Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48503 * 109.47280 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 120.00069 * 3 2 1 7 7 C 1.38806 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99406 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99772 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46857 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47339 * 180.02562 * 12 11 10 14 14 C 1.34235 * 117.00385 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99671 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00281 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47172 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.70640 * 304.99999 * 17 16 14 19 19 C 1.53467 * 109.70857 * 184.41463 * 17 16 14 20 20 O 1.43169 * 108.25303 * 180.63817 * 19 17 16 21 21 C 1.36108 * 116.74111 * 46.11816 * 20 19 17 22 22 C 1.38700 * 119.39256 * 163.02522 * 21 20 19 23 23 C 1.38201 * 120.06492 * 179.66955 * 22 21 20 24 24 C 1.38250 * 120.11293 * 0.02562 * 23 22 21 25 25 C 1.38195 * 120.11299 * 0.03137 * 24 23 22 26 26 C 1.38702 * 120.06831 * 0.02562 * 25 24 23 27 27 O 1.36108 * 119.39988 * 179.86648 * 26 25 24 28 28 H 0.97001 * 120.00515 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46773 * 60.00158 * 10 9 7 30 30 H 1.08992 * 109.47421 * 300.00230 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00365 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00546 * 11 10 9 33 33 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 34 34 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 35 35 H 1.08993 * 109.47418 * 300.00024 * 16 14 13 36 36 H 1.09000 * 109.47089 * 60.00096 * 16 14 13 37 37 H 1.08998 * 109.71114 * 300.26845 * 19 17 16 38 38 H 1.09004 * 109.70775 * 60.89641 * 19 17 16 39 39 H 1.07997 * 119.97062 * 359.66781 * 22 21 20 40 40 H 1.08004 * 119.94198 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.94394 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.96788 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9794 -5.3243 -0.0017 12 6 3.1514 -6.3077 -0.0024 13 8 2.6423 -7.6675 -0.0026 14 6 3.5487 -8.6576 -0.0038 15 8 4.7284 -8.3967 -0.0041 16 6 3.0948 -10.0946 -0.0046 17 6 4.3168 -11.0154 -0.0052 18 1 4.9645 -10.7660 -0.8457 19 6 3.8632 -12.4772 -0.1173 20 8 5.0273 -13.3105 -0.1000 21 6 5.9635 -13.0351 0.8488 22 6 6.9223 -13.9891 1.1562 23 6 7.8835 -13.7215 2.1124 24 6 7.8920 -12.5029 2.7654 25 6 6.9389 -11.5485 2.4646 26 6 5.9706 -11.8110 1.5068 27 8 5.0368 -10.8623 1.2233 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1239 -3.7310 -0.8924 31 1 1.3716 -5.4845 0.8889 32 1 1.3699 -5.4843 -0.8911 33 1 3.7595 -6.1476 -0.8928 34 1 3.7606 -6.1476 0.8871 35 1 2.4958 -10.2870 0.8854 36 1 2.4950 -10.2856 -0.8945 37 1 3.2200 -12.7283 0.7261 38 1 3.3198 -12.6229 -1.0510 39 1 6.9176 -14.9419 0.6480 40 1 8.6289 -14.4659 2.3506 41 1 8.6448 -12.2965 3.5118 42 1 6.9480 -10.5972 2.9758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837986065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = -146.910090 kcal Electronic energy + Delta-G solvation = -25233.135204 eV Core-core repulsion = 21269.907856 eV Total energy + Delta-G solvation = -3963.227349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74358 -40.48309 -38.18087 -37.66748 -36.72816 -33.72835 -33.32832 -32.45825 -31.02742 -29.74725 -28.09104 -26.44720 -25.46856 -24.35711 -23.10663 -21.57082 -21.31510 -20.80293 -19.22936 -18.11270 -17.72033 -17.38843 -17.28139 -16.73470 -16.43609 -15.64884 -15.40412 -15.17061 -14.91673 -14.83151 -14.65542 -14.29363 -14.24866 -14.16428 -13.47367 -13.33553 -13.09596 -12.69188 -12.42049 -12.30957 -12.22188 -12.09689 -11.60069 -11.42718 -11.35339 -11.15483 -11.00077 -10.95645 -10.87618 -10.71375 -10.55609 -10.32027 -9.65844 -9.08366 -9.01068 -8.43397 -8.38304 -6.58399 -6.26121 -3.97450 0.93648 0.95288 2.05342 2.36522 2.59888 2.75643 3.20147 3.21997 3.26484 3.36902 3.49632 3.74649 3.99343 4.18589 4.20850 4.30494 4.54376 4.64703 4.69363 4.74063 4.86043 4.91671 5.04973 5.07616 5.09813 5.11029 5.15115 5.17484 5.36604 5.45909 5.48990 5.74768 5.78600 5.81815 5.86920 6.11360 6.13221 6.26360 6.39769 6.42154 6.53075 6.64530 7.04823 7.57370 7.62168 8.33138 9.20131 10.81963 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.001601 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.075569 B =17483.730572 C =18265.237285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.356 6.356 14 C 0.460 3.540 15 O -0.497 6.497 16 C -0.108 4.108 17 C 0.063 3.937 18 H 0.096 0.904 19 C 0.028 3.972 20 O -0.305 6.305 21 C 0.044 3.956 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.113 4.113 26 C 0.059 3.941 27 O -0.293 6.293 28 H 0.268 0.732 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -30.568 1.773 32.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.272 6.272 14 C 0.302 3.698 15 O -0.384 6.384 16 C -0.145 4.145 17 C 0.006 3.994 18 H 0.114 0.886 19 C -0.048 4.048 20 O -0.219 6.219 21 C -0.001 4.001 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.131 4.131 26 C 0.013 3.987 27 O -0.208 6.208 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.265 -30.480 1.735 31.904 hybrid contribution 1.834 1.517 -0.086 2.381 sum 11.099 -28.963 1.649 31.061 Atomic orbital electron populations 1.70003 1.05926 1.27543 1.47002 1.25014 0.95098 0.99113 0.94484 0.86203 0.79228 0.81094 0.78891 1.19911 1.20773 1.19900 1.22661 0.94572 0.90695 1.58872 0.90883 1.84638 1.08752 0.99213 1.96894 1.23184 1.03466 0.96349 1.03356 1.21286 0.96423 0.91579 1.04308 1.23286 0.97780 0.76412 1.02654 1.86457 1.40199 1.17033 1.83548 1.23188 0.84870 0.88506 0.73239 1.90718 1.18453 1.84842 1.44387 1.21336 0.97580 0.87921 1.07670 1.22915 0.93855 0.94822 0.87841 0.88588 1.23659 0.86683 0.88882 1.05572 1.86312 1.29127 1.55434 1.51044 1.18942 0.93521 0.93365 0.94232 1.20436 0.95136 0.98387 0.99320 1.20925 0.98755 0.97583 0.96521 1.20953 0.98554 0.93333 1.00464 1.20528 0.93090 1.00938 0.98575 1.18959 0.92961 0.87378 0.99363 1.86410 1.49304 1.46316 1.38730 0.92179 0.91726 0.91733 0.90332 0.90340 0.91141 0.91091 0.86125 0.85040 0.90015 0.85540 0.84861 0.85075 0.85020 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.05 5.47 37.16 0.20 1.25 16 13 O -0.36 -4.64 10.22 -39.27 -0.40 -5.04 16 14 C 0.46 5.51 7.85 36.00 0.28 5.79 16 15 O -0.50 -7.61 15.21 -23.83 -0.36 -7.98 16 16 C -0.11 -0.75 5.54 -27.88 -0.15 -0.91 16 17 C 0.06 0.53 2.55 -26.49 -0.07 0.46 16 18 H 0.10 0.91 7.96 -51.93 -0.41 0.50 16 19 C 0.03 0.17 6.56 37.40 0.25 0.42 16 20 O -0.30 -2.84 10.42 -32.87 -0.34 -3.18 16 21 C 0.04 0.45 6.49 -39.14 -0.25 0.19 16 22 C -0.11 -0.95 9.96 -39.42 -0.39 -1.35 16 23 C -0.12 -0.85 10.04 -39.59 -0.40 -1.25 16 24 C -0.11 -0.88 10.04 -39.59 -0.40 -1.28 16 25 C -0.11 -1.11 9.96 -39.43 -0.39 -1.50 16 26 C 0.06 0.65 6.49 -39.14 -0.25 0.39 16 27 O -0.29 -3.40 9.36 -44.07 -0.41 -3.82 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 30 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -35.05 375.68 -9.65 -44.70 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.88 Total: -2.11 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.32 Total: -14.14 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.73 Total: -25.04 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.52 Total: -20.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.05 -9.65 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837986065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.214 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds