Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48491 * 109.47189 * 270.00248 * 3 2 1 5 5 H 1.48502 * 109.47088 * 30.00478 * 3 2 1 6 6 H 1.48500 * 109.46824 * 150.00165 * 3 2 1 7 7 C 1.37878 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99541 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00268 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99964 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47268 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47539 * 64.99818 * 12 11 10 14 14 C 1.34226 * 117.00037 * 180.02562 * 13 12 11 15 15 O 1.20822 * 120.00371 * 359.97438 * 14 13 12 16 16 C 1.50711 * 119.99824 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47008 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.55870 * 54.79336 * 17 16 14 19 19 C 1.53734 * 109.55428 * 175.00185 * 17 16 14 20 20 S 1.81942 * 107.13738 * 187.01124 * 19 17 16 21 21 C 1.76589 * 101.89681 * 315.74511 * 20 19 17 22 22 C 1.38976 * 118.89029 * 193.43669 * 21 20 19 23 23 C 1.38079 * 120.26526 * 180.09311 * 22 21 20 24 24 C 1.38270 * 119.74928 * 0.51184 * 23 22 21 25 25 C 1.37960 * 120.24783 * 359.61066 * 24 23 22 26 26 C 1.38979 * 120.86578 * 13.71126 * 21 20 19 27 27 O 1.35298 * 123.68205 * 359.08481 * 26 21 20 28 28 H 0.96995 * 119.99754 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46816 * 60.00094 * 9 7 2 30 30 H 1.08996 * 109.46976 * 300.00199 * 9 7 2 31 31 H 1.09001 * 109.47391 * 59.99646 * 11 10 9 32 32 H 1.09003 * 109.47240 * 300.00075 * 11 10 9 33 33 H 1.09005 * 109.46683 * 304.99235 * 12 11 10 34 34 H 1.09001 * 109.47533 * 184.99893 * 12 11 10 35 35 H 1.09000 * 109.46940 * 60.00127 * 16 14 13 36 36 H 1.08993 * 109.46887 * 299.99697 * 16 14 13 37 37 H 1.08998 * 109.92326 * 67.60502 * 19 17 16 38 38 H 1.08994 * 109.98710 * 306.45323 * 19 17 16 39 39 H 1.08006 * 119.86821 * 0.32070 * 22 21 20 40 40 H 1.08001 * 120.12469 * 180.27587 * 23 22 21 41 41 H 1.08008 * 119.87577 * 179.58379 * 24 23 22 42 42 H 1.07998 * 119.69650 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6478 -5.9562 -0.0004 13 8 3.3983 -5.8888 1.2408 14 6 4.3928 -6.7760 1.4005 15 8 4.6283 -7.5825 0.5322 16 6 5.2158 -6.7661 2.6630 17 6 6.2741 -7.8686 2.5905 18 1 6.8654 -7.7478 1.6828 19 6 7.1938 -7.7807 3.8193 20 16 8.5436 -8.9738 3.5652 21 6 7.6707 -10.3907 2.9745 22 6 8.3283 -11.6142 2.9300 23 6 7.6735 -12.7400 2.4713 24 6 6.3615 -12.6448 2.0452 25 6 5.7043 -11.4324 2.0847 26 6 6.3498 -10.2902 2.5540 27 8 5.6399 -9.1387 2.5789 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8913 32 1 0.9445 -4.9827 0.8886 33 1 3.3219 -5.7956 -0.8419 34 1 2.1819 -6.9375 -0.0904 35 1 4.5668 -6.9407 3.5211 36 1 5.7064 -5.7986 2.7693 37 1 6.6359 -8.0373 4.7199 38 1 7.6004 -6.7734 3.9089 39 1 9.3546 -11.6855 3.2590 40 1 8.1853 -13.6905 2.4419 41 1 5.8495 -13.5227 1.6798 42 1 4.6797 -11.3682 1.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838265437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -143.899586 kcal Electronic energy + Delta-G solvation = -25685.047582 eV Core-core repulsion = 21721.950778 eV Total energy + Delta-G solvation = -3963.096804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86822 -40.12064 -38.20476 -37.07123 -36.04456 -33.84191 -32.79789 -31.40117 -30.38529 -30.21418 -28.80196 -26.92436 -24.24030 -23.28629 -22.64744 -22.32102 -21.71741 -20.70080 -18.85666 -17.95130 -17.60500 -16.91577 -16.64157 -16.48518 -16.38220 -15.63273 -15.44440 -15.25589 -14.70536 -14.58593 -14.42611 -14.30972 -13.85318 -13.76554 -13.46277 -13.37376 -13.01337 -12.61339 -12.57911 -12.23330 -11.96971 -11.90902 -11.75349 -11.46337 -11.26476 -10.96364 -10.87555 -10.79487 -10.57945 -10.42301 -10.37160 -10.09841 -10.04381 -9.16131 -8.90793 -8.76838 -8.24485 -7.78848 -6.14700 -4.16526 0.77214 0.99434 1.05324 1.78633 2.21866 2.57504 2.67006 3.27981 3.33057 3.34352 3.38147 3.86079 4.18538 4.29615 4.34786 4.41546 4.64366 4.65750 4.69576 4.85221 4.88391 4.94691 5.05084 5.06586 5.19507 5.20465 5.21877 5.34179 5.42901 5.54615 5.76651 5.83742 5.87989 5.90098 6.05490 6.12457 6.35493 6.55812 7.02431 7.11229 7.36740 7.74793 7.79174 8.09483 8.49042 8.95819 9.48261 10.96804 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.001931 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.444464 B =14499.483206 C =15502.817594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.340 6.340 14 C 0.462 3.538 15 O -0.505 6.505 16 C -0.105 4.105 17 C 0.108 3.892 18 H 0.095 0.905 19 C -0.143 4.143 20 S -0.111 6.111 21 C -0.164 4.164 22 C -0.065 4.065 23 C -0.140 4.140 24 C -0.085 4.085 25 C -0.132 4.132 26 C 0.142 3.858 27 O -0.306 6.306 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.339 -24.327 8.339 29.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.256 6.256 14 C 0.304 3.696 15 O -0.393 6.393 16 C -0.144 4.144 17 C 0.050 3.950 18 H 0.113 0.887 19 C -0.292 4.292 20 S 0.132 5.868 21 C -0.277 4.277 22 C -0.088 4.088 23 C -0.159 4.159 24 C -0.105 4.105 25 C -0.152 4.152 26 C 0.091 3.909 27 O -0.220 6.220 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.451 -24.097 8.310 29.807 hybrid contribution -1.132 0.713 -0.312 1.373 sum 14.319 -23.385 7.998 28.563 Atomic orbital electron populations 1.69959 1.06097 1.27218 1.50452 1.24958 0.95005 0.99472 0.95112 0.86319 0.79650 0.82176 0.78249 1.20457 1.21053 1.19614 1.21039 0.94075 0.89280 1.50937 0.91524 1.20242 0.88752 0.83482 0.95534 1.87910 1.35347 1.12617 1.95233 1.22325 0.93262 0.85449 1.00601 1.23220 0.93665 0.98816 0.84087 1.86581 1.43428 1.53924 1.41712 1.23231 0.79555 0.78254 0.88571 1.90683 1.67732 1.37589 1.43336 1.21419 0.97058 0.99687 0.96190 1.22318 0.93667 0.81427 0.97568 0.88745 1.24557 0.99194 1.03327 1.02086 1.85709 1.12692 1.06087 1.82287 1.21587 0.97002 0.98884 1.10213 1.20657 0.99570 0.90090 0.98502 1.21014 0.95149 0.98218 1.01562 1.20990 0.94639 0.96843 0.98061 1.20746 1.01536 0.90816 1.02110 1.18580 0.90018 0.86252 0.96053 1.85378 1.36895 1.11411 1.88357 0.92614 0.97594 0.97469 0.91911 0.93177 0.90473 0.90398 0.86144 0.84730 0.87388 0.84898 0.85256 0.85213 0.85029 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -15.04 9.43 -34.44 -0.32 -15.36 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.19 5.25 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.34 10.30 -38.80 -0.40 -9.74 16 11 C 0.06 1.10 6.33 37.15 0.24 1.34 16 12 C 0.08 1.18 5.84 37.15 0.22 1.40 16 13 O -0.34 -5.43 10.19 -42.01 -0.43 -5.85 16 14 C 0.46 6.39 7.84 36.01 0.28 6.67 16 15 O -0.51 -8.18 15.19 -23.95 -0.36 -8.54 16 16 C -0.10 -0.96 5.53 -27.88 -0.15 -1.12 16 17 C 0.11 1.06 2.21 -26.35 -0.06 1.00 16 18 H 0.09 1.04 7.92 -51.93 -0.41 0.62 16 19 C -0.14 -1.07 6.07 37.54 0.23 -0.84 16 20 S -0.11 -1.04 22.19 -107.50 -2.39 -3.42 16 21 C -0.16 -1.74 6.06 -39.03 -0.24 -1.98 16 22 C -0.07 -0.58 9.72 -39.37 -0.38 -0.96 16 23 C -0.14 -1.07 10.06 -39.63 -0.40 -1.47 16 24 C -0.09 -0.69 10.02 -39.67 -0.40 -1.08 16 25 C -0.13 -1.35 9.88 -39.27 -0.39 -1.74 16 26 C 0.14 1.64 6.52 -38.90 -0.25 1.39 16 27 O -0.31 -3.68 8.76 -31.60 -0.28 -3.96 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 35 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -34.75 375.14 -9.88 -44.63 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.87 Total: -3.73 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.52 Total: -5.80 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.47 Total: -28.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.39 Total: -3.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.75 -9.88 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838265437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.265 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds