Wall clock time and date at job start Tue Mar 31 2020 21:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46698 * 2 1 4 4 H 1.08995 * 109.47170 * 304.99854 * 3 2 1 5 5 C 1.50709 * 109.46657 * 185.00010 * 3 2 1 6 6 H 1.08000 * 119.99326 * 239.99617 * 5 3 2 7 7 C 1.37878 * 120.00103 * 60.00140 * 5 3 2 8 8 N 1.31518 * 119.99545 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99982 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47288 * 119.99802 * 9 7 5 12 12 H 1.48501 * 109.46911 * 239.99748 * 9 7 5 13 13 O 1.45198 * 109.47279 * 65.00278 * 3 2 1 14 14 C 1.34718 * 116.99774 * 269.99858 * 13 3 2 15 15 O 1.21471 * 119.99941 * 0.27067 * 14 13 3 16 16 C 1.47726 * 119.99738 * 180.02562 * 14 13 3 17 17 C 1.39620 * 120.15154 * 359.72570 * 16 14 13 18 18 C 1.37945 * 119.84967 * 179.70016 * 17 16 14 19 19 C 1.38373 * 120.14310 * 0.57698 * 18 17 16 20 20 S 1.76209 * 119.84565 * 179.69989 * 19 18 17 21 21 O 1.42101 * 104.27772 * 26.09031 * 20 19 18 22 22 O 1.42095 * 104.27516 * 153.94559 * 20 19 18 23 23 C 1.81400 * 104.44818 * 270.01820 * 20 19 18 24 24 C 1.52998 * 117.49523 * 253.62446 * 23 20 19 25 25 C 1.52992 * 117.50015 * 185.00090 * 23 20 19 26 26 C 1.38365 * 120.30783 * 359.71440 * 19 18 17 27 27 C 1.37946 * 120.14520 * 359.97438 * 26 19 18 28 28 H 1.09002 * 109.47660 * 59.99833 * 1 2 3 29 29 H 1.08996 * 109.47389 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47254 * 299.99937 * 1 2 3 31 31 H 1.08995 * 109.47263 * 240.00060 * 2 1 3 32 32 H 1.08997 * 109.47098 * 119.99715 * 2 1 3 33 33 H 0.96999 * 119.99223 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.07951 * 359.97429 * 17 16 14 35 35 H 1.08002 * 119.93193 * 180.28974 * 18 17 16 36 36 H 1.09003 * 115.55029 * 39.32898 * 23 20 19 37 37 H 1.08998 * 117.50263 * 359.97438 * 24 23 20 38 38 H 1.09007 * 117.49867 * 145.02383 * 24 23 20 39 39 H 1.08995 * 117.50200 * 214.97932 * 25 23 20 40 40 H 1.09006 * 117.50097 * 359.97438 * 25 23 20 41 41 H 1.07993 * 119.92704 * 180.02562 * 26 19 18 42 42 H 1.08002 * 120.07267 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8801 -1.3811 10 1 6.5987 1.5453 -0.1936 11 1 6.4961 -0.5189 -1.4626 12 1 6.3999 1.6157 -2.6092 13 8 1.6558 2.0917 1.2407 14 6 0.4683 2.7277 1.2560 15 8 -0.2294 2.7355 0.2617 16 6 0.0122 3.4111 2.4837 17 6 0.8068 3.3950 3.6317 18 6 0.3777 4.0404 4.7728 19 6 -0.8426 4.6926 4.7850 20 16 -1.3866 5.5078 6.2494 21 8 -0.1857 5.8360 6.9346 22 8 -2.2632 6.5231 5.7802 23 6 -2.3110 4.2383 7.1574 24 6 -3.8361 4.3574 7.1824 25 6 -3.0238 4.6664 8.4416 26 6 -1.6378 4.7075 3.6528 27 6 -1.2178 4.0715 2.5030 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0611 -2.9498 34 1 1.7572 2.8821 3.6250 35 1 0.9934 4.0327 5.6601 36 1 -1.8845 3.2356 7.1288 37 1 -4.2840 5.1988 6.6537 38 1 -4.4134 3.4328 7.1702 39 1 -3.0667 3.9453 9.2578 40 1 -2.9370 5.7108 8.7413 41 1 -2.5889 5.2187 3.6690 42 1 -1.8396 4.0834 1.6200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835338868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:54 Heat of formation + Delta-G solvation = -125.387077 kcal Electronic energy + Delta-G solvation = -26548.485798 eV Core-core repulsion = 22586.191757 eV Total energy + Delta-G solvation = -3962.294041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67935 -39.96620 -38.39218 -37.77676 -37.69369 -37.08505 -35.58197 -33.51787 -32.72718 -32.27751 -29.39079 -26.36970 -25.09251 -24.39271 -23.95982 -23.45515 -22.60804 -21.49808 -20.03867 -19.48025 -18.92542 -18.62264 -17.93103 -17.53896 -17.22677 -16.92805 -16.56704 -16.12240 -15.84792 -15.69730 -15.09636 -14.83452 -14.69661 -14.59985 -14.43655 -14.16953 -13.81219 -13.43508 -13.34853 -13.30012 -13.17490 -13.14874 -12.86793 -12.60371 -12.51877 -12.41943 -12.26210 -12.16115 -12.07974 -11.98433 -11.80595 -11.59981 -11.45012 -11.37870 -10.87803 -10.63762 -10.55290 -10.25065 -8.30957 -6.47703 -1.08207 -0.78070 0.11465 1.28643 1.40412 1.40592 1.53964 1.70108 1.83438 2.27680 2.37401 2.40323 2.85604 2.99085 3.15543 3.47965 3.58251 3.71258 3.75031 3.85243 3.98852 4.10280 4.23937 4.33158 4.35165 4.42638 4.48390 4.65761 4.74844 4.75216 4.77420 4.83895 4.85860 4.94944 5.03039 5.09877 5.12798 5.16126 5.31011 5.47279 5.54986 5.61983 5.88671 6.03947 6.54882 6.83151 7.23090 8.76136 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002469 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.066121 B =11337.168008 C =11887.793046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.270 1.270 12 H -0.277 1.277 13 O -0.353 6.353 14 C 0.486 3.514 15 O -0.530 6.530 16 C -0.083 4.083 17 C -0.089 4.089 18 C -0.036 4.036 19 C -0.633 4.633 20 S 2.538 3.462 21 O -0.962 6.962 22 O -0.955 6.955 23 C -0.659 4.659 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.030 4.030 27 C -0.085 4.085 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.271 0.729 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.177 0.823 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 5.823 21.792 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.026 0.974 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.195 1.195 12 H -0.202 1.202 13 O -0.269 6.269 14 C 0.332 3.668 15 O -0.422 6.422 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.055 4.055 19 C -0.718 4.718 20 S 2.719 3.281 21 O -0.960 6.960 22 O -0.953 6.953 23 C -0.772 4.772 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.048 4.048 27 C -0.104 4.104 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.190 0.810 36 H 0.201 0.799 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.194 0.806 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.417 6.559 21.476 26.685 hybrid contribution 1.119 -1.053 -1.465 2.123 sum -13.298 5.506 20.011 24.649 Atomic orbital electron populations 1.21723 0.96279 1.00747 1.00043 1.21873 0.94466 0.97830 1.02558 1.20485 0.94734 0.89410 0.78214 0.97367 1.21331 0.90301 1.40041 1.07002 0.91570 1.25787 1.04213 0.93839 0.94336 1.70013 1.37377 1.37853 1.09862 0.85164 0.77703 0.78373 0.78355 1.18843 1.19540 1.20246 1.86516 1.34848 1.62715 1.42861 1.21704 0.80216 0.76485 0.88428 1.90766 1.55745 1.59209 1.36491 1.19703 0.97157 0.99761 0.91813 1.21773 0.99970 0.97518 0.91527 1.21212 0.93729 0.91438 0.99087 1.31028 1.04861 1.16028 1.19870 1.04094 0.74419 0.75636 0.73906 1.93547 1.45865 1.82566 1.73977 1.93538 1.67768 1.53890 1.80086 1.31880 1.09461 1.19098 1.16732 1.23193 0.86605 1.06519 0.99929 1.23168 0.98130 1.04550 0.90765 1.21153 0.99753 0.93878 0.90006 1.21545 0.94000 0.94866 1.00023 0.94447 0.91791 0.94639 0.89348 0.93352 0.91958 0.83228 0.81038 0.79940 0.86001 0.84717 0.84346 0.86811 0.80570 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.56 71.98 0.62 -5.05 16 2 C -0.13 -6.44 5.49 30.60 0.17 -6.27 16 3 C 0.22 12.18 2.25 29.85 0.07 12.24 16 4 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 5 C -0.55 -30.97 8.90 25.60 0.23 -30.74 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.00 5.29 84.65 0.45 1.44 16 8 N -0.91 -51.84 11.29 21.45 0.24 -51.59 16 9 Si 0.98 42.71 29.54 68.60 2.03 44.74 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 O -0.35 -16.93 9.06 -56.28 -0.51 -17.44 16 14 C 0.49 20.85 6.36 70.33 0.45 21.29 16 15 O -0.53 -25.04 13.51 19.93 0.27 -24.77 16 16 C -0.08 -2.74 5.87 -20.10 -0.12 -2.86 16 17 C -0.09 -2.49 9.62 22.53 0.22 -2.27 16 18 C -0.04 -0.80 9.45 22.23 0.21 -0.59 16 19 C -0.63 -12.86 5.66 22.33 0.13 -12.73 16 20 S 2.54 42.78 5.52 -56.49 -0.31 42.46 16 21 O -0.96 -22.27 17.11 -127.65 -2.18 -24.46 16 22 O -0.96 -20.16 16.42 -127.65 -2.10 -22.26 16 23 C -0.66 -5.75 6.40 30.59 0.20 -5.55 16 24 C -0.12 -0.74 10.17 30.59 0.31 -0.43 16 25 C -0.13 -0.73 10.30 30.59 0.31 -0.42 16 26 C -0.03 -0.62 9.45 22.23 0.21 -0.41 16 27 C -0.09 -2.31 9.60 22.54 0.22 -2.10 16 28 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.47 6.05 -2.38 -0.01 1.46 16 31 H 0.09 4.81 5.95 -2.39 -0.01 4.79 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.15 4.17 7.61 -2.91 -0.02 4.15 16 35 H 0.17 2.89 7.56 -2.91 -0.02 2.87 16 36 H 0.18 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 0.75 7.68 -2.39 -0.02 0.73 16 38 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.18 2.62 7.56 -2.91 -0.02 2.60 16 42 H 0.15 3.89 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -75.48 367.10 2.13 -73.34 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.04 Total: 14.42 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 3.66 Total: -34.45 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.24 Total: -51.59 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -4.52 Total: -88.92 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 42.78 SS G_CDS: -0.31 Total: 42.46 kcal Total: -75.48 2.13 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.044 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds