8 8.6586 -10.5312 -0.6038 22 6 9.8388 -10.1538 1.7591 23 6 10.4087 -11.5311 2.1045 24 6 8.9209 -11.2426 2.3186 25 6 7.6216 -7.9288 -0.0037 26 6 7.0877 -6.6569 0.0025 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.6584 -3.1504 -0.8892 31 1 3.6577 -3.1506 0.8908 32 1 5.9141 -2.1232 0.8927 33 1 5.9155 -2.1227 -0.8873 34 1 9.9805 -4.8802 0.0048 35 1 10.9097 -7.1573 0.0050 36 1 10.0947 -9.3239 2.4178 37 1 11.0391 -11.6071 2.9904 38 1 10.6801 -12.1855 1.2762 39 1 8.2143 -11.7073 1.6311 40 1 8.5730 -11.1293 3.3454 41 1 6.9671 -8.7879 -0.0090 42 1 6.0164 -6.5195 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -129.921514 kcal Electronic energy + Delta-G solvation = -25328.358394 eV Core-core repulsion = 21365.867726 eV Total energy + Delta-G solvation = -3962.490669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82133 -40.01846 -38.39663 -37.92702 -37.82200 -37.11289 -35.97674 -33.95810 -32.93656 -32.31290 -29.52452 -26.43618 -24.79858 -24.34357 -23.94625 -23.46968 -22.27379 -22.01460 -20.07447 -19.41600 -19.06355 -18.84846 -18.11070 -17.79187 -17.66164 -16.95253 -16.34115 -16.17001 -15.89922 -15.82931 -15.76421 -15.06185 -14.80997 -14.72946 -14.53900 -14.31701 -14.11170 -13.85768 -13.76418 -13.33321 -13.18603 -12.89428 -12.68148 -12.54384 -12.43002 -12.34307 -12.18395 -12.09974 -12.08941 -11.99255 -11.79079 -11.65037 -11.44826 -11.44434 -11.37841 -10.78762 -10.67849 -10.28058 -8.31302 -6.36340 -1.13583 -0.84713 0.08459 1.10074 1.36058 1.36943 1.39384 1.48938 1.70138 2.21888 2.32797 2.34409 2.82035 3.03863 3.14009 3.32736 3.47170 3.61441 3.71718 3.79356 3.95494 3.96241 3.96589 4.06631 4.18772 4.33212 4.40082 4.59294 4.63840 4.70975 4.72204 4.75704 4.81670 4.82666 4.92869 4.93018 5.04202 5.07436 5.19548 5.43407 5.46690 5.50913 5.60568 6.24149 6.45143 6.71514 7.28140 8.85097 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.001814 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.216200 B =15429.813501 C =15990.768944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.074 3.926 12 O -0.349 6.349 13 C 0.501 3.499 14 O -0.526 6.526 15 C -0.086 4.086 16 C -0.081 4.081 17 C -0.037 4.037 18 C -0.630 4.630 19 S 2.533 3.467 20 O -0.962 6.962 21 O -0.957 6.957 22 C -0.658 4.658 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.036 4.036 26 C -0.084 4.084 27 H 0.267 0.733 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.172 0.828 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.668 -24.867 6.217 36.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.055 0.945 9 C -0.047 4.047 10 C -0.130 4.130 11 C 0.001 3.999 12 O -0.265 6.265 13 C 0.347 3.653 14 O -0.416 6.416 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.056 4.056 18 C -0.716 4.716 19 S 2.715 3.285 20 O -0.959 6.959 21 O -0.954 6.954 22 C -0.771 4.771 23 C -0.168 4.168 24 C -0.164 4.164 25 C -0.054 4.054 26 C -0.103 4.103 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.189 0.811 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 25.890 -24.896 5.456 36.330 hybrid contribution -0.567 2.056 0.346 2.161 sum 25.323 -22.839 5.802 34.591 Atomic orbital electron populations 1.70059 1.08260 1.28240 1.52341 1.26004 0.95649 1.03519 0.94075 0.85672 0.79557 0.78266 0.79254 1.19183 1.20919 1.16883 1.21395 0.91676 0.93366 1.50736 0.94542 1.19456 0.94334 0.93691 0.97266 1.21332 0.90405 0.98467 1.02798 1.23297 0.95333 0.78369 1.02893 1.86521 1.23013 1.33789 1.83197 1.21568 0.81043 0.90266 0.72432 1.90825 1.60969 1.43303 1.46538 1.19560 0.95086 0.89731 1.04315 1.21554 0.93083 0.99108 0.96268 1.21176 1.01341 0.90279 0.92784 1.30979 1.03593 1.22767 1.14249 1.04187 0.73396 0.73269 0.77659 1.93550 1.42021 1.85657 1.74684 1.93550 1.59515 1.68020 1.74341 1.31893 1.19899 1.04444 1.20818 1.23177 0.98076 0.89868 1.05681 1.23201 0.93717 0.94594 1.04921 1.21244 0.93368 0.98588 0.92213 1.21844 1.01618 0.91310 0.95491 0.92407 0.95511 0.95749 0.91711 0.91558 0.90690 0.90825 0.82891 0.81018 0.79823 0.84339 0.86883 0.86140 0.84679 0.81082 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 43.72 27.47 68.60 1.88 45.60 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 7 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.49 5.53 30.59 0.17 -3.32 16 11 C 0.07 2.39 5.47 71.98 0.39 2.79 16 12 O -0.35 -10.41 9.47 -56.20 -0.53 -10.95 16 13 C 0.50 14.21 7.90 70.33 0.56 14.76 16 14 O -0.53 -17.21 16.14 19.94 0.32 -16.89 16 15 C -0.09 -1.91 5.87 -20.10 -0.12 -2.03 16 16 C -0.08 -1.52 9.60 22.54 0.22 -1.30 16 17 C -0.04 -0.57 9.45 22.23 0.21 -0.36 16 18 C -0.63 -9.45 5.67 22.33 0.13 -9.32 16 19 S 2.53 34.00 5.52 -56.49 -0.31 33.69 16 20 O -0.96 -18.68 17.11 -127.65 -2.18 -20.86 16 21 O -0.96 -17.70 16.39 -127.65 -2.09 -19.79 16 22 C -0.66 -3.84 6.40 30.59 0.20 -3.64 16 23 C -0.13 -0.47 10.30 30.61 0.32 -0.16 16 24 C -0.13 -0.50 10.17 30.61 0.31 -0.19 16 25 C -0.04 -0.55 9.45 22.23 0.21 -0.34 16 26 C -0.08 -1.56 9.62 22.54 0.22 -1.34 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.03 1.18 7.20 -2.39 -0.02 1.16 16 29 H 0.02 1.06 7.57 -2.39 -0.02 1.05 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.15 2.65 7.65 -2.91 -0.02 2.63 16 35 H 0.17 1.79 7.56 -2.91 -0.02 1.77 16 36 H 0.18 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.12 0.55 7.66 -2.39 -0.02 0.53 16 40 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.17 1.87 7.55 -2.91 -0.02 1.85 16 42 H 0.16 2.69 7.61 -2.91 -0.02 2.67 16 Total: -1.00 -78.38 375.64 1.99 -76.39 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.97 Total: 5.80 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.63 Total: -34.19 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.30 Total: -58.81 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -4.49 Total: -68.48 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.31 Total: 33.69 kcal Total: -78.38 1.99 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.529 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds