Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 H 1.09004 * 109.47230 * 54.37870 * 3 2 1 5 5 C 1.50706 * 109.46970 * 174.37322 * 3 2 1 6 6 H 1.08007 * 119.99440 * 114.48384 * 5 3 2 7 7 C 1.37872 * 120.00339 * 294.49196 * 5 3 2 8 8 N 1.31512 * 119.99959 * 163.25566 * 7 5 3 9 9 Si 1.86805 * 119.99989 * 343.24892 * 7 5 3 10 10 H 1.48496 * 109.47258 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46908 * 300.00487 * 9 7 5 12 12 H 1.48493 * 109.46945 * 59.99985 * 9 7 5 13 13 O 1.45192 * 109.47594 * 294.37648 * 3 2 1 14 14 C 1.34715 * 116.99844 * 89.99977 * 13 3 2 15 15 O 1.21465 * 119.99963 * 0.02562 * 14 13 3 16 16 C 1.47732 * 120.00045 * 180.02562 * 14 13 3 17 17 C 1.39635 * 120.14592 * 359.72529 * 16 14 13 18 18 C 1.37940 * 119.84052 * 179.74578 * 17 16 14 19 19 C 1.38374 * 120.15558 * 0.52986 * 18 17 16 20 20 S 1.76196 * 119.84941 * 179.72214 * 19 18 17 21 21 O 1.42097 * 104.27738 * 26.09530 * 20 19 18 22 22 O 1.42104 * 104.27347 * 153.95365 * 20 19 18 23 23 C 1.81401 * 104.45061 * 270.02105 * 20 19 18 24 24 C 1.52998 * 117.49899 * 253.62549 * 23 20 19 25 25 C 1.52990 * 117.50011 * 185.00102 * 23 20 19 26 26 C 1.38367 * 120.29861 * 359.74551 * 19 18 17 27 27 C 1.37950 * 120.15175 * 359.97361 * 26 19 18 28 28 H 1.09006 * 109.47405 * 299.99786 * 1 2 3 29 29 H 1.08999 * 109.47863 * 59.99513 * 1 2 3 30 30 H 1.09006 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46943 * 240.00552 * 2 1 3 32 32 H 1.08993 * 109.47340 * 120.00038 * 2 1 3 33 33 H 0.96999 * 120.00124 * 354.55322 * 8 7 5 34 34 H 1.07996 * 120.07498 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.92228 * 180.27426 * 18 17 16 36 36 H 1.09004 * 115.54607 * 39.32887 * 23 20 19 37 37 H 1.09002 * 117.50185 * 359.97438 * 24 23 20 38 38 H 1.09002 * 117.49365 * 145.01706 * 24 23 20 39 39 H 1.09001 * 117.50078 * 214.98132 * 25 23 20 40 40 H 1.09000 * 117.50379 * 0.02562 * 25 23 20 41 41 H 1.08000 * 119.92318 * 179.97438 * 26 19 18 42 42 H 1.07995 * 120.07506 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5967 1.9846 0.8354 5 6 3.5405 1.4449 0.1393 6 1 4.1574 1.8053 -0.6706 7 6 4.1258 0.9867 1.3005 8 7 5.4037 0.6765 1.3147 9 14 3.1036 0.8067 2.8537 10 1 3.9615 0.3003 3.9550 11 1 2.5416 2.1281 3.2322 12 1 1.9953 -0.1507 2.6087 13 8 1.6686 2.0872 -1.2468 14 6 0.4813 2.7232 -1.2766 15 8 -0.2241 2.7390 -0.2879 16 6 0.0373 3.4012 -2.5117 17 6 0.8484 3.3898 -3.6483 18 6 0.4253 4.0205 -4.7998 19 6 -0.7948 4.6727 -4.8269 20 16 -1.3240 5.4819 -6.2999 21 8 -0.6542 4.7860 -7.3421 22 8 -2.7423 5.4794 -6.2108 23 6 -0.6796 7.1705 -6.1453 24 6 -1.6813 8.2827 -5.8284 25 6 -1.0716 8.1781 -7.2277 26 6 -1.6008 4.6928 -3.7025 27 6 -1.1926 4.0612 -2.5460 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9163 0.6942 0.4914 34 1 1.8030 2.8852 -3.6269 35 1 1.0496 4.0086 -5.6810 36 1 0.3191 7.2551 -5.7168 37 1 -2.7277 7.9999 -5.7133 38 1 -1.3418 9.0993 -5.1912 39 1 -0.3309 8.9260 -7.5112 40 1 -1.7170 7.8266 -8.0327 41 1 -2.5517 5.2041 -3.7303 42 1 -1.8225 4.0780 -1.6689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835338870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = -126.033083 kcal Electronic energy + Delta-G solvation = -26619.329487 eV Core-core repulsion = 22657.007433 eV Total energy + Delta-G solvation = -3962.322054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79036 -40.03997 -38.41361 -37.81775 -37.79237 -37.10752 -35.63822 -33.99233 -32.82326 -32.31642 -29.58212 -26.32790 -24.62341 -24.33596 -23.99805 -23.47658 -22.79296 -21.56068 -20.08175 -20.06028 -19.26347 -18.86689 -18.04506 -17.65281 -17.40132 -16.97036 -16.25070 -16.03229 -15.80588 -15.71915 -15.12088 -14.93787 -14.76889 -14.73860 -14.53638 -14.47213 -14.21201 -13.86759 -13.53909 -13.32096 -13.18202 -13.09779 -12.75468 -12.53615 -12.48888 -12.43802 -12.29165 -12.10500 -12.02272 -11.96801 -11.74762 -11.57863 -11.46596 -11.37379 -10.90815 -10.67244 -10.65258 -10.28900 -8.96410 -6.59435 -1.11616 -0.81927 0.07667 1.21035 1.38641 1.43694 1.61576 1.67460 1.75350 2.24773 2.34469 2.35953 2.82730 2.84989 3.13071 3.43815 3.51734 3.64743 3.70970 3.81399 3.96501 4.06339 4.10753 4.16977 4.19636 4.27911 4.38757 4.52412 4.63875 4.73085 4.74056 4.78188 4.80354 4.93014 4.94082 4.99894 5.01081 5.08137 5.09002 5.33116 5.36676 5.51025 5.74288 5.88625 6.32383 6.71748 7.16524 8.44722 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.002512 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.500522 B =11142.019329 C =11409.946833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.033 0.967 5 C -0.618 4.618 6 H 0.033 0.967 7 C 0.002 3.998 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.274 1.274 11 H -0.269 1.269 12 H -0.236 1.236 13 O -0.350 6.350 14 C 0.488 3.512 15 O -0.522 6.522 16 C -0.085 4.085 17 C -0.092 4.092 18 C -0.038 4.038 19 C -0.632 4.632 20 S 2.539 3.461 21 O -0.963 6.963 22 O -0.953 6.953 23 C -0.661 4.661 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.029 4.029 27 C -0.081 4.081 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.260 0.740 34 H 0.144 0.856 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.179 0.821 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 15.598 -15.724 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.148 3.852 4 H 0.051 0.949 5 C -0.656 4.656 6 H 0.051 0.949 7 C -0.199 4.199 8 N -0.550 5.550 9 Si 0.885 3.115 10 H -0.199 1.199 11 H -0.194 1.194 12 H -0.161 1.161 13 O -0.266 6.266 14 C 0.333 3.667 15 O -0.414 6.414 16 C -0.086 4.086 17 C -0.111 4.111 18 C -0.056 4.056 19 C -0.717 4.717 20 S 2.720 3.280 21 O -0.960 6.960 22 O -0.950 6.950 23 C -0.774 4.774 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.047 4.047 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.198 0.802 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.133 0.867 41 H 0.197 0.803 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.049 14.757 -14.465 26.790 hybrid contribution 1.407 0.127 -0.691 1.572 sum -15.643 14.884 -15.156 26.381 Atomic orbital electron populations 1.21825 0.94885 1.01926 1.01202 1.22344 0.96026 0.97234 1.02797 1.20771 0.94403 0.89845 0.80146 0.94893 1.22046 0.90527 1.48586 1.04409 0.94892 1.26971 0.97289 0.91491 1.04153 1.70948 1.09063 1.44002 1.31016 0.83861 0.75513 0.79199 0.72963 1.19893 1.19419 1.16059 1.86567 1.35196 1.62929 1.41880 1.21683 0.79996 0.76417 0.88578 1.90750 1.54971 1.58983 1.36650 1.19687 0.97245 0.99939 0.91719 1.21740 0.99943 0.97582 0.91825 1.21179 0.94003 0.92267 0.98179 1.31037 1.04670 1.15651 1.20335 1.04068 0.74007 0.76936 0.72942 1.93547 1.76650 1.71764 1.54063 1.93541 1.28118 1.87257 1.86123 1.31889 1.13826 1.12884 1.18772 1.23195 0.97359 0.96344 0.99221 1.23166 1.03413 0.97872 0.92197 1.21199 0.99122 0.94831 0.89578 1.21574 0.93796 0.94554 1.00070 0.92794 0.94337 0.90861 0.92227 0.90429 0.93035 0.83831 0.81358 0.80165 0.85826 0.84801 0.84471 0.86717 0.80343 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.57 71.98 0.62 -4.65 16 2 C -0.15 -6.45 5.32 30.59 0.16 -6.28 16 3 C 0.20 10.10 1.83 29.85 0.05 10.15 16 4 H 0.03 1.70 5.83 -2.39 -0.01 1.69 16 5 C -0.62 -35.72 9.17 25.60 0.23 -35.49 16 6 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 7 C 0.00 0.11 5.31 84.65 0.45 0.56 16 8 N -0.92 -55.86 13.69 21.45 0.29 -55.56 16 9 Si 1.06 48.80 26.28 68.60 1.80 50.60 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.24 -9.58 5.69 99.48 0.57 -9.02 16 13 O -0.35 -16.12 9.07 -56.25 -0.51 -16.63 16 14 C 0.49 19.48 6.38 70.33 0.45 19.93 16 15 O -0.52 -22.03 13.53 19.95 0.27 -21.76 16 16 C -0.08 -2.65 5.87 -20.10 -0.12 -2.77 16 17 C -0.09 -2.55 9.62 22.54 0.22 -2.34 16 18 C -0.04 -0.83 9.45 22.23 0.21 -0.62 16 19 C -0.63 -12.44 5.66 22.33 0.13 -12.31 16 20 S 2.54 41.72 5.52 -56.49 -0.31 41.41 16 21 O -0.96 -22.11 17.11 -127.65 -2.18 -24.29 16 22 O -0.95 -19.28 16.42 -127.65 -2.10 -21.37 16 23 C -0.66 -5.83 6.40 30.59 0.20 -5.63 16 24 C -0.12 -0.72 10.17 30.59 0.31 -0.41 16 25 C -0.13 -0.75 10.29 30.59 0.31 -0.43 16 26 C -0.03 -0.57 9.45 22.23 0.21 -0.36 16 27 C -0.08 -2.02 9.60 22.54 0.22 -1.81 16 28 H 0.05 2.03 7.83 -2.38 -0.02 2.01 16 29 H 0.04 1.44 6.05 -2.39 -0.01 1.42 16 30 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 3.43 4.77 -2.39 -0.01 3.42 16 33 H 0.26 16.01 8.73 -92.71 -0.81 15.20 16 34 H 0.14 4.13 7.61 -2.91 -0.02 4.11 16 35 H 0.17 2.94 7.56 -2.91 -0.02 2.91 16 36 H 0.18 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.12 0.70 7.68 -2.39 -0.02 0.68 16 38 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.18 2.37 7.56 -2.91 -0.02 2.34 16 42 H 0.16 3.57 7.65 -2.91 -0.02 3.55 16 Total: -1.00 -77.22 362.77 1.78 -75.44 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.87 Total: 14.63 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.65 Total: -42.46 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.29 Total: -55.56 kcal Atomic # 8 Polarization: -79.54 SS G_CDS: -4.52 Total: -84.06 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.80 Total: 50.60 kcal Atomic # 16 Polarization: 41.72 SS G_CDS: -0.31 Total: 41.41 kcal Total: -77.22 1.78 -75.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835338870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.591 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds