Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48503 * 109.47280 * 240.00005 * 3 2 1 5 5 H 1.48497 * 109.47200 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 120.00069 * 3 2 1 7 7 C 1.38806 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99406 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99772 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46857 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47339 * 180.02562 * 12 11 10 14 14 C 1.34235 * 117.00385 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99671 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00281 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.47172 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.70640 * 304.99999 * 17 16 14 19 19 C 1.53467 * 109.70857 * 184.41463 * 17 16 14 20 20 O 1.43169 * 108.25303 * 180.63817 * 19 17 16 21 21 C 1.36108 * 116.74111 * 46.11816 * 20 19 17 22 22 C 1.38700 * 119.39256 * 163.02522 * 21 20 19 23 23 C 1.38201 * 120.06492 * 179.66955 * 22 21 20 24 24 C 1.38250 * 120.11293 * 0.02562 * 23 22 21 25 25 C 1.38195 * 120.11299 * 0.03137 * 24 23 22 26 26 C 1.38702 * 120.06831 * 0.02562 * 25 24 23 27 27 O 1.36108 * 119.39988 * 179.86648 * 26 25 24 28 28 H 0.97001 * 120.00515 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46773 * 60.00158 * 10 9 7 30 30 H 1.08992 * 109.47421 * 300.00230 * 10 9 7 31 31 H 1.09002 * 109.47398 * 300.00365 * 11 10 9 32 32 H 1.09001 * 109.47194 * 60.00546 * 11 10 9 33 33 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 34 34 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 35 35 H 1.08993 * 109.47418 * 300.00024 * 16 14 13 36 36 H 1.09000 * 109.47089 * 60.00096 * 16 14 13 37 37 H 1.08998 * 109.71114 * 300.26845 * 19 17 16 38 38 H 1.09004 * 109.70775 * 60.89641 * 19 17 16 39 39 H 1.07997 * 119.97062 * 359.66781 * 22 21 20 40 40 H 1.08004 * 119.94198 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.94394 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.96788 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9794 -5.3243 -0.0017 12 6 3.1514 -6.3077 -0.0024 13 8 2.6423 -7.6675 -0.0026 14 6 3.5487 -8.6576 -0.0038 15 8 4.7284 -8.3967 -0.0041 16 6 3.0948 -10.0946 -0.0046 17 6 4.3168 -11.0154 -0.0052 18 1 4.9645 -10.7660 -0.8457 19 6 3.8632 -12.4772 -0.1173 20 8 5.0273 -13.3105 -0.1000 21 6 5.9635 -13.0351 0.8488 22 6 6.9223 -13.9891 1.1562 23 6 7.8835 -13.7215 2.1124 24 6 7.8920 -12.5029 2.7654 25 6 6.9389 -11.5485 2.4646 26 6 5.9706 -11.8110 1.5068 27 8 5.0368 -10.8623 1.2233 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1239 -3.7310 -0.8924 31 1 1.3716 -5.4845 0.8889 32 1 1.3699 -5.4843 -0.8911 33 1 3.7595 -6.1476 -0.8928 34 1 3.7606 -6.1476 0.8871 35 1 2.4958 -10.2870 0.8854 36 1 2.4950 -10.2856 -0.8945 37 1 3.2200 -12.7283 0.7261 38 1 3.3198 -12.6229 -1.0510 39 1 6.9176 -14.9419 0.6480 40 1 8.6289 -14.4659 2.3506 41 1 8.6448 -12.2965 3.5118 42 1 6.9480 -10.5972 2.9758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837986065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = -166.855885 kcal Electronic energy + Delta-G solvation = -25234.000119 eV Core-core repulsion = 21269.907856 eV Total energy + Delta-G solvation = -3964.092263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40312 -41.46251 -38.83154 -38.33936 -37.76969 -34.96205 -34.60248 -34.12722 -31.64680 -30.40872 -28.87426 -27.97218 -27.23362 -25.07796 -23.76326 -22.82248 -22.26913 -21.48184 -19.93082 -19.57767 -18.81614 -18.49290 -17.99008 -17.77071 -17.33244 -16.90906 -16.31482 -16.22907 -16.14541 -15.89983 -15.59316 -15.47356 -14.90265 -14.89473 -14.82177 -14.32200 -14.14440 -13.91219 -13.76384 -13.18107 -13.14480 -12.94230 -12.84555 -12.77105 -12.65492 -12.41989 -12.39874 -12.17197 -11.99932 -11.78198 -11.54078 -11.53691 -11.34174 -11.15379 -10.38638 -9.65675 -9.09356 -8.69559 -8.39281 -6.16030 0.28797 0.31299 1.12780 1.25023 1.40019 1.40092 1.49265 1.80290 1.98423 2.20118 2.25877 2.73232 2.95172 3.11897 3.27734 3.37124 3.54047 3.72604 3.81797 3.84901 3.96210 4.10462 4.13329 4.21434 4.23331 4.29813 4.35841 4.39650 4.45498 4.52960 4.58516 4.63718 4.66383 4.88090 4.99507 5.10336 5.17487 5.21629 5.38166 5.42735 5.50666 5.70681 5.90637 6.16071 6.39398 6.64887 7.03043 8.69765 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.001601 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.075569 B =17483.730572 C =18265.237285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.073 0.927 9 S -0.181 6.181 10 C -0.093 4.093 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.355 6.355 14 C 0.457 3.543 15 O -0.536 6.536 16 C -0.097 4.097 17 C 0.057 3.943 18 H 0.078 0.922 19 C 0.029 3.971 20 O -0.317 6.317 21 C 0.029 3.971 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.135 4.135 26 C 0.031 3.969 27 O -0.320 6.320 28 H 0.272 0.728 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -32.158 1.626 34.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.188 4.188 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.692 4.692 8 H 0.091 0.909 9 S 0.047 5.953 10 C -0.242 4.242 11 C -0.123 4.123 12 C 0.006 3.994 13 O -0.272 6.272 14 C 0.301 3.699 15 O -0.426 6.426 16 C -0.133 4.133 17 C 0.000 4.000 18 H 0.096 0.904 19 C -0.046 4.046 20 O -0.232 6.232 21 C -0.016 4.016 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.013 4.013 27 O -0.235 6.235 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.193 0.807 37 H 0.112 0.888 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.953 -32.092 1.587 33.637 hybrid contribution 1.658 1.896 -0.032 2.519 sum 11.611 -30.196 1.554 32.389 Atomic orbital electron populations 1.70129 1.07607 1.28716 1.47692 1.26044 0.96042 1.03034 0.93656 0.85079 0.77963 0.76152 0.79308 1.18992 1.19832 1.19031 1.23035 0.94849 0.92047 1.59260 0.90863 1.84586 1.12927 1.00696 1.97066 1.23080 1.00857 0.96744 1.03545 1.21100 0.96965 0.89668 1.04593 1.22986 0.96588 0.77176 1.02668 1.86456 1.40466 1.16553 1.83698 1.24206 0.84246 0.89815 0.71619 1.90710 1.20128 1.85450 1.46270 1.21547 0.97412 0.83725 1.10644 1.23070 0.93826 0.96741 0.86340 0.90428 1.23928 0.85931 0.86716 1.08005 1.86278 1.29864 1.56117 1.50950 1.19187 0.94371 0.93490 0.94552 1.20805 0.94861 0.98777 0.99601 1.21331 0.98695 0.97838 0.95371 1.21287 0.98230 0.93064 1.00680 1.20743 0.94036 1.01536 0.99053 1.19243 0.93668 0.88002 1.00434 1.86363 1.49933 1.47175 1.40046 0.91854 0.91575 0.91390 0.90213 0.89922 0.90944 0.91406 0.84048 0.80727 0.88834 0.81939 0.83180 0.81937 0.82619 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.25 13.22 21.65 0.29 -53.96 16 2 C 0.02 0.99 5.49 84.86 0.47 1.46 16 3 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -31.35 9.50 67.96 0.65 -30.71 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.53 21.44 -56.49 -1.21 -10.74 16 10 C -0.09 -3.70 5.67 71.98 0.41 -3.29 16 11 C -0.08 -2.67 5.60 30.59 0.17 -2.49 16 12 C 0.08 2.26 5.47 71.98 0.39 2.65 16 13 O -0.36 -8.80 10.22 -51.47 -0.53 -9.33 16 14 C 0.46 10.54 7.85 71.23 0.56 11.10 16 15 O -0.54 -16.64 15.21 26.83 0.41 -16.23 16 16 C -0.10 -1.15 5.54 29.85 0.17 -0.98 16 17 C 0.06 0.92 2.55 30.75 0.08 1.00 16 18 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 19 C 0.03 0.31 6.56 72.14 0.47 0.78 16 20 O -0.32 -5.59 10.42 -82.55 -0.86 -6.45 16 21 C 0.03 0.57 6.49 22.56 0.15 0.72 16 22 C -0.12 -1.89 9.96 22.37 0.22 -1.67 16 23 C -0.11 -1.42 10.04 22.26 0.22 -1.20 16 24 C -0.11 -1.65 10.04 22.26 0.22 -1.43 16 25 C -0.13 -2.74 9.96 22.37 0.22 -2.52 16 26 C 0.03 0.71 6.49 22.56 0.15 0.86 16 27 O -0.32 -7.61 9.36 -71.85 -0.67 -8.29 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.18 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -78.55 375.68 5.02 -73.54 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.02 Total: 11.34 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 4.55 Total: -25.71 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.29 Total: -53.96 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.65 Total: -40.30 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.21 Total: -10.74 kcal Total: -78.55 5.02 -73.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837986065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.321 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds