Wall clock time and date at job start Tue Mar 31 2020 21:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46698 * 2 1 4 4 H 1.08995 * 109.47170 * 304.99854 * 3 2 1 5 5 C 1.50709 * 109.46657 * 185.00010 * 3 2 1 6 6 H 1.08000 * 119.99326 * 239.99617 * 5 3 2 7 7 C 1.37878 * 120.00103 * 60.00140 * 5 3 2 8 8 N 1.31518 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99982 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47288 * 119.99802 * 9 7 5 12 12 H 1.48501 * 109.46911 * 239.99748 * 9 7 5 13 13 O 1.45198 * 109.47279 * 65.00278 * 3 2 1 14 14 C 1.34718 * 116.99774 * 269.99858 * 13 3 2 15 15 O 1.21471 * 119.99941 * 0.27067 * 14 13 3 16 16 C 1.47726 * 119.99738 * 180.02562 * 14 13 3 17 17 C 1.39620 * 120.15154 * 359.72570 * 16 14 13 18 18 C 1.37945 * 119.84967 * 179.70016 * 17 16 14 19 19 C 1.38373 * 120.14310 * 0.57698 * 18 17 16 20 20 S 1.76209 * 119.84565 * 179.69989 * 19 18 17 21 21 O 1.42101 * 104.27772 * 26.09031 * 20 19 18 22 22 O 1.42095 * 104.27516 * 153.94559 * 20 19 18 23 23 C 1.81400 * 104.44818 * 270.01820 * 20 19 18 24 24 C 1.52998 * 117.49523 * 253.62446 * 23 20 19 25 25 C 1.52992 * 117.50015 * 185.00090 * 23 20 19 26 26 C 1.38365 * 120.30783 * 359.71440 * 19 18 17 27 27 C 1.37946 * 120.14520 * 359.97438 * 26 19 18 28 28 H 1.09002 * 109.47660 * 59.99833 * 1 2 3 29 29 H 1.08996 * 109.47389 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47254 * 299.99937 * 1 2 3 31 31 H 1.08995 * 109.47263 * 240.00060 * 2 1 3 32 32 H 1.08997 * 109.47098 * 119.99715 * 2 1 3 33 33 H 0.96999 * 119.99223 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.07951 * 359.97429 * 17 16 14 35 35 H 1.08002 * 119.93193 * 180.28974 * 18 17 16 36 36 H 1.09003 * 115.55029 * 39.32898 * 23 20 19 37 37 H 1.08998 * 117.50263 * 359.97438 * 24 23 20 38 38 H 1.09007 * 117.49867 * 145.02383 * 24 23 20 39 39 H 1.08995 * 117.50200 * 214.97932 * 25 23 20 40 40 H 1.09006 * 117.50097 * 359.97438 * 25 23 20 41 41 H 1.07993 * 119.92704 * 180.02562 * 26 19 18 42 42 H 1.08002 * 120.07267 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8801 -1.3811 10 1 6.5987 1.5453 -0.1936 11 1 6.4961 -0.5189 -1.4626 12 1 6.3999 1.6157 -2.6092 13 8 1.6558 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2294 2.7355 0.2617 16 6 0.0122 3.4111 2.4837 17 6 0.8068 3.3950 3.6317 18 6 0.3777 4.0404 4.7728 19 6 -0.8426 4.6926 4.7850 20 16 -1.3866 5.5078 6.2494 21 8 -0.1857 5.8360 6.9346 22 8 -2.2632 6.5231 5.7802 23 6 -2.3110 4.2383 7.1574 24 6 -3.8361 4.3574 7.1824 25 6 -3.0238 4.6664 8.4416 26 6 -1.6378 4.7075 3.6528 27 6 -1.2178 4.0715 2.5030 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0611 -2.9498 34 1 1.7572 2.8821 3.6250 35 1 0.9934 4.0327 5.6601 36 1 -1.8845 3.2356 7.1288 37 1 -4.2840 5.1988 6.6537 38 1 -4.4134 3.4328 7.1702 39 1 -3.0667 3.9453 9.2578 40 1 -2.9370 5.7108 8.7413 41 1 -2.5889 5.2187 3.6690 42 1 -1.8396 4.0834 1.6200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835338868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:55 Heat of formation + Delta-G solvation = -104.862647 kcal Electronic energy + Delta-G solvation = -26547.595792 eV Core-core repulsion = 22586.191757 eV Total energy + Delta-G solvation = -3961.404035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15319 -38.69628 -37.72817 -37.20035 -36.24683 -35.90119 -33.63289 -31.87668 -31.29385 -31.22342 -27.42370 -25.03945 -23.89150 -23.20965 -23.15139 -22.85218 -21.06033 -19.71076 -19.22631 -18.39541 -17.68934 -17.05830 -16.78445 -16.14142 -15.95661 -15.53156 -15.42525 -14.91872 -14.73972 -14.52730 -14.00827 -13.73138 -13.56189 -13.26836 -12.95668 -12.81299 -12.48950 -12.30803 -12.20279 -12.17424 -11.66497 -11.65048 -11.61204 -11.48778 -11.35002 -11.26386 -11.19951 -11.02847 -10.83005 -10.72543 -10.33875 -9.94569 -9.79608 -9.52530 -9.48179 -9.24338 -8.89400 -8.52789 -6.25136 -4.32519 -0.29643 0.28789 1.12956 2.39548 2.63221 2.82944 3.19762 3.25584 3.29804 3.42840 3.44488 3.71059 3.81989 4.03171 4.24559 4.27205 4.32272 4.60830 4.69054 4.93090 5.05910 5.07047 5.10801 5.13520 5.25152 5.35520 5.38512 5.45579 5.71322 5.87021 5.95704 6.14584 6.19106 6.23955 6.37335 6.57077 6.76963 6.86049 7.07414 7.11599 7.53193 7.64385 7.82522 8.06347 8.46461 8.78256 9.32939 10.81733 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002469 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.066121 B =11337.168008 C =11887.793046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.347 6.347 14 C 0.489 3.511 15 O -0.502 6.502 16 C -0.054 4.054 17 C -0.085 4.085 18 C -0.038 4.038 19 C -0.640 4.640 20 S 2.528 3.472 21 O -0.931 6.931 22 O -0.933 6.933 23 C -0.667 4.667 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.035 4.035 27 C -0.084 4.084 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.267 0.733 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 5.906 19.135 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.263 6.263 14 C 0.332 3.668 15 O -0.393 6.393 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.057 4.057 19 C -0.727 4.727 20 S 2.707 3.293 21 O -0.928 6.928 22 O -0.930 6.930 23 C -0.776 4.776 24 C -0.163 4.163 25 C -0.166 4.166 26 C -0.054 4.054 27 C -0.103 4.103 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.579 6.615 18.849 24.154 hybrid contribution 1.002 -1.155 -0.777 1.715 sum -12.577 5.459 18.072 22.684 Atomic orbital electron populations 1.21871 0.98379 0.99136 1.00702 1.22033 0.92627 0.99200 1.03529 1.20785 0.95241 0.88797 0.78261 0.93328 1.21058 0.89444 1.39117 1.06391 0.91186 1.24890 0.99369 0.94669 0.95011 1.69896 1.35387 1.37727 1.09467 0.86212 0.83695 0.77914 0.78292 1.19433 1.20671 1.20715 1.86537 1.33180 1.62083 1.44468 1.20926 0.81471 0.77271 0.87114 1.90795 1.55337 1.58124 1.35013 1.19880 0.95238 0.97385 0.93033 1.21741 1.00202 0.97068 0.91380 1.20954 0.93250 0.92276 0.99217 1.30589 1.05412 1.17762 1.18946 1.04382 0.74952 0.75268 0.74660 1.93584 1.43820 1.81408 1.73990 1.93568 1.67765 1.52041 1.79667 1.32196 1.09042 1.20238 1.16079 1.22935 0.87722 1.05449 1.00219 1.22834 0.99708 1.03464 0.90584 1.20839 0.98707 0.94759 0.91053 1.21439 0.94925 0.95013 0.98937 0.92731 0.94678 0.95082 0.87159 0.93863 0.92354 0.82947 0.83457 0.81845 0.86093 0.86683 0.86496 0.87333 0.83469 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.56 37.16 0.32 -2.74 16 2 C -0.14 -3.28 5.49 -26.73 -0.15 -3.43 16 3 C 0.22 5.72 2.25 -27.88 -0.06 5.66 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.25 8.90 -34.44 -0.31 -14.56 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.35 -7.94 9.06 -40.54 -0.37 -8.31 16 14 C 0.49 10.03 6.36 34.61 0.22 10.25 16 15 O -0.50 -11.27 13.51 -19.24 -0.26 -11.53 16 16 C -0.05 -0.87 5.87 -104.99 -0.62 -1.49 16 17 C -0.08 -1.19 9.62 -39.17 -0.38 -1.57 16 18 C -0.04 -0.45 9.45 -39.64 -0.37 -0.82 16 19 C -0.64 -7.11 5.66 -39.49 -0.22 -7.33 16 20 S 2.53 24.08 5.52 -107.50 -0.59 23.49 16 21 O -0.93 -11.55 17.11 -57.54 -0.98 -12.53 16 22 O -0.93 -10.76 16.42 -57.54 -0.94 -11.71 16 23 C -0.67 -4.09 6.40 -26.74 -0.17 -4.26 16 24 C -0.13 -0.61 10.17 -26.73 -0.27 -0.89 16 25 C -0.13 -0.61 10.30 -26.74 -0.28 -0.89 16 26 C -0.03 -0.39 9.45 -39.64 -0.37 -0.77 16 27 C -0.08 -1.15 9.60 -39.17 -0.38 -1.53 16 28 H 0.05 1.22 7.79 -51.93 -0.40 0.81 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.63 6.05 -51.93 -0.31 0.32 16 31 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.15 2.08 7.61 -52.49 -0.40 1.68 16 35 H 0.15 1.39 7.56 -52.49 -0.40 0.99 16 36 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.57 7.68 -51.93 -0.40 0.17 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.15 1.28 7.56 -52.49 -0.40 0.89 16 42 H 0.15 1.91 7.65 -52.49 -0.40 1.51 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -33.76 367.10 -10.62 -44.38 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.47 Total: 1.70 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.13 Total: -22.77 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.63 Total: -23.94 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.56 Total: -44.07 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 24.08 SS G_CDS: -0.59 Total: 23.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.76 -10.62 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.487 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds