Wall clock time and date at job start Tue Mar 31 2020 21:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34716 * 116.99823 * 2 1 4 4 O 1.21467 * 120.00455 * 0.02562 * 3 2 1 5 5 C 1.47730 * 119.99526 * 179.97438 * 3 2 1 6 6 C 1.39631 * 120.14786 * 179.97438 * 5 3 2 7 7 C 1.37938 * 119.84816 * 180.02562 * 6 5 3 8 8 C 1.38365 * 120.15416 * 0.02979 * 7 6 5 9 9 C 1.50699 * 119.85152 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46817 * 89.99871 * 9 8 7 11 11 O 1.20818 * 120.00197 * 359.72380 * 10 9 8 12 12 O 1.34230 * 119.99763 * 179.97438 * 10 9 8 13 13 C 1.45198 * 117.00173 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47372 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47123 * 180.02562 * 14 13 12 16 16 S 1.81004 * 109.46958 * 180.02562 * 15 14 13 17 17 C 1.76204 * 99.99881 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99933 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00014 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00063 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47026 * 59.99198 * 21 19 17 23 23 H 1.48497 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46643 * 299.99830 * 21 19 17 25 25 C 1.38368 * 120.30094 * 0.22772 * 8 7 6 26 26 C 1.37954 * 120.14756 * 359.49268 * 25 8 7 27 27 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47544 * 300.00102 * 1 2 3 29 29 H 1.09002 * 109.47187 * 59.99965 * 1 2 3 30 30 H 1.08006 * 120.07306 * 0.02562 * 6 5 3 31 31 H 1.08005 * 119.92517 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47247 * 329.99934 * 9 8 7 33 33 H 1.09001 * 109.47358 * 209.99360 * 9 8 7 34 34 H 1.09003 * 109.46718 * 299.99877 * 13 12 10 35 35 H 1.08998 * 109.47176 * 60.00127 * 13 12 10 36 36 H 1.08997 * 109.46822 * 300.00275 * 14 13 12 37 37 H 1.08998 * 109.47020 * 59.99843 * 14 13 12 38 38 H 1.09006 * 109.47237 * 299.99515 * 15 14 13 39 39 H 1.08998 * 109.47405 * 59.99951 * 15 14 13 40 40 H 0.96997 * 120.00221 * 180.02562 * 20 19 17 41 41 H 1.07999 * 119.92746 * 179.72792 * 25 8 7 42 42 H 1.08002 * 120.07483 * 180.26048 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1759 2.5200 0.0000 7 6 5.5538 2.5849 0.0000 8 6 6.3044 1.4226 0.0000 9 6 7.8093 1.5014 -0.0006 10 6 8.3114 1.5280 1.4201 11 8 7.5275 1.4921 2.3387 12 8 9.6294 1.5966 1.6649 13 6 10.0411 1.6190 3.0571 14 6 11.5669 1.6989 3.1366 15 6 12.0006 1.7219 4.6036 16 16 13.8057 1.8172 4.6977 17 6 14.0207 1.8294 6.4465 18 1 13.1596 1.7847 7.0967 19 6 15.2967 1.8976 6.9883 20 7 16.3462 1.9525 6.1958 21 14 15.5248 1.9098 8.8423 22 1 14.9559 0.6653 9.4193 23 1 16.9728 1.9865 9.1625 24 1 14.8268 3.0868 9.4191 25 6 5.6795 0.1880 -0.0049 26 6 4.3023 0.1086 0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.5912 3.4281 -0.0004 31 1 6.0480 3.5453 0.0000 32 1 8.1254 2.4091 -0.5147 33 1 8.2186 0.6316 -0.5144 34 1 9.6059 2.4880 3.5506 35 1 9.6982 0.7104 3.5520 36 1 12.0024 0.8302 2.6429 37 1 11.9094 2.6077 2.6418 38 1 11.5651 2.5905 5.0977 39 1 11.6581 0.8129 5.0981 40 1 17.2380 1.9998 6.5744 41 1 6.2712 -0.7154 -0.0094 42 1 3.8157 -0.8556 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837877032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:12 Heat of formation + Delta-G solvation = -181.447283 kcal Electronic energy + Delta-G solvation = -24413.062045 eV Core-core repulsion = 20448.337051 eV Total energy + Delta-G solvation = -3964.724994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80607 -41.48069 -39.91161 -37.82580 -37.54986 -34.91763 -34.58496 -34.21003 -32.09317 -30.21726 -28.52088 -27.95450 -27.23106 -24.56356 -23.76601 -22.77944 -22.28497 -21.43770 -19.57756 -19.15744 -18.69909 -18.26701 -17.80206 -17.53328 -17.44695 -16.89381 -16.42661 -16.35726 -15.97899 -15.78427 -15.63170 -14.96233 -14.60968 -14.54432 -14.38561 -14.19039 -14.12713 -13.81747 -13.41793 -13.17884 -13.12750 -13.00867 -12.92220 -12.77056 -12.62671 -12.38018 -12.35435 -12.06676 -11.88353 -11.73114 -11.72040 -11.48770 -11.42141 -11.13810 -10.36142 -10.03043 -9.99625 -8.67477 -8.37767 -6.14266 -0.48444 0.34531 1.19032 1.23266 1.32961 1.41179 1.46984 1.58303 1.62377 1.92104 2.27617 2.73163 2.96837 3.29402 3.42822 3.65853 3.77194 3.81973 3.86688 3.93497 4.00828 4.17569 4.20756 4.26043 4.29528 4.30991 4.33962 4.55353 4.57082 4.59829 4.66994 4.69380 4.77358 4.98680 5.03606 5.08048 5.15475 5.21811 5.30846 5.39795 5.42514 5.48819 5.79229 6.17640 6.57006 6.71707 7.04786 8.71266 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.001430 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.064332 B =19573.510213 C =20064.909911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.538 6.538 5 C -0.146 4.146 6 C -0.065 4.065 7 C -0.119 4.119 8 C -0.045 4.045 9 C -0.073 4.073 10 C 0.461 3.539 11 O -0.538 6.538 12 O -0.355 6.355 13 C 0.081 3.919 14 C -0.086 4.086 15 C -0.093 4.093 16 S -0.183 6.183 17 C -0.544 4.544 18 H 0.073 0.927 19 C 0.018 3.982 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.265 1.265 25 C -0.119 4.119 26 C -0.060 4.060 27 H 0.136 0.864 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.272 0.728 41 H 0.156 0.844 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.465 -4.588 -18.010 33.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.430 6.430 5 C -0.147 4.147 6 C -0.083 4.083 7 C -0.137 4.137 8 C -0.045 4.045 9 C -0.109 4.109 10 C 0.306 3.694 11 O -0.427 6.427 12 O -0.272 6.272 13 C 0.006 3.994 14 C -0.124 4.124 15 C -0.242 4.242 16 S 0.046 5.954 17 C -0.691 4.691 18 H 0.091 0.909 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.190 1.190 25 C -0.137 4.137 26 C -0.078 4.078 27 H 0.154 0.846 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.921 -4.276 -18.548 32.971 hybrid contribution -0.933 0.228 2.381 2.568 sum -27.854 -4.048 -16.167 32.459 Atomic orbital electron populations 1.23606 0.74191 1.06012 1.02642 1.86534 1.25326 1.31640 1.83757 1.21498 0.89632 0.81496 0.71765 1.90813 1.67544 1.37037 1.47595 1.19246 0.88601 0.96022 1.10830 1.21330 0.95065 0.96749 0.95135 1.21243 0.92934 0.99453 1.00036 1.19842 0.94540 0.93876 0.96227 1.20560 0.90967 1.10231 0.89159 1.24231 0.80072 0.71570 0.93564 1.90709 1.57291 1.46499 1.48219 1.86467 1.26158 1.83477 1.31079 1.22981 0.94846 1.02758 0.78821 1.21104 0.92577 1.04530 0.94225 1.23083 0.98261 1.03541 0.99318 1.84597 1.02782 1.96802 1.11238 1.23035 0.95811 1.58997 0.91285 0.90856 1.26023 0.94447 0.93670 1.04542 1.70131 0.98984 1.47631 1.37449 0.85096 0.77641 0.79307 0.76568 1.18994 1.19902 1.19029 1.21370 0.94448 0.98279 0.99600 1.21621 0.93977 0.98119 0.94069 0.84640 0.92068 0.91658 0.84592 0.83136 0.83421 0.83115 0.91126 0.90971 0.90077 0.90163 0.91508 0.91421 0.91883 0.82649 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.74 9.82 -56.25 -0.55 -6.29 16 3 C 0.51 10.35 7.90 70.33 0.56 10.90 16 4 O -0.54 -13.68 16.14 19.94 0.32 -13.36 16 5 C -0.15 -2.64 5.87 -20.10 -0.12 -2.75 16 6 C -0.06 -1.12 9.60 22.54 0.22 -0.90 16 7 C -0.12 -1.71 9.68 22.23 0.22 -1.50 16 8 C -0.04 -0.59 4.38 -19.80 -0.09 -0.68 16 9 C -0.07 -0.73 5.94 29.10 0.17 -0.56 16 10 C 0.46 9.23 7.95 71.24 0.57 9.80 16 11 O -0.54 -14.72 15.78 21.99 0.35 -14.37 16 12 O -0.36 -8.00 10.22 -51.41 -0.53 -8.53 16 13 C 0.08 2.10 5.47 71.98 0.39 2.49 16 14 C -0.09 -2.59 5.60 30.59 0.17 -2.41 16 15 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 16 S -0.18 -9.47 21.44 -56.49 -1.21 -10.68 16 17 C -0.54 -30.98 9.50 67.95 0.65 -30.34 16 18 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 19 C 0.02 1.04 5.49 84.86 0.47 1.50 16 20 N -0.91 -53.91 13.22 21.65 0.29 -53.63 16 21 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 C -0.12 -1.50 9.68 22.23 0.22 -1.29 16 26 C -0.06 -0.85 9.62 22.54 0.22 -0.63 16 27 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.14 2.31 7.65 -2.91 -0.02 2.29 16 31 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.15 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.15 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.07 1.83 8.13 -2.39 -0.02 1.82 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.15 1.62 7.61 -2.91 -0.02 1.59 16 Total: -1.00 -76.72 387.30 6.95 -69.77 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.02 Total: 9.70 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.24 Total: -18.06 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.29 Total: -53.63 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.41 Total: -42.55 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.21 Total: -10.68 kcal Total: -76.72 6.95 -69.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837877032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.682 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds