Wall clock time and date at job start Tue Mar 31 2020 21:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34716 * 116.99823 * 2 1 4 4 O 1.21467 * 120.00455 * 0.02562 * 3 2 1 5 5 C 1.47730 * 119.99526 * 179.97438 * 3 2 1 6 6 C 1.39631 * 120.14786 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84816 * 180.02562 * 6 5 3 8 8 C 1.38365 * 120.15416 * 0.02979 * 7 6 5 9 9 C 1.50699 * 119.85152 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46817 * 89.99871 * 9 8 7 11 11 O 1.20818 * 120.00197 * 359.72380 * 10 9 8 12 12 O 1.34230 * 119.99763 * 179.97438 * 10 9 8 13 13 C 1.45198 * 117.00173 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47372 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47123 * 180.02562 * 14 13 12 16 16 S 1.81004 * 109.46958 * 180.02562 * 15 14 13 17 17 C 1.76204 * 99.99881 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99933 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00014 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47026 * 59.99198 * 21 19 17 23 23 H 1.48497 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46643 * 299.99830 * 21 19 17 25 25 C 1.38368 * 120.30094 * 0.22772 * 8 7 6 26 26 C 1.37954 * 120.14756 * 359.49268 * 25 8 7 27 27 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47544 * 300.00102 * 1 2 3 29 29 H 1.09002 * 109.47187 * 59.99965 * 1 2 3 30 30 H 1.08006 * 120.07306 * 0.02562 * 6 5 3 31 31 H 1.08005 * 119.92517 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47247 * 329.99934 * 9 8 7 33 33 H 1.09001 * 109.47358 * 209.99360 * 9 8 7 34 34 H 1.09003 * 109.46718 * 299.99877 * 13 12 10 35 35 H 1.08998 * 109.47176 * 60.00127 * 13 12 10 36 36 H 1.08997 * 109.46822 * 300.00275 * 14 13 12 37 37 H 1.08998 * 109.47020 * 59.99843 * 14 13 12 38 38 H 1.09006 * 109.47237 * 299.99515 * 15 14 13 39 39 H 1.08998 * 109.47405 * 59.99951 * 15 14 13 40 40 H 0.96997 * 120.00221 * 180.02562 * 20 19 17 41 41 H 1.07999 * 119.92746 * 179.72792 * 25 8 7 42 42 H 1.08002 * 120.07483 * 180.26048 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1759 2.5200 0.0000 7 6 5.5538 2.5849 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5014 -0.0006 10 6 8.3114 1.5280 1.4201 11 8 7.5275 1.4921 2.3387 12 8 9.6294 1.5966 1.6649 13 6 10.0411 1.6190 3.0571 14 6 11.5669 1.6989 3.1366 15 6 12.0006 1.7219 4.6036 16 16 13.8057 1.8172 4.6977 17 6 14.0207 1.8294 6.4465 18 1 13.1596 1.7847 7.0967 19 6 15.2967 1.8976 6.9883 20 7 16.3462 1.9525 6.1958 21 14 15.5248 1.9098 8.8423 22 1 14.9559 0.6653 9.4193 23 1 16.9728 1.9865 9.1625 24 1 14.8268 3.0868 9.4191 25 6 5.6795 0.1880 -0.0049 26 6 4.3023 0.1086 0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.5912 3.4281 -0.0004 31 1 6.0480 3.5453 0.0000 32 1 8.1254 2.4091 -0.5147 33 1 8.2186 0.6316 -0.5144 34 1 9.6059 2.4880 3.5506 35 1 9.6982 0.7104 3.5520 36 1 12.0024 0.8302 2.6429 37 1 11.9094 2.6077 2.6418 38 1 11.5651 2.5905 5.0977 39 1 11.6581 0.8129 5.0981 40 1 17.2380 1.9998 6.5744 41 1 6.2712 -0.7154 -0.0094 42 1 3.8157 -0.8556 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837877032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:12 Heat of formation + Delta-G solvation = -162.844613 kcal Electronic energy + Delta-G solvation = -24412.255373 eV Core-core repulsion = 20448.337051 eV Total energy + Delta-G solvation = -3963.918322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07821 -40.62451 -39.25923 -36.93385 -36.72496 -33.76742 -33.39463 -32.46070 -31.52097 -29.56353 -27.87054 -26.47098 -25.46213 -23.82888 -23.19217 -21.61718 -21.33754 -20.72344 -18.51356 -17.90236 -17.57864 -17.39780 -16.83812 -16.79291 -16.61946 -15.69392 -15.59597 -15.11298 -14.83435 -14.67709 -14.36776 -14.02566 -13.93314 -13.79574 -13.44039 -13.13706 -12.87983 -12.67050 -12.59595 -12.36599 -12.26877 -12.05666 -11.52204 -11.37616 -11.27222 -11.16298 -11.00704 -10.98698 -10.95932 -10.73304 -10.62403 -10.33036 -9.67433 -9.45391 -9.36726 -9.08588 -8.38597 -6.58666 -6.26350 -3.97778 0.16526 0.92019 2.00336 2.04165 2.21504 2.56154 3.19862 3.21832 3.26329 3.34706 3.53879 4.00860 4.18485 4.23500 4.33608 4.48073 4.64587 4.65495 4.69644 4.72766 4.84807 5.03080 5.04324 5.06823 5.10164 5.11410 5.14701 5.29798 5.37082 5.45229 5.52002 5.68432 5.74023 5.79972 5.86255 5.94407 5.99600 6.12630 6.33308 6.40743 6.41587 6.63969 7.27458 7.57132 7.61290 8.32899 9.19973 10.81744 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.001430 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.064332 B =19573.510213 C =20064.909911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.506 6.506 5 C -0.128 4.128 6 C -0.051 4.051 7 C -0.114 4.114 8 C -0.037 4.037 9 C -0.081 4.081 10 C 0.460 3.540 11 O -0.502 6.502 12 O -0.355 6.355 13 C 0.073 3.927 14 C -0.098 4.098 15 C -0.115 4.115 16 S -0.123 6.123 17 C -0.520 4.520 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.870 5.870 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.116 4.116 26 C -0.059 4.059 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.954 -3.777 -17.795 32.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.395 6.395 5 C -0.129 4.129 6 C -0.070 4.070 7 C -0.132 4.132 8 C -0.038 4.038 9 C -0.119 4.119 10 C 0.302 3.698 11 O -0.389 6.389 12 O -0.271 6.271 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.264 4.264 16 S 0.105 5.895 17 C -0.668 4.668 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.134 4.134 26 C -0.077 4.077 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.405 -3.448 -18.309 32.316 hybrid contribution -0.984 0.011 2.395 2.590 sum -27.389 -3.437 -15.914 31.863 Atomic orbital electron populations 1.23310 0.75722 1.03936 1.02750 1.86541 1.23765 1.32580 1.84273 1.21246 0.89172 0.81479 0.72597 1.90839 1.66818 1.36034 1.45813 1.19100 0.88875 0.95192 1.09724 1.21224 0.94429 0.96790 0.94521 1.21001 0.93251 0.98409 1.00506 1.19625 0.93816 0.93815 0.96495 1.20401 0.91965 1.07464 0.92037 1.23356 0.81130 0.73143 0.92130 1.90712 1.56780 1.44715 1.46695 1.86470 1.25025 1.83293 1.32358 1.23291 0.96601 1.02626 0.77659 1.21287 0.90960 1.04298 0.97075 1.23185 1.03425 1.03346 0.96409 1.84642 0.96523 1.96615 1.11709 1.22658 0.95294 1.58703 0.90154 0.90891 1.25006 0.94914 0.94468 0.99263 1.70003 0.98438 1.46873 1.35171 0.86211 0.77311 0.78892 0.83055 1.19904 1.20765 1.19900 1.21047 0.94434 0.97439 1.00472 1.21421 0.93647 0.98002 0.94651 0.87807 0.91699 0.91730 0.84278 0.84712 0.86130 0.86131 0.91122 0.91117 0.90323 0.90318 0.91740 0.91735 0.92173 0.84815 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.94 9.82 -40.53 -0.40 -3.34 16 3 C 0.51 5.10 7.90 34.61 0.27 5.37 16 4 O -0.51 -6.19 16.14 -19.24 -0.31 -6.50 16 5 C -0.13 -1.17 5.87 -104.98 -0.62 -1.78 16 6 C -0.05 -0.45 9.60 -39.17 -0.38 -0.82 16 7 C -0.11 -0.90 9.68 -39.64 -0.38 -1.28 16 8 C -0.04 -0.29 4.38 -104.53 -0.46 -0.75 16 9 C -0.08 -0.55 5.94 -29.03 -0.17 -0.72 16 10 C 0.46 5.17 7.95 36.01 0.29 5.46 16 11 O -0.50 -7.26 15.78 -18.74 -0.30 -7.56 16 12 O -0.35 -4.42 10.22 -39.26 -0.40 -4.83 16 13 C 0.07 1.01 5.47 37.16 0.20 1.21 16 14 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 15 C -0.12 -2.25 5.67 37.16 0.21 -2.04 16 16 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 17 C -0.52 -14.74 9.50 30.94 0.29 -14.45 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.12 -0.86 9.68 -39.64 -0.38 -1.24 16 26 C -0.06 -0.46 9.62 -39.17 -0.38 -0.83 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 1.12 7.65 -52.48 -0.40 0.72 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.12 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.12 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.25 8.14 -51.91 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.84 7.61 -52.49 -0.40 0.44 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -35.03 387.30 -8.67 -43.70 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.83 Total: -2.88 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.68 Total: -10.36 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.73 Total: -24.93 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.41 Total: -22.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.03 -8.67 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837877032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.144 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds