Wall clock time and date at job start Tue Mar 31 2020 20:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99715 * 3 2 1 6 6 H 1.48497 * 109.47406 * 59.99609 * 3 2 1 7 7 C 1.37885 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46957 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47464 * 179.97438 * 10 9 7 12 12 C 1.34702 * 117.00356 * 179.97438 * 11 10 9 13 13 O 1.21473 * 120.00118 * 359.97438 * 12 11 10 14 14 C 1.47731 * 119.99950 * 180.02562 * 12 11 10 15 15 C 1.39627 * 120.14573 * 180.02562 * 14 12 11 16 16 C 1.37952 * 119.84471 * 180.02562 * 15 14 12 17 17 C 1.38364 * 120.14849 * 0.25972 * 16 15 14 18 18 S 1.76203 * 119.84905 * 179.74262 * 17 16 15 19 19 O 1.42099 * 104.27865 * 206.06726 * 18 17 16 20 20 O 1.42106 * 104.27303 * 333.92629 * 18 17 16 21 21 C 1.81400 * 104.44841 * 89.99580 * 18 17 16 22 22 C 1.53001 * 109.47218 * 180.02562 * 21 18 17 23 23 C 1.52995 * 117.49823 * 243.62199 * 22 21 18 24 24 C 1.52996 * 60.00185 * 252.50776 * 23 22 21 25 25 C 1.38374 * 120.30480 * 359.47941 * 17 16 15 26 26 C 1.37948 * 120.14663 * 0.51733 * 25 17 16 27 27 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47652 * 59.99431 * 9 7 2 29 29 H 1.09004 * 109.46419 * 299.99173 * 9 7 2 30 30 H 1.09000 * 109.47656 * 59.99505 * 10 9 7 31 31 H 1.09001 * 109.47269 * 299.99798 * 10 9 7 32 32 H 1.07999 * 120.08003 * 359.97438 * 15 14 12 33 33 H 1.08002 * 119.92227 * 179.97438 * 16 15 14 34 34 H 1.09008 * 109.47281 * 300.00061 * 21 18 17 35 35 H 1.08997 * 109.47632 * 60.00220 * 21 18 17 36 36 H 1.09009 * 115.54857 * 29.33062 * 22 21 18 37 37 H 1.08992 * 117.50280 * 359.97438 * 23 22 21 38 38 H 1.09003 * 117.49616 * 145.01834 * 23 22 21 39 39 H 1.09004 * 117.49933 * 252.51580 * 24 23 22 40 40 H 1.09000 * 117.49856 * 107.48581 * 24 23 22 41 41 H 1.07994 * 119.92600 * 180.23807 * 25 17 16 42 42 H 1.07997 * 120.07318 * 179.76396 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2526 -6.0494 0.0007 13 8 3.4657 -5.9859 -0.0007 14 6 1.5819 -7.3656 0.0007 15 6 2.3393 -8.5386 0.0008 16 6 1.7065 -9.7644 0.0002 17 6 0.3246 -9.8331 -0.0058 18 16 -0.4755 -11.4030 -0.0133 19 8 -1.7342 -11.1520 -0.6231 20 8 0.4701 -12.2752 -0.6169 21 6 -0.6883 -11.8109 1.7414 22 6 -1.3803 -13.1695 1.8689 23 6 -2.7619 -13.1997 2.5254 24 6 -1.5465 -13.7485 3.2753 25 6 -0.4321 -8.6746 -0.0005 26 6 0.1878 -7.4422 0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.8718 -3.6044 0.8904 31 1 2.8717 -3.6045 -0.8895 32 1 3.4180 -8.4864 0.0004 33 1 2.2911 -10.6725 -0.0001 34 1 0.2874 -11.8537 2.2254 35 1 -1.2985 -11.0456 2.2210 36 1 -1.1941 -13.8702 1.0549 37 1 -3.1777 -12.2518 2.8669 38 1 -3.4851 -13.9203 2.1433 39 1 -1.4700 -14.8302 3.3865 40 1 -1.1628 -13.1615 4.1097 41 1 -1.5104 -8.7353 -0.0013 42 1 -0.4040 -6.5388 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835268028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:09 Heat of formation + Delta-G solvation = -112.007916 kcal Electronic energy + Delta-G solvation = -25398.968931 eV Core-core repulsion = 21437.255054 eV Total energy + Delta-G solvation = -3961.713877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45868 -38.92979 -38.11781 -37.48187 -36.32335 -36.24653 -33.44298 -32.10361 -31.46045 -30.26637 -29.87522 -25.78907 -24.42445 -23.14817 -22.96348 -21.74430 -21.28821 -20.73243 -19.43690 -18.42572 -17.76630 -17.20447 -16.71825 -16.39461 -16.10415 -16.02054 -15.49293 -15.07354 -15.03160 -14.89367 -14.57586 -13.94511 -13.91096 -13.77097 -13.70340 -13.01513 -12.75540 -12.47166 -12.43230 -12.41958 -12.34747 -12.08213 -11.85273 -11.62340 -11.35559 -11.28791 -11.11938 -10.85850 -10.85176 -10.78388 -10.56726 -10.43182 -9.83021 -9.72885 -9.69727 -9.43515 -9.35728 -8.50524 -6.16292 -4.20883 -0.44875 0.05462 0.93385 2.28775 2.45976 2.88393 3.06170 3.23863 3.24598 3.31628 3.36334 3.50349 3.72012 3.86527 4.19490 4.32606 4.33369 4.38749 4.42303 4.51342 4.66207 4.79720 4.84079 4.92244 5.06529 5.09917 5.20634 5.25384 5.33254 5.46865 5.53155 5.55012 5.66552 5.70031 5.94629 5.98126 5.98547 6.36881 6.52767 6.75613 7.46729 7.53604 7.78188 7.98071 8.16572 8.84669 9.43952 10.95196 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001888 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.920303 B =14824.573326 C =15354.382391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.494 3.506 13 O -0.504 6.504 14 C -0.060 4.060 15 C -0.081 4.081 16 C -0.037 4.037 17 C -0.642 4.642 18 S 2.500 3.500 19 O -0.928 6.928 20 O -0.933 6.933 21 C -0.575 4.575 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.162 4.162 25 C -0.036 4.036 26 C -0.082 4.082 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.151 0.849 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -28.591 5.835 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.338 3.662 13 O -0.394 6.394 14 C -0.061 4.061 15 C -0.100 4.100 16 C -0.056 4.056 17 C -0.728 4.728 18 S 2.680 3.320 19 O -0.926 6.926 20 O -0.930 6.930 21 C -0.704 4.704 22 C -0.181 4.181 23 C -0.207 4.207 24 C -0.200 4.200 25 C -0.055 4.055 26 C -0.101 4.101 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.168 0.832 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.904 -28.827 5.098 29.534 hybrid contribution 0.963 1.739 0.600 2.077 sum -2.941 -27.088 5.698 27.836 Atomic orbital electron populations 1.69976 1.06098 1.26974 1.49679 1.24988 0.94938 0.99449 0.94790 0.86401 0.80038 0.83053 0.77739 1.19582 1.20784 1.20809 1.21000 0.93237 0.90012 1.52318 0.92148 1.19191 0.94179 0.88930 0.98981 1.23760 0.96521 0.78185 1.01248 1.86574 1.41960 1.15633 1.82286 1.21082 0.85750 0.85641 0.73718 1.90818 1.14899 1.88318 1.45381 1.19710 0.94295 0.91332 1.00812 1.21437 1.01333 0.90589 0.96597 1.20893 0.92260 0.98775 0.93692 1.30797 1.05059 1.20763 1.16168 1.05439 0.74740 0.74230 0.77595 1.93592 1.41920 1.84370 1.72671 1.93586 1.62381 1.64065 1.72985 1.29926 1.10591 1.04825 1.25038 1.21714 1.01337 0.95435 0.99584 1.23183 0.90527 1.03960 1.03038 1.23026 1.01907 1.01463 0.93567 1.20996 1.00593 0.90793 0.93140 1.21771 0.93579 0.99193 0.95528 0.92698 0.95236 0.95262 0.92012 0.91985 0.83385 0.83227 0.84074 0.84256 0.86455 0.87858 0.87770 0.87949 0.88065 0.83151 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.62 5.41 37.16 0.20 1.82 16 11 O -0.35 -6.70 9.47 -40.50 -0.38 -7.08 16 12 C 0.49 8.54 7.90 34.61 0.27 8.81 16 13 O -0.50 -9.71 16.14 -19.25 -0.31 -10.02 16 14 C -0.06 -0.82 5.87 -104.98 -0.62 -1.43 16 15 C -0.08 -0.92 9.60 -39.17 -0.38 -1.29 16 16 C -0.04 -0.35 9.45 -39.64 -0.37 -0.73 16 17 C -0.64 -5.95 5.66 -39.48 -0.22 -6.18 16 18 S 2.50 20.34 5.10 -107.50 -0.55 19.79 16 19 O -0.93 -10.25 17.12 -57.54 -0.98 -11.23 16 20 O -0.93 -10.05 17.11 -57.54 -0.98 -11.03 16 21 C -0.57 -2.70 6.26 37.16 0.23 -2.46 16 22 C -0.16 -0.86 5.75 -90.62 -0.52 -1.38 16 23 C -0.17 -0.80 10.18 -26.74 -0.27 -1.07 16 24 C -0.16 -0.68 10.25 -26.73 -0.27 -0.96 16 25 C -0.04 -0.36 9.45 -39.64 -0.37 -0.73 16 26 C -0.08 -0.97 9.62 -39.17 -0.38 -1.34 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.15 1.56 7.65 -52.49 -0.40 1.16 16 33 H 0.15 1.04 7.56 -52.49 -0.40 0.65 16 34 H 0.14 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.14 0.42 7.88 -51.93 -0.41 0.01 16 36 H 0.12 0.58 8.06 -51.92 -0.42 0.17 16 37 H 0.10 0.42 8.03 -51.93 -0.42 0.00 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.15 1.15 7.56 -52.49 -0.40 0.75 16 42 H 0.15 1.76 7.61 -52.49 -0.40 1.36 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -35.54 379.93 -10.79 -46.33 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.76 Total: -3.64 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.26 Total: -19.77 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.74 Total: -25.18 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.66 Total: -39.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 20.34 SS G_CDS: -0.55 Total: 19.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.54 -10.79 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835268028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.673 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds