Wall clock time and date at job start Tue Mar 31 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48491 * 109.47189 * 270.00248 * 3 2 1 5 5 H 1.48502 * 109.47088 * 30.00478 * 3 2 1 6 6 H 1.48500 * 109.46824 * 150.00165 * 3 2 1 7 7 C 1.37878 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99541 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00268 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99964 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47268 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47539 * 64.99818 * 12 11 10 14 14 C 1.34226 * 117.00037 * 180.02562 * 13 12 11 15 15 O 1.20822 * 120.00371 * 359.97438 * 14 13 12 16 16 C 1.50711 * 119.99824 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47008 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.55870 * 54.79336 * 17 16 14 19 19 C 1.53734 * 109.55428 * 175.00185 * 17 16 14 20 20 S 1.81942 * 107.13738 * 187.01124 * 19 17 16 21 21 C 1.76589 * 101.89681 * 315.74511 * 20 19 17 22 22 C 1.38976 * 118.89029 * 193.43669 * 21 20 19 23 23 C 1.38079 * 120.26526 * 180.09311 * 22 21 20 24 24 C 1.38270 * 119.74928 * 0.51184 * 23 22 21 25 25 C 1.37960 * 120.24783 * 359.61066 * 24 23 22 26 26 C 1.38979 * 120.86578 * 13.71126 * 21 20 19 27 27 O 1.35298 * 123.68205 * 359.08481 * 26 21 20 28 28 H 0.96995 * 119.99754 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46816 * 60.00094 * 9 7 2 30 30 H 1.08996 * 109.46976 * 300.00199 * 9 7 2 31 31 H 1.09001 * 109.47391 * 59.99646 * 11 10 9 32 32 H 1.09003 * 109.47240 * 300.00075 * 11 10 9 33 33 H 1.09005 * 109.46683 * 304.99235 * 12 11 10 34 34 H 1.09001 * 109.47533 * 184.99893 * 12 11 10 35 35 H 1.09000 * 109.46940 * 60.00127 * 16 14 13 36 36 H 1.08993 * 109.46887 * 299.99697 * 16 14 13 37 37 H 1.08998 * 109.92326 * 67.60502 * 19 17 16 38 38 H 1.08994 * 109.98710 * 306.45323 * 19 17 16 39 39 H 1.08006 * 119.86821 * 0.32070 * 22 21 20 40 40 H 1.08001 * 120.12469 * 180.27587 * 23 22 21 41 41 H 1.08008 * 119.87577 * 179.58379 * 24 23 22 42 42 H 1.07998 * 119.69650 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6478 -5.9562 -0.0004 13 8 3.3983 -5.8888 1.2408 14 6 4.3928 -6.7760 1.4005 15 8 4.6283 -7.5825 0.5322 16 6 5.2158 -6.7661 2.6630 17 6 6.2741 -7.8686 2.5905 18 1 6.8654 -7.7478 1.6828 19 6 7.1938 -7.7807 3.8193 20 16 8.5436 -8.9738 3.5652 21 6 7.6707 -10.3907 2.9745 22 6 8.3283 -11.6142 2.9300 23 6 7.6735 -12.7400 2.4713 24 6 6.3615 -12.6448 2.0452 25 6 5.7043 -11.4324 2.0847 26 6 6.3498 -10.2902 2.5540 27 8 5.6399 -9.1387 2.5789 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8913 32 1 0.9445 -4.9827 0.8886 33 1 3.3219 -5.7956 -0.8419 34 1 2.1819 -6.9375 -0.0904 35 1 4.5668 -6.9407 3.5211 36 1 5.7064 -5.7986 2.7693 37 1 6.6359 -8.0373 4.7199 38 1 7.6004 -6.7734 3.9089 39 1 9.3546 -11.6855 3.2590 40 1 8.1853 -13.6905 2.4419 41 1 5.8495 -13.5227 1.6798 42 1 4.6797 -11.3682 1.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838265437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:44 Heat of formation + Delta-G solvation = -163.771463 kcal Electronic energy + Delta-G solvation = -25685.909291 eV Core-core repulsion = 21721.950778 eV Total energy + Delta-G solvation = -3963.958513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80778 -41.05752 -39.02387 -38.62851 -37.40881 -34.95137 -34.60004 -32.09146 -31.79043 -30.90084 -29.76202 -28.88846 -25.05223 -24.56416 -24.08878 -23.58167 -22.70120 -21.65885 -19.58966 -18.97663 -18.70226 -18.36220 -17.94716 -17.75683 -17.30520 -17.03598 -16.60337 -16.38843 -16.15183 -15.97744 -15.25495 -15.19081 -15.08827 -14.60299 -14.55334 -14.31969 -14.03696 -13.78331 -13.68565 -13.37520 -13.20523 -13.05177 -12.89568 -12.70361 -12.54788 -12.45456 -12.40482 -12.02541 -11.96553 -11.73977 -11.60345 -11.28537 -11.16959 -10.89968 -10.76812 -10.27924 -9.47872 -8.49322 -8.32372 -6.44512 0.09360 0.29578 0.39482 1.09007 1.14917 1.40948 1.43413 1.55472 1.64341 1.87022 2.34415 2.66233 3.01647 3.04631 3.14580 3.44303 3.58755 3.73658 3.86107 3.91577 4.07914 4.08717 4.14702 4.23398 4.35376 4.38630 4.40983 4.45161 4.50288 4.55914 4.65531 4.67631 4.85239 4.87446 5.07779 5.17134 5.26325 5.41773 5.47011 5.54233 5.74634 5.94733 6.36726 6.48980 6.67531 6.79049 7.26963 8.79725 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.001931 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.444464 B =14499.483206 C =15502.817594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.054 3.946 12 C 0.080 3.920 13 O -0.357 6.357 14 C 0.459 3.541 15 O -0.534 6.534 16 C -0.097 4.097 17 C 0.107 3.893 18 H 0.075 0.925 19 C -0.132 4.132 20 S -0.127 6.127 21 C -0.181 4.181 22 C -0.075 4.075 23 C -0.135 4.135 24 C -0.083 4.083 25 C -0.153 4.153 26 C 0.114 3.886 27 O -0.326 6.326 28 H 0.271 0.729 29 H -0.009 1.009 30 H -0.010 1.010 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.118 0.882 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.596 -24.508 9.190 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.023 4.023 12 C 0.006 3.994 13 O -0.273 6.273 14 C 0.303 3.697 15 O -0.424 6.424 16 C -0.135 4.135 17 C 0.049 3.951 18 H 0.093 0.907 19 C -0.280 4.280 20 S 0.116 5.884 21 C -0.294 4.294 22 C -0.097 4.097 23 C -0.154 4.154 24 C -0.103 4.103 25 C -0.173 4.173 26 C 0.064 3.936 27 O -0.241 6.241 28 H 0.080 0.920 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.136 0.864 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.177 0.823 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.710 -24.308 9.165 30.889 hybrid contribution -1.544 0.619 -0.599 1.768 sum 15.166 -23.689 8.566 29.403 Atomic orbital electron populations 1.70060 1.07685 1.28669 1.50402 1.25956 0.95995 1.03360 0.93941 0.85183 0.78418 0.77036 0.78784 1.19425 1.19911 1.18795 1.21376 0.94111 0.90830 1.52333 0.92053 1.19882 0.88592 0.84401 0.93900 1.87854 1.35480 1.14125 1.95328 1.22633 0.94488 0.83373 1.01796 1.23137 0.93152 0.98957 0.84136 1.86579 1.44239 1.54907 1.41594 1.24116 0.78905 0.77074 0.89620 1.90670 1.68345 1.38592 1.44743 1.21607 0.96753 1.00923 0.94227 1.22341 0.93882 0.80972 0.97920 0.90662 1.24603 0.98108 1.04141 1.01140 1.85654 1.13890 1.06583 1.82298 1.21794 0.96929 0.99908 1.10733 1.20996 1.00330 0.90018 0.98403 1.21418 0.94956 0.99086 0.99952 1.21350 0.94939 0.96874 0.97099 1.20968 1.01760 0.91626 1.02918 1.18862 0.90793 0.86479 0.97476 1.85343 1.37845 1.12116 1.88768 0.92023 0.99111 0.99174 0.90208 0.92469 0.91154 0.87764 0.83992 0.81789 0.86350 0.82125 0.83847 0.82118 0.82313 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -32.42 9.43 25.60 0.24 -32.18 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.48 5.69 71.24 0.41 11.89 16 10 O -0.41 -19.76 10.30 -145.57 -1.50 -21.25 16 11 C 0.05 1.94 6.33 71.98 0.46 2.39 16 12 C 0.08 2.46 5.84 71.98 0.42 2.88 16 13 O -0.36 -11.22 10.19 -48.73 -0.50 -11.72 16 14 C 0.46 12.53 7.84 71.24 0.56 13.09 16 15 O -0.53 -17.50 15.19 26.95 0.41 -17.09 16 16 C -0.10 -1.64 5.53 29.85 0.17 -1.48 16 17 C 0.11 2.03 2.21 30.84 0.07 2.10 16 18 H 0.08 1.69 7.92 -2.39 -0.02 1.67 16 19 C -0.13 -1.77 6.07 72.23 0.44 -1.33 16 20 S -0.13 -2.30 22.19 -56.49 -1.25 -3.55 16 21 C -0.18 -3.81 6.06 22.62 0.14 -3.67 16 22 C -0.07 -1.26 9.72 22.41 0.22 -1.04 16 23 C -0.13 -1.80 10.06 22.24 0.22 -1.58 16 24 C -0.08 -1.23 10.02 22.21 0.22 -1.00 16 25 C -0.15 -3.16 9.88 22.47 0.22 -2.94 16 26 C 0.11 2.69 6.52 22.71 0.15 2.84 16 27 O -0.33 -7.93 8.76 -72.43 -0.63 -8.57 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.57 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.26 8.13 -2.38 -0.02 2.24 16 34 H 0.10 2.67 8.13 -2.39 -0.02 2.65 16 35 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -76.39 375.14 4.24 -72.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.02 Total: 8.28 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.39 Total: -9.23 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.86 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -2.22 Total: -58.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.25 Total: -3.55 kcal Total: -76.39 4.24 -72.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838265437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.622 kcal (2) G-P(sol) polarization free energy of solvation -76.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds