Wall clock time and date at job start Tue Mar 31 2020 20:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47124 * 269.99569 * 3 2 1 5 5 H 1.48495 * 109.47276 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.47017 * 150.00038 * 3 2 1 7 7 C 1.38799 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00152 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47246 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47063 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.46678 * 179.97438 * 12 11 10 14 14 C 1.34230 * 116.99719 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00396 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00141 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47247 * 179.97438 * 16 14 13 18 18 H 1.08990 * 109.73965 * 55.60002 * 17 16 14 19 19 C 1.53473 * 109.70598 * 176.21226 * 17 16 14 20 20 O 1.43176 * 108.23685 * 179.42326 * 19 17 16 21 21 C 1.36109 * 116.69415 * 313.73864 * 20 19 17 22 22 C 1.38704 * 119.39308 * 197.13276 * 21 20 19 23 23 C 1.38190 * 120.06553 * 180.32905 * 22 21 20 24 24 C 1.38252 * 120.11367 * 359.97438 * 23 22 21 25 25 C 1.38194 * 120.11589 * 359.92851 * 24 23 22 26 26 C 1.38704 * 120.06350 * 0.04266 * 25 24 23 27 27 O 1.36115 * 119.39713 * 180.13084 * 26 25 24 28 28 H 0.97006 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47082 * 60.00406 * 10 9 7 30 30 H 1.09001 * 109.47162 * 299.99873 * 10 9 7 31 31 H 1.08998 * 109.46835 * 60.00149 * 11 10 9 32 32 H 1.09001 * 109.46850 * 299.99959 * 11 10 9 33 33 H 1.08998 * 109.47187 * 60.00348 * 12 11 10 34 34 H 1.09001 * 109.47240 * 299.99703 * 12 11 10 35 35 H 1.08996 * 109.46893 * 59.99893 * 16 14 13 36 36 H 1.08996 * 109.46821 * 299.99998 * 16 14 13 37 37 H 1.09001 * 109.71005 * 59.73173 * 19 17 16 38 38 H 1.09000 * 109.70753 * 299.10538 * 19 17 16 39 39 H 1.07996 * 119.96547 * 0.30314 * 22 21 20 40 40 H 1.08002 * 119.94577 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.94688 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.97058 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9847 0.0009 11 6 5.5956 -3.2365 0.0021 12 6 5.8612 -4.7433 0.0012 13 8 7.2934 -4.9823 0.0017 14 6 7.6976 -6.2622 0.0005 15 8 6.8818 -7.1535 -0.0004 16 6 9.1690 -6.5878 0.0004 17 6 9.3554 -8.1064 -0.0004 18 1 8.8250 -8.5419 -0.8471 19 6 10.8494 -8.4444 -0.0960 20 8 10.9883 -9.8693 -0.0807 21 6 10.2724 -10.5433 0.8604 22 6 10.6172 -11.8504 1.1711 23 6 9.8956 -12.5500 2.1195 24 6 8.8286 -11.9493 2.7614 25 6 8.4809 -10.6467 2.4579 26 6 9.2014 -9.9387 1.5075 27 8 8.8489 -8.6555 1.2211 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8893 30 1 3.6431 -3.4319 0.8907 31 1 6.0378 -2.7898 0.8926 32 1 6.0393 -2.7892 -0.8874 33 1 5.4191 -5.1897 -0.8895 34 1 5.4174 -5.1910 0.8905 35 1 9.6347 -6.1654 0.8908 36 1 9.6348 -6.1637 -0.8891 37 1 11.3788 -8.0141 0.7541 38 1 11.2579 -8.0452 -1.0244 39 1 11.4503 -12.3219 0.6711 40 1 10.1661 -13.5675 2.3603 41 1 8.2661 -12.4987 3.5019 42 1 7.6472 -10.1796 2.9611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837986066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:35 Heat of formation + Delta-G solvation = -166.825768 kcal Electronic energy + Delta-G solvation = -25274.137169 eV Core-core repulsion = 21310.046212 eV Total energy + Delta-G solvation = -3964.090957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40529 -41.46418 -38.83430 -38.34094 -37.77497 -34.98998 -34.69884 -34.13334 -31.64836 -30.41175 -28.88343 -28.06163 -27.37574 -25.08739 -23.76672 -22.86206 -22.27448 -21.48347 -19.93753 -19.63221 -18.81172 -18.49661 -17.99357 -17.77807 -17.34667 -17.11230 -16.30920 -16.24018 -16.16241 -15.86447 -15.57489 -15.47841 -14.96003 -14.89541 -14.82306 -14.35359 -14.34405 -14.07629 -13.79595 -13.36354 -13.19248 -13.03989 -12.84955 -12.77298 -12.63245 -12.41445 -12.28482 -12.16578 -11.99940 -11.83439 -11.64204 -11.54576 -11.37167 -11.17744 -10.62697 -9.65879 -9.09525 -9.02245 -8.53272 -6.25869 0.28596 0.31123 1.04502 1.13157 1.32396 1.41202 1.49690 1.80217 1.98515 2.20269 2.23912 2.64080 2.73035 2.84756 3.12777 3.36720 3.53276 3.72379 3.80296 3.83577 3.93715 4.08247 4.11591 4.21382 4.22909 4.26421 4.35679 4.39640 4.45100 4.50939 4.58363 4.62351 4.64606 4.87933 4.96864 5.07596 5.17176 5.21474 5.41855 5.50564 5.67824 5.70433 5.90584 6.08699 6.39315 6.65059 6.90038 8.59813 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.001627 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.001457 B =17205.642526 C =17874.095236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.226 1.226 7 C -0.529 4.529 8 H 0.050 0.950 9 S -0.203 6.203 10 C -0.076 4.076 11 C -0.086 4.086 12 C 0.079 3.921 13 O -0.353 6.353 14 C 0.457 3.543 15 O -0.537 6.537 16 C -0.096 4.096 17 C 0.056 3.944 18 H 0.077 0.923 19 C 0.029 3.971 20 O -0.317 6.317 21 C 0.029 3.971 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.135 4.135 26 C 0.032 3.968 27 O -0.320 6.320 28 H 0.277 0.723 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.176 0.824 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.463 -21.943 1.755 36.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.676 4.676 8 H 0.068 0.932 9 S 0.025 5.975 10 C -0.224 4.224 11 C -0.125 4.125 12 C 0.003 3.997 13 O -0.270 6.270 14 C 0.301 3.699 15 O -0.426 6.426 16 C -0.133 4.133 17 C 0.000 4.000 18 H 0.095 0.905 19 C -0.046 4.046 20 O -0.232 6.232 21 C -0.016 4.016 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.013 4.013 27 O -0.235 6.235 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.193 0.807 37 H 0.112 0.888 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 29.734 -21.140 1.721 36.524 hybrid contribution -2.046 -0.275 -0.079 2.065 sum 27.689 -21.415 1.642 35.043 Atomic orbital electron populations 1.70045 1.07747 1.29192 1.48977 1.25815 0.95445 1.02902 0.92599 0.85688 0.80789 0.78386 0.80324 1.18451 1.18761 1.14960 1.22367 0.90206 0.96332 1.58713 0.93210 1.83759 1.07368 1.08750 1.97591 1.22986 0.99081 0.96266 1.04098 1.21145 0.92726 0.93397 1.05213 1.22976 0.77213 0.96762 1.02700 1.86445 1.27758 1.29060 1.83736 1.24213 0.93833 0.80238 0.71627 1.90720 1.56927 1.48709 1.46222 1.21551 0.88174 0.92845 1.10690 1.23076 0.96107 0.94357 0.86502 0.90490 1.23933 0.93917 0.78743 1.08006 1.86286 1.64480 1.20907 1.51535 1.19181 0.92919 0.94734 0.94764 1.20804 1.02124 0.91526 0.99580 1.21326 0.95120 1.01317 0.95490 1.21288 0.98039 0.93277 1.00673 1.20742 1.00327 0.95182 0.99140 1.19237 0.95666 0.85920 1.00481 1.86357 1.71729 1.24799 1.40620 0.91353 0.91148 0.91292 0.89544 0.89253 0.91024 0.91482 0.83972 0.80673 0.88800 0.81928 0.83176 0.81961 0.82658 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.77 13.97 21.65 0.30 -56.47 16 2 C 0.04 2.18 5.50 84.86 0.47 2.65 16 3 Si 0.93 43.54 27.74 68.60 1.90 45.44 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.23 -10.13 6.74 99.48 0.67 -9.46 16 7 C -0.53 -31.14 10.04 67.95 0.68 -30.45 16 8 H 0.05 3.20 8.03 -2.91 -0.02 3.18 16 9 S -0.20 -9.55 19.41 -56.49 -1.10 -10.65 16 10 C -0.08 -2.83 5.67 71.98 0.41 -2.42 16 11 C -0.09 -2.44 5.60 30.60 0.17 -2.27 16 12 C 0.08 2.06 5.47 71.98 0.39 2.46 16 13 O -0.35 -8.14 10.22 -51.41 -0.53 -8.67 16 14 C 0.46 10.03 7.84 71.24 0.56 10.59 16 15 O -0.54 -16.31 15.19 26.99 0.41 -15.90 16 16 C -0.10 -1.04 5.55 29.85 0.17 -0.87 16 17 C 0.06 0.87 2.56 30.75 0.08 0.95 16 18 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 19 C 0.03 0.29 6.56 72.14 0.47 0.76 16 20 O -0.32 -5.46 10.42 -82.57 -0.86 -6.32 16 21 C 0.03 0.57 6.49 22.56 0.15 0.71 16 22 C -0.12 -1.86 9.96 22.37 0.22 -1.64 16 23 C -0.11 -1.41 10.04 22.26 0.22 -1.19 16 24 C -0.11 -1.65 10.04 22.26 0.22 -1.42 16 25 C -0.14 -2.73 9.96 22.37 0.22 -2.50 16 26 C 0.03 0.71 6.49 22.56 0.15 0.86 16 27 O -0.32 -7.46 9.32 -71.62 -0.67 -8.13 16 28 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 29 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -79.24 372.95 5.03 -74.21 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.98 Total: 10.28 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 4.58 Total: -23.80 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.30 Total: -56.47 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.64 Total: -39.01 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.10 Total: -10.65 kcal Total: -79.24 5.03 -74.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837986066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.620 kcal (2) G-P(sol) polarization free energy of solvation -79.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds