Wall clock time and date at job start Tue Mar 31 2020 21:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 H 1.09004 * 109.47230 * 54.37870 * 3 2 1 5 5 C 1.50706 * 109.46970 * 174.37322 * 3 2 1 6 6 H 1.08007 * 119.99440 * 114.48384 * 5 3 2 7 7 C 1.37872 * 120.00339 * 294.49196 * 5 3 2 8 8 N 1.31512 * 119.99959 * 163.25566 * 7 5 3 9 9 Si 1.86805 * 119.99989 * 343.24892 * 7 5 3 10 10 H 1.48496 * 109.47258 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46908 * 300.00487 * 9 7 5 12 12 H 1.48493 * 109.46945 * 59.99985 * 9 7 5 13 13 O 1.45192 * 109.47594 * 294.37648 * 3 2 1 14 14 C 1.34715 * 116.99844 * 89.99977 * 13 3 2 15 15 O 1.21465 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.47732 * 120.00045 * 180.02562 * 14 13 3 17 17 C 1.39635 * 120.14592 * 359.72529 * 16 14 13 18 18 C 1.37940 * 119.84052 * 179.74578 * 17 16 14 19 19 C 1.38374 * 120.15558 * 0.52986 * 18 17 16 20 20 S 1.76196 * 119.84941 * 179.72214 * 19 18 17 21 21 O 1.42097 * 104.27738 * 26.09530 * 20 19 18 22 22 O 1.42104 * 104.27347 * 153.95365 * 20 19 18 23 23 C 1.81401 * 104.45061 * 270.02105 * 20 19 18 24 24 C 1.52998 * 117.49899 * 253.62549 * 23 20 19 25 25 C 1.52990 * 117.50011 * 185.00102 * 23 20 19 26 26 C 1.38367 * 120.29861 * 359.74551 * 19 18 17 27 27 C 1.37950 * 120.15175 * 359.97361 * 26 19 18 28 28 H 1.09006 * 109.47405 * 299.99786 * 1 2 3 29 29 H 1.08999 * 109.47863 * 59.99513 * 1 2 3 30 30 H 1.09006 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46943 * 240.00552 * 2 1 3 32 32 H 1.08993 * 109.47340 * 120.00038 * 2 1 3 33 33 H 0.96999 * 120.00124 * 354.55322 * 8 7 5 34 34 H 1.07996 * 120.07498 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.92228 * 180.27426 * 18 17 16 36 36 H 1.09004 * 115.54607 * 39.32887 * 23 20 19 37 37 H 1.09002 * 117.50185 * 359.97438 * 24 23 20 38 38 H 1.09002 * 117.49365 * 145.01706 * 24 23 20 39 39 H 1.09001 * 117.50078 * 214.98132 * 25 23 20 40 40 H 1.09000 * 117.50379 * 0.02562 * 25 23 20 41 41 H 1.08000 * 119.92318 * 179.97438 * 26 19 18 42 42 H 1.07995 * 120.07506 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5967 1.9846 0.8354 5 6 3.5405 1.4449 0.1393 6 1 4.1574 1.8053 -0.6706 7 6 4.1258 0.9867 1.3005 8 7 5.4037 0.6765 1.3147 9 14 3.1036 0.8067 2.8537 10 1 3.9615 0.3003 3.9550 11 1 2.5416 2.1281 3.2322 12 1 1.9953 -0.1507 2.6087 13 8 1.6686 2.0872 -1.2468 14 6 0.4813 2.7232 -1.2766 15 8 -0.2241 2.7390 -0.2879 16 6 0.0373 3.4012 -2.5117 17 6 0.8484 3.3898 -3.6483 18 6 0.4253 4.0205 -4.7998 19 6 -0.7948 4.6727 -4.8269 20 16 -1.3240 5.4819 -6.2999 21 8 -0.6542 4.7860 -7.3421 22 8 -2.7423 5.4794 -6.2108 23 6 -0.6796 7.1705 -6.1453 24 6 -1.6813 8.2827 -5.8284 25 6 -1.0716 8.1781 -7.2277 26 6 -1.6008 4.6928 -3.7025 27 6 -1.1926 4.0612 -2.5460 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9163 0.6942 0.4914 34 1 1.8030 2.8852 -3.6269 35 1 1.0496 4.0086 -5.6810 36 1 0.3191 7.2551 -5.7168 37 1 -2.7277 7.9999 -5.7133 38 1 -1.3418 9.0993 -5.1912 39 1 -0.3309 8.9260 -7.5112 40 1 -1.7170 7.8266 -8.0327 41 1 -2.5517 5.2041 -3.7303 42 1 -1.8225 4.0780 -1.6689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835338870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:59 Heat of formation + Delta-G solvation = -103.626109 kcal Electronic energy + Delta-G solvation = -26618.357848 eV Core-core repulsion = 22657.007433 eV Total energy + Delta-G solvation = -3961.350415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31546 -38.83845 -37.75982 -37.23507 -36.29303 -36.11127 -33.71648 -32.13104 -31.63413 -31.32730 -27.68734 -25.10268 -23.89745 -23.17950 -23.04454 -22.52863 -21.33413 -19.86256 -19.27728 -18.49368 -18.04956 -17.41481 -17.08641 -16.36494 -16.14407 -15.79249 -15.52635 -14.93836 -14.82993 -14.19357 -14.02155 -13.80772 -13.54379 -13.34109 -13.26918 -12.72944 -12.60718 -12.52526 -12.40857 -12.34271 -12.20825 -11.85058 -11.68924 -11.67410 -11.49669 -11.40588 -11.25446 -10.96928 -10.86819 -10.61084 -10.19333 -10.04946 -9.71874 -9.65318 -9.60523 -9.31611 -8.90584 -8.51122 -6.70674 -4.33115 -0.34307 0.20321 1.05582 2.35517 2.51914 2.78435 3.20413 3.28063 3.34659 3.37425 3.50233 3.61940 3.78061 4.00366 4.20927 4.29567 4.31883 4.53917 4.62208 4.91087 4.97546 5.00877 5.05092 5.05666 5.19005 5.25072 5.36385 5.37566 5.64280 5.78569 5.81665 5.83164 5.90066 5.99978 6.12853 6.35117 6.49394 6.56425 6.69410 6.71808 7.06557 7.23458 7.69160 8.14597 8.29095 8.73203 9.33931 10.70709 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002512 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.500522 B =11142.019329 C =11409.946833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.201 3.799 4 H 0.041 0.959 5 C -0.609 4.609 6 H 0.070 0.930 7 C 0.044 3.956 8 N -0.890 5.890 9 Si 1.030 2.970 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.268 1.268 13 O -0.335 6.335 14 C 0.489 3.511 15 O -0.504 6.504 16 C -0.057 4.057 17 C -0.084 4.084 18 C -0.038 4.038 19 C -0.638 4.638 20 S 2.528 3.472 21 O -0.930 6.930 22 O -0.933 6.933 23 C -0.667 4.667 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.035 4.035 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.273 0.727 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 13.973 -15.055 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.646 4.646 6 H 0.088 0.912 7 C -0.163 4.163 8 N -0.523 5.523 9 Si 0.857 3.143 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.195 1.195 13 O -0.250 6.250 14 C 0.332 3.668 15 O -0.395 6.395 16 C -0.058 4.058 17 C -0.103 4.103 18 C -0.056 4.056 19 C -0.725 4.725 20 S 2.708 3.292 21 O -0.928 6.928 22 O -0.930 6.930 23 C -0.776 4.776 24 C -0.163 4.163 25 C -0.165 4.165 26 C -0.053 4.053 27 C -0.102 4.102 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.166 0.834 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.582 13.180 -13.778 24.003 hybrid contribution 0.659 0.443 -0.693 1.054 sum -13.922 13.623 -14.471 24.266 Atomic orbital electron populations 1.21915 0.97372 1.00029 1.01426 1.22454 0.93867 0.99255 1.03102 1.21027 0.96656 0.88210 0.79315 0.94154 1.21919 0.88507 1.48899 1.05270 0.91214 1.25639 0.97096 0.92456 1.01126 1.70844 1.08000 1.41809 1.31624 0.84274 0.75752 0.77895 0.76386 1.20366 1.20417 1.19452 1.86595 1.33216 1.62142 1.43065 1.21036 0.81278 0.77160 0.87279 1.90783 1.54846 1.58242 1.35614 1.19816 0.95397 0.97659 0.92927 1.21746 1.00223 0.96968 0.91344 1.20962 0.93315 0.92934 0.98426 1.30630 1.05460 1.16751 1.19694 1.04389 0.74750 0.75852 0.74257 1.93585 1.76286 1.69613 1.53278 1.93570 1.26839 1.86344 1.86259 1.32187 1.12764 1.16143 1.16483 1.22939 0.97524 0.96981 0.98872 1.22838 1.03036 0.98620 0.92047 1.20849 0.98172 0.95719 0.90602 1.21430 0.94837 0.95020 0.98900 0.92607 0.94065 0.93871 0.91893 0.90139 0.91695 0.82971 0.83377 0.81814 0.86091 0.86659 0.86458 0.87322 0.83383 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.57 37.16 0.32 -2.61 16 2 C -0.15 -3.32 5.32 -26.73 -0.14 -3.46 16 3 C 0.20 4.94 1.83 -27.88 -0.05 4.89 16 4 H 0.04 1.03 5.83 -51.93 -0.30 0.73 16 5 C -0.61 -16.93 9.17 -34.44 -0.32 -17.25 16 6 H 0.07 2.08 8.06 -52.48 -0.42 1.65 16 7 C 0.04 1.22 5.31 -17.82 -0.09 1.13 16 8 N -0.89 -26.33 13.69 55.43 0.76 -25.57 16 9 Si 1.03 24.39 26.28 -169.99 -4.47 19.92 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.27 -5.85 5.69 56.52 0.32 -5.53 16 13 O -0.33 -7.48 9.07 -40.53 -0.37 -7.84 16 14 C 0.49 9.62 6.38 34.61 0.22 9.84 16 15 O -0.50 -10.64 13.53 -19.24 -0.26 -10.90 16 16 C -0.06 -0.89 5.87 -104.98 -0.62 -1.50 16 17 C -0.08 -1.16 9.62 -39.17 -0.38 -1.53 16 18 C -0.04 -0.43 9.45 -39.64 -0.37 -0.81 16 19 C -0.64 -6.88 5.66 -39.48 -0.22 -7.11 16 20 S 2.53 23.42 5.52 -107.50 -0.59 22.83 16 21 O -0.93 -11.32 17.11 -57.54 -0.98 -12.31 16 22 O -0.93 -10.44 16.42 -57.54 -0.94 -11.38 16 23 C -0.67 -4.02 6.40 -26.74 -0.17 -4.20 16 24 C -0.13 -0.60 10.17 -26.73 -0.27 -0.87 16 25 C -0.13 -0.60 10.29 -26.74 -0.28 -0.87 16 26 C -0.03 -0.38 9.45 -39.64 -0.37 -0.75 16 27 C -0.08 -1.08 9.60 -39.17 -0.38 -1.46 16 28 H 0.05 1.10 7.83 -51.93 -0.41 0.70 16 29 H 0.04 0.79 6.05 -51.93 -0.31 0.48 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.83 4.77 -51.93 -0.25 1.58 16 33 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 34 H 0.15 2.07 7.61 -52.49 -0.40 1.67 16 35 H 0.15 1.38 7.56 -52.49 -0.40 0.98 16 36 H 0.16 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.15 1.22 7.56 -52.49 -0.40 0.82 16 42 H 0.15 1.80 7.65 -52.49 -0.40 1.39 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -34.73 362.77 -9.97 -44.70 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.46 Total: 1.65 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.12 Total: -26.56 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.76 Total: -25.57 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.56 Total: -42.43 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -4.47 Total: 19.92 kcal Atomic # 16 Polarization: 23.42 SS G_CDS: -0.59 Total: 22.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.73 -9.97 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.927 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds