Wall clock time and date at job start Tue Mar 31 2020 20:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47124 * 269.99569 * 3 2 1 5 5 H 1.48495 * 109.47276 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.47017 * 150.00038 * 3 2 1 7 7 C 1.38799 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00152 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.46678 * 179.97438 * 12 11 10 14 14 C 1.34230 * 116.99719 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00396 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00141 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47247 * 179.97438 * 16 14 13 18 18 H 1.08990 * 109.73965 * 55.60002 * 17 16 14 19 19 C 1.53473 * 109.70598 * 176.21226 * 17 16 14 20 20 O 1.43176 * 108.23685 * 179.42326 * 19 17 16 21 21 C 1.36109 * 116.69415 * 313.73864 * 20 19 17 22 22 C 1.38704 * 119.39308 * 197.13276 * 21 20 19 23 23 C 1.38190 * 120.06553 * 180.32905 * 22 21 20 24 24 C 1.38252 * 120.11367 * 359.97438 * 23 22 21 25 25 C 1.38194 * 120.11589 * 359.92851 * 24 23 22 26 26 C 1.38704 * 120.06350 * 0.04266 * 25 24 23 27 27 O 1.36115 * 119.39713 * 180.13084 * 26 25 24 28 28 H 0.97006 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47082 * 60.00406 * 10 9 7 30 30 H 1.09001 * 109.47162 * 299.99873 * 10 9 7 31 31 H 1.08998 * 109.46835 * 60.00149 * 11 10 9 32 32 H 1.09001 * 109.46850 * 299.99959 * 11 10 9 33 33 H 1.08998 * 109.47187 * 60.00348 * 12 11 10 34 34 H 1.09001 * 109.47240 * 299.99703 * 12 11 10 35 35 H 1.08996 * 109.46893 * 59.99893 * 16 14 13 36 36 H 1.08996 * 109.46821 * 299.99998 * 16 14 13 37 37 H 1.09001 * 109.71005 * 59.73173 * 19 17 16 38 38 H 1.09000 * 109.70753 * 299.10538 * 19 17 16 39 39 H 1.07996 * 119.96547 * 0.30314 * 22 21 20 40 40 H 1.08002 * 119.94577 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.94688 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.97058 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9847 0.0009 11 6 5.5956 -3.2365 0.0021 12 6 5.8612 -4.7433 0.0012 13 8 7.2934 -4.9823 0.0017 14 6 7.6976 -6.2622 0.0005 15 8 6.8818 -7.1535 -0.0004 16 6 9.1690 -6.5878 0.0004 17 6 9.3554 -8.1064 -0.0004 18 1 8.8250 -8.5419 -0.8471 19 6 10.8494 -8.4444 -0.0960 20 8 10.9883 -9.8693 -0.0807 21 6 10.2724 -10.5433 0.8604 22 6 10.6172 -11.8504 1.1711 23 6 9.8956 -12.5500 2.1195 24 6 8.8286 -11.9493 2.7614 25 6 8.4809 -10.6467 2.4579 26 6 9.2014 -9.9387 1.5075 27 8 8.8489 -8.6555 1.2211 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8893 30 1 3.6431 -3.4319 0.8907 31 1 6.0378 -2.7898 0.8926 32 1 6.0393 -2.7892 -0.8874 33 1 5.4191 -5.1897 -0.8895 34 1 5.4174 -5.1910 0.8905 35 1 9.6347 -6.1654 0.8908 36 1 9.6348 -6.1637 -0.8891 37 1 11.3788 -8.0141 0.7541 38 1 11.2579 -8.0452 -1.0244 39 1 11.4503 -12.3219 0.6711 40 1 10.1661 -13.5675 2.3603 41 1 8.2661 -12.4987 3.5019 42 1 7.6472 -10.1796 2.9611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837986066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:36 Heat of formation + Delta-G solvation = -146.287857 kcal Electronic energy + Delta-G solvation = -25273.246579 eV Core-core repulsion = 21310.046212 eV Total energy + Delta-G solvation = -3963.200367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76399 -40.52831 -38.19944 -37.68738 -36.77916 -33.80406 -33.40024 -32.47609 -31.03946 -29.76764 -28.12651 -26.50678 -25.62487 -24.39719 -23.12090 -21.65595 -21.38920 -20.83457 -19.24977 -18.13574 -17.76516 -17.38784 -17.30212 -16.79012 -16.48119 -15.66605 -15.42633 -15.22923 -15.02784 -14.94053 -14.71052 -14.31718 -14.27742 -14.18070 -13.50839 -13.22428 -13.07973 -12.84877 -12.51373 -12.46836 -12.28758 -12.21700 -11.61630 -11.57983 -11.42492 -11.25169 -11.12484 -11.00960 -10.90946 -10.71383 -10.40491 -10.26612 -9.84685 -9.04541 -9.02269 -8.64130 -8.44786 -7.00648 -6.31852 -4.05489 0.92501 0.94140 2.01390 2.29999 2.57840 2.73408 2.97635 3.27202 3.35748 3.41931 3.51382 3.71925 3.96441 4.18875 4.27660 4.28130 4.50642 4.63140 4.64637 4.69820 4.77336 4.83558 4.90381 5.00011 5.03820 5.07047 5.08404 5.10760 5.14385 5.34879 5.47584 5.64309 5.70341 5.77870 5.80978 6.00965 6.10426 6.25194 6.29688 6.32671 6.51159 6.53436 7.03292 7.57664 7.91685 8.41046 9.13396 10.77520 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.001627 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.001457 B =17205.642526 C =17874.095236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.356 6.356 14 C 0.460 3.540 15 O -0.495 6.495 16 C -0.107 4.107 17 C 0.063 3.937 18 H 0.096 0.904 19 C 0.028 3.972 20 O -0.305 6.305 21 C 0.044 3.956 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.113 4.113 26 C 0.059 3.941 27 O -0.293 6.293 28 H 0.271 0.729 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.109 -22.009 1.893 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.002 4.002 13 O -0.273 6.273 14 C 0.302 3.698 15 O -0.382 6.382 16 C -0.145 4.145 17 C 0.006 3.994 18 H 0.114 0.886 19 C -0.048 4.048 20 O -0.219 6.219 21 C -0.001 4.001 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.131 4.131 26 C 0.013 3.987 27 O -0.208 6.208 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.365 -21.201 1.858 33.883 hybrid contribution -0.986 -0.079 -0.122 0.996 sum 25.379 -21.280 1.736 33.165 Atomic orbital electron populations 1.69938 1.05918 1.27770 1.48012 1.24792 0.94522 0.99024 0.93279 0.86667 0.81729 0.83200 0.79733 1.19326 1.20018 1.16162 1.22123 0.86948 0.97530 1.58708 0.89298 1.84152 1.11853 1.04252 1.97560 1.22950 0.95977 1.00128 1.04256 1.21332 0.95960 0.92242 1.04391 1.23242 0.76028 0.98002 1.02886 1.86447 1.28984 1.28230 1.83648 1.23190 0.92053 0.81286 0.73283 1.90725 1.55394 1.47825 1.44243 1.21338 0.91732 0.93754 1.07647 1.22907 0.94783 0.93692 0.88057 0.88595 1.23657 0.95524 0.80075 1.05549 1.86320 1.64607 1.19320 1.51647 1.18942 0.92779 0.93929 0.94452 1.20437 1.01538 0.91961 0.99326 1.20925 0.96079 1.00152 0.96615 1.20958 0.97796 0.94052 1.00470 1.20530 0.99996 0.93979 0.98610 1.18958 0.94624 0.85635 0.99445 1.86403 1.70732 1.24335 1.39284 0.91910 0.91008 0.90958 0.90233 0.90265 0.90973 0.90923 0.86143 0.85052 0.90021 0.85563 0.84859 0.85063 0.85001 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.55 13.97 55.49 0.78 -25.77 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.29 27.74 -169.99 -4.72 16.57 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.51 -14.56 10.04 30.94 0.31 -14.25 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.30 16 9 S -0.21 -4.93 19.41 -107.50 -2.09 -7.02 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C 0.07 0.99 5.47 37.16 0.20 1.20 16 13 O -0.36 -4.42 10.22 -39.26 -0.40 -4.82 16 14 C 0.46 5.30 7.84 36.01 0.28 5.59 16 15 O -0.50 -7.41 15.19 -23.99 -0.36 -7.77 16 16 C -0.11 -0.71 5.55 -27.88 -0.15 -0.87 16 17 C 0.06 0.51 2.56 -26.49 -0.07 0.45 16 18 H 0.10 0.88 7.98 -51.93 -0.41 0.47 16 19 C 0.03 0.17 6.56 37.40 0.25 0.41 16 20 O -0.30 -2.78 10.42 -32.87 -0.34 -3.13 16 21 C 0.04 0.44 6.49 -39.14 -0.25 0.18 16 22 C -0.11 -0.94 9.96 -39.43 -0.39 -1.33 16 23 C -0.12 -0.84 10.04 -39.59 -0.40 -1.24 16 24 C -0.11 -0.87 10.04 -39.59 -0.40 -1.27 16 25 C -0.11 -1.09 9.96 -39.43 -0.39 -1.48 16 26 C 0.06 0.64 6.49 -39.14 -0.25 0.38 16 27 O -0.29 -3.34 9.32 -44.40 -0.41 -3.75 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 30 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 34 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 35 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -35.04 372.95 -9.14 -44.18 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.91 Total: -1.43 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.30 Total: -12.69 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.78 Total: -25.77 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.52 Total: -19.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.72 Total: 16.57 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.09 Total: -7.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.04 -9.14 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837986066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.107 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds