Wall clock time and date at job start Tue Mar 31 2020 20:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00434 * 2 1 4 4 H 1.48498 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99715 * 3 2 1 6 6 H 1.48497 * 109.47406 * 59.99609 * 3 2 1 7 7 C 1.37885 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46957 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.47464 * 179.97438 * 10 9 7 12 12 C 1.34702 * 117.00356 * 179.97438 * 11 10 9 13 13 O 1.21473 * 120.00118 * 359.97438 * 12 11 10 14 14 C 1.47731 * 119.99950 * 180.02562 * 12 11 10 15 15 C 1.39627 * 120.14573 * 180.02562 * 14 12 11 16 16 C 1.37952 * 119.84471 * 180.02562 * 15 14 12 17 17 C 1.38364 * 120.14849 * 0.25972 * 16 15 14 18 18 S 1.76203 * 119.84905 * 179.74262 * 17 16 15 19 19 O 1.42099 * 104.27865 * 206.06726 * 18 17 16 20 20 O 1.42106 * 104.27303 * 333.92629 * 18 17 16 21 21 C 1.81400 * 104.44841 * 89.99580 * 18 17 16 22 22 C 1.53001 * 109.47218 * 180.02562 * 21 18 17 23 23 C 1.52995 * 117.49823 * 243.62199 * 22 21 18 24 24 C 1.52996 * 60.00185 * 252.50776 * 23 22 21 25 25 C 1.38374 * 120.30480 * 359.47941 * 17 16 15 26 26 C 1.37948 * 120.14663 * 0.51733 * 25 17 16 27 27 H 0.97000 * 119.99609 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47652 * 59.99431 * 9 7 2 29 29 H 1.09004 * 109.46419 * 299.99173 * 9 7 2 30 30 H 1.09000 * 109.47656 * 59.99505 * 10 9 7 31 31 H 1.09001 * 109.47269 * 299.99798 * 10 9 7 32 32 H 1.07999 * 120.08003 * 359.97438 * 15 14 12 33 33 H 1.08002 * 119.92227 * 179.97438 * 16 15 14 34 34 H 1.09008 * 109.47281 * 300.00061 * 21 18 17 35 35 H 1.08997 * 109.47632 * 60.00220 * 21 18 17 36 36 H 1.09009 * 115.54857 * 29.33062 * 22 21 18 37 37 H 1.08992 * 117.50280 * 359.97438 * 23 22 21 38 38 H 1.09003 * 117.49616 * 145.01834 * 23 22 21 39 39 H 1.09004 * 117.49933 * 252.51580 * 24 23 22 40 40 H 1.09000 * 117.49856 * 107.48581 * 24 23 22 41 41 H 1.07994 * 119.92600 * 180.23807 * 25 17 16 42 42 H 1.07997 * 120.07318 * 179.76396 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2526 -6.0494 0.0007 13 8 3.4657 -5.9859 -0.0007 14 6 1.5819 -7.3656 0.0007 15 6 2.3393 -8.5386 0.0008 16 6 1.7065 -9.7644 0.0002 17 6 0.3246 -9.8331 -0.0058 18 16 -0.4755 -11.4030 -0.0133 19 8 -1.7342 -11.1520 -0.6231 20 8 0.4701 -12.2752 -0.6169 21 6 -0.6883 -11.8109 1.7414 22 6 -1.3803 -13.1695 1.8689 23 6 -2.7619 -13.1997 2.5254 24 6 -1.5465 -13.7485 3.2753 25 6 -0.4321 -8.6746 -0.0005 26 6 0.1878 -7.4422 0.0001 27 1 -0.4849 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8904 30 1 2.8718 -3.6044 0.8904 31 1 2.8717 -3.6045 -0.8895 32 1 3.4180 -8.4864 0.0004 33 1 2.2911 -10.6725 -0.0001 34 1 0.2874 -11.8537 2.2254 35 1 -1.2985 -11.0456 2.2210 36 1 -1.1941 -13.8702 1.0549 37 1 -3.1777 -12.2518 2.8669 38 1 -3.4851 -13.9203 2.1433 39 1 -1.4700 -14.8302 3.3865 40 1 -1.1628 -13.1615 4.1097 41 1 -1.5104 -8.7353 -0.0013 42 1 -0.4040 -6.5388 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835268028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:09 Heat of formation + Delta-G solvation = -133.693761 kcal Electronic energy + Delta-G solvation = -25399.909300 eV Core-core repulsion = 21437.255054 eV Total energy + Delta-G solvation = -3962.654246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76583 -39.98327 -38.44750 -38.22588 -37.79863 -37.05389 -35.49375 -33.18284 -32.34155 -32.09865 -30.28637 -27.45322 -25.82978 -24.03354 -23.24942 -23.10435 -22.33611 -21.86532 -20.12263 -19.47944 -18.89521 -18.31376 -17.92558 -17.70213 -17.64356 -16.99961 -16.55428 -16.04551 -15.87133 -15.80251 -15.34907 -15.26682 -14.93364 -14.71591 -14.41139 -14.31534 -14.11826 -14.03093 -13.21624 -13.20978 -13.13086 -13.08182 -12.79943 -12.66370 -12.63449 -12.42805 -12.39132 -12.34229 -12.15031 -11.90500 -11.60158 -11.56863 -11.41014 -11.19751 -10.98316 -10.65635 -10.62192 -10.26928 -8.29527 -6.42568 -1.12734 -0.84505 0.09432 1.12658 1.38954 1.40456 1.49039 1.56497 1.78851 2.31257 2.37882 2.73248 2.85579 3.05238 3.09102 3.39563 3.46952 3.61387 3.73119 3.86518 4.00568 4.07686 4.09047 4.16272 4.16839 4.17676 4.39890 4.41501 4.54822 4.62590 4.76832 4.77696 4.82625 4.84013 5.05363 5.05692 5.15081 5.17289 5.27896 5.42177 5.42931 5.52559 5.69848 6.03283 6.49970 6.71070 7.27321 8.83185 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.001888 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.920303 B =14824.573326 C =15354.382391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.355 6.355 12 C 0.496 3.504 13 O -0.529 6.529 14 C -0.085 4.085 15 C -0.081 4.081 16 C -0.033 4.033 17 C -0.633 4.633 18 S 2.507 3.493 19 O -0.962 6.962 20 O -0.962 6.962 21 C -0.551 4.551 22 C -0.183 4.183 23 C -0.180 4.180 24 C -0.154 4.154 25 C -0.036 4.036 26 C -0.087 4.087 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.173 0.827 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 -29.934 7.038 30.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.271 6.271 12 C 0.342 3.658 13 O -0.420 6.420 14 C -0.086 4.086 15 C -0.100 4.100 16 C -0.052 4.052 17 C -0.718 4.718 18 S 2.690 3.310 19 O -0.959 6.959 20 O -0.959 6.959 21 C -0.683 4.683 22 C -0.203 4.203 23 C -0.217 4.217 24 C -0.192 4.192 25 C -0.055 4.055 26 C -0.106 4.106 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.171 0.829 33 H 0.195 0.805 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.190 0.810 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.581 -30.167 6.258 31.017 hybrid contribution 0.777 1.955 0.274 2.122 sum -2.804 -28.212 6.532 29.094 Atomic orbital electron populations 1.70091 1.07763 1.28251 1.50324 1.25956 0.95860 1.03394 0.94073 0.85271 0.78886 0.78091 0.78021 1.18661 1.20116 1.20011 1.21395 0.93733 0.91175 1.52531 0.91659 1.18992 0.94330 0.90419 0.96902 1.23277 0.95203 0.78465 1.01347 1.86553 1.42044 1.15625 1.82883 1.21723 0.85629 0.86027 0.72469 1.90793 1.15880 1.88562 1.46765 1.19588 0.95086 0.89723 1.04247 1.21570 1.01638 0.90496 0.96250 1.21212 0.92575 0.98913 0.92474 1.31099 1.05153 1.21283 1.14281 1.05242 0.73414 0.73086 0.79254 1.93551 1.42823 1.84509 1.74997 1.93548 1.62969 1.64219 1.75180 1.29759 1.12770 1.05300 1.20493 1.21874 1.02144 0.95754 1.00516 1.23338 0.90635 1.04570 1.03174 1.23149 1.00975 1.02148 0.92906 1.21239 1.01787 0.90059 0.92391 1.21813 0.92911 1.00131 0.95758 0.92301 0.97402 0.97202 0.91737 0.91970 0.82883 0.80483 0.81331 0.81920 0.86635 0.87215 0.87507 0.87186 0.87051 0.80999 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.63 5.35 29.85 0.16 1.79 16 10 C 0.09 3.99 5.41 71.98 0.39 4.38 16 11 O -0.35 -14.07 9.47 -56.12 -0.53 -14.60 16 12 C 0.50 17.48 7.90 70.33 0.56 18.03 16 13 O -0.53 -20.69 16.14 19.93 0.32 -20.37 16 14 C -0.09 -2.31 5.87 -20.10 -0.12 -2.43 16 15 C -0.08 -1.76 9.60 22.54 0.22 -1.54 16 16 C -0.03 -0.56 9.45 22.23 0.21 -0.35 16 17 C -0.63 -10.49 5.66 22.33 0.13 -10.36 16 18 S 2.51 35.91 5.10 -56.49 -0.29 35.62 16 19 O -0.96 -20.06 17.12 -127.65 -2.19 -22.24 16 20 O -0.96 -19.18 17.11 -127.65 -2.18 -21.36 16 21 C -0.55 -3.30 6.26 71.98 0.45 -2.85 16 22 C -0.18 -1.47 5.75 -10.79 -0.06 -1.53 16 23 C -0.18 -1.27 10.18 30.59 0.31 -0.95 16 24 C -0.15 -0.84 10.25 30.59 0.31 -0.53 16 25 C -0.04 -0.66 9.45 22.23 0.21 -0.45 16 26 C -0.09 -2.03 9.62 22.54 0.22 -1.82 16 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.15 3.12 7.65 -2.91 -0.02 3.09 16 33 H 0.18 1.97 7.56 -2.91 -0.02 1.94 16 34 H 0.17 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.16 0.31 7.88 -2.39 -0.02 0.29 16 36 H 0.12 0.95 8.06 -2.38 -0.02 0.93 16 37 H 0.11 0.61 8.03 -2.39 -0.02 0.59 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.17 2.32 7.56 -2.91 -0.02 2.30 16 42 H 0.15 3.53 7.61 -2.91 -0.02 3.51 16 Total: -1.00 -77.44 379.93 2.15 -75.29 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.03 Total: 5.32 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 3.68 Total: -28.46 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.48 kcal Atomic # 8 Polarization: -74.00 SS G_CDS: -4.58 Total: -78.58 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 35.91 SS G_CDS: -0.29 Total: 35.62 kcal Total: -77.44 2.15 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835268028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.400 kcal (2) G-P(sol) polarization free energy of solvation -77.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds