Wall clock time and date at job start Tue Mar 31 2020 20:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99893 * 2 1 4 4 C 1.53001 * 109.47443 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46744 * 65.00078 * 4 3 2 6 6 C 1.36933 * 120.00118 * 270.00212 * 5 4 3 7 7 H 1.07998 * 120.00069 * 143.93181 * 6 5 4 8 8 C 1.38808 * 120.00095 * 323.92523 * 6 5 4 9 9 N 1.31625 * 120.00025 * 155.52652 * 8 6 5 10 10 Si 1.86806 * 120.00154 * 335.53200 * 8 6 5 11 11 H 1.48503 * 109.47037 * 95.57299 * 10 8 6 12 12 H 1.48493 * 109.47088 * 215.57320 * 10 8 6 13 13 H 1.48500 * 109.47110 * 335.57443 * 10 8 6 14 14 C 1.46505 * 119.99924 * 90.00368 * 5 4 3 15 15 N 1.46502 * 109.47050 * 258.88086 * 14 5 4 16 16 N 1.39729 * 119.96134 * 75.14409 * 15 14 5 17 17 N 1.28353 * 122.95592 * 179.97438 * 16 15 14 18 18 C 1.35631 * 121.97015 * 0.02562 * 17 16 15 19 19 C 1.39740 * 121.31448 * 179.97438 * 18 17 16 20 20 C 1.37609 * 119.75982 * 180.02562 * 19 18 17 21 21 C 1.38992 * 120.79372 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.74534 * 180.02562 * 21 20 19 23 23 C 1.37880 * 120.50552 * 0.06067 * 21 20 19 24 24 C 1.39351 * 119.55829 * 359.91851 * 23 21 20 25 25 C 1.35398 * 119.95418 * 255.39503 * 15 14 5 26 26 O 1.21738 * 121.31827 * 359.75380 * 25 15 14 27 27 H 1.08998 * 109.46687 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47080 * 299.99572 * 1 2 3 29 29 H 1.08998 * 109.47066 * 60.00036 * 1 2 3 30 30 H 1.08997 * 109.47023 * 60.00120 * 3 2 1 31 31 H 1.09004 * 109.47581 * 300.00575 * 3 2 1 32 32 H 1.09002 * 109.46974 * 305.00184 * 4 3 2 33 33 H 1.08994 * 109.47347 * 185.00199 * 4 3 2 34 34 H 0.97005 * 119.99857 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47019 * 138.87538 * 14 5 4 36 36 H 1.09000 * 109.46854 * 18.87594 * 14 5 4 37 37 H 1.08004 * 120.11862 * 0.04307 * 19 18 17 38 38 H 1.07999 * 119.60343 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.21458 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0978 -0.7973 -1.3345 7 1 3.8463 -1.3064 -2.2532 8 6 4.5441 -1.5230 -0.2387 9 7 4.2237 -2.7937 -0.1161 10 14 5.5993 -0.6962 1.0623 11 1 4.7368 -0.2366 2.1805 12 1 6.6013 -1.6644 1.5757 13 1 6.2984 0.4699 0.4650 14 6 4.2883 1.4000 -2.4130 15 7 3.1633 1.3711 -3.3511 16 7 2.0004 2.0923 -3.0685 17 7 0.9816 2.1081 -3.8490 18 6 0.9605 1.4180 -5.0164 19 6 -0.1564 1.4444 -5.8558 20 6 -0.1434 0.7317 -7.0328 21 6 0.9694 -0.0161 -7.3996 22 17 0.9566 -0.9045 -8.8910 23 6 2.0829 -0.0583 -6.5876 24 6 2.0892 0.6571 -5.3918 25 6 3.2500 0.6415 -4.4883 26 8 4.2522 0.0047 -4.7568 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1766 0.0902 34 1 4.5352 -3.3008 0.6500 35 1 5.1824 1.0182 -2.9059 36 1 4.4629 2.4253 -2.0867 37 1 -1.0267 2.0225 -5.5818 38 1 -1.0081 0.7536 -7.6794 39 1 2.9449 -0.6412 -6.8770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841684035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:04 Heat of formation + Delta-G solvation = 51.472502 kcal Electronic energy + Delta-G solvation = -27711.377507 eV Core-core repulsion = 23683.461374 eV Total energy + Delta-G solvation = -4027.916133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07191 -38.65407 -37.63035 -37.38587 -36.56102 -35.66398 -33.39976 -31.78191 -31.50014 -30.75019 -29.12083 -26.66168 -25.72680 -25.21033 -24.20927 -22.84118 -22.31255 -21.07059 -19.49186 -18.90297 -17.01239 -16.77523 -16.23621 -16.06485 -15.68329 -15.49641 -15.22841 -15.08720 -14.78522 -14.30723 -14.20110 -13.96740 -13.42883 -13.25404 -13.07903 -13.02948 -12.74258 -12.43697 -12.27750 -11.92385 -11.76418 -11.56491 -11.32292 -11.26827 -11.12290 -10.73004 -10.61683 -10.38742 -9.91477 -9.85248 -9.80489 -9.60612 -9.46378 -8.85538 -8.62352 -8.24810 -7.25739 -6.05797 -3.48035 -0.04097 0.56574 1.78076 1.85088 2.34238 2.63538 3.26738 3.41584 3.43422 3.68041 3.80481 4.03193 4.40136 4.44374 4.53778 4.63373 4.72944 4.90917 5.02285 5.29785 5.36910 5.51116 5.63432 5.71776 5.76506 5.80149 5.81830 5.95787 5.96892 6.01014 6.03342 6.12592 6.21743 6.23403 6.36563 6.58916 6.67084 7.80193 7.90527 8.01700 8.25426 8.51321 8.80572 9.59042 9.82862 11.08542 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003898 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.999518 B = 7180.736394 C = 7818.050879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.563 5.563 6 C -0.274 4.274 7 H 0.079 0.921 8 C 0.057 3.943 9 N -0.877 5.877 10 Si 0.874 3.126 11 H -0.283 1.283 12 H -0.298 1.298 13 H -0.268 1.268 14 C 0.339 3.661 15 N -0.437 5.437 16 N 0.100 4.900 17 N -0.242 5.242 18 C 0.081 3.919 19 C -0.071 4.071 20 C -0.080 4.080 21 C -0.037 4.037 22 Cl -0.059 7.059 23 C -0.038 4.038 24 C -0.147 4.147 25 C 0.527 3.473 26 O -0.494 6.494 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 11.048 -10.503 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C -0.040 4.040 4 C -0.003 4.003 5 N -0.282 5.282 6 C -0.402 4.402 7 H 0.097 0.903 8 C -0.146 4.146 9 N -0.516 5.516 10 Si 0.703 3.297 11 H -0.211 1.211 12 H -0.226 1.226 13 H -0.192 1.192 14 C 0.131 3.869 15 N -0.271 5.271 16 N 0.113 4.887 17 N -0.133 5.133 18 C -0.029 4.029 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.066 4.066 22 Cl -0.030 7.030 23 C -0.058 4.058 24 C -0.158 4.158 25 C 0.315 3.685 26 O -0.365 6.365 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.546 10.900 -9.764 16.947 hybrid contribution 0.484 -0.452 -0.118 0.673 sum -8.061 10.448 -9.883 16.487 Atomic orbital electron populations 1.22613 0.83642 1.01690 0.98442 1.88272 1.17062 1.26527 1.94898 1.23268 0.96391 0.85399 0.98966 1.21624 0.91295 0.97026 0.90307 1.44708 1.71420 1.04790 1.07259 1.18577 1.41167 0.79144 1.01309 0.90292 1.25236 0.97204 0.94861 0.97327 1.69916 1.42809 1.09004 1.29833 0.87018 0.81190 0.79490 0.81989 1.21090 1.22621 1.19248 1.21504 0.85033 0.95855 0.84488 1.54138 1.14252 1.38506 1.20206 1.79890 0.88947 1.03840 1.15976 1.74026 1.16501 1.19453 1.03290 1.19759 0.94360 0.95282 0.93537 1.20870 0.97226 0.98932 0.92328 1.21142 0.97283 0.94939 0.96650 1.20920 0.96209 0.99194 0.90278 1.98386 1.98607 1.74117 1.31851 1.20932 0.97758 0.96038 0.91102 1.20688 0.95871 1.01734 0.97518 1.18715 0.87696 0.80015 0.82035 1.90891 1.31555 1.40127 1.73893 0.90558 0.95416 0.95180 0.95149 0.92468 0.91255 0.91825 0.92541 0.87193 0.89754 0.82888 0.83562 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 101.05 1.11 1.70 16 2 O -0.35 -7.87 10.18 -35.23 -0.36 -8.23 16 3 C 0.04 0.75 6.28 37.16 0.23 0.98 16 4 C 0.12 2.50 4.99 -4.04 -0.02 2.48 16 5 N -0.56 -12.70 2.32 -176.95 -0.41 -13.11 16 6 C -0.27 -7.52 9.46 -15.06 -0.14 -7.66 16 7 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.06 1.61 5.27 -17.43 -0.09 1.52 16 9 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 10 Si 0.87 21.29 25.13 -169.99 -4.27 17.02 16 11 H -0.28 -6.73 6.65 56.52 0.38 -6.36 16 12 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 14 C 0.34 6.45 6.50 -63.74 -0.41 6.03 16 15 N -0.44 -8.28 3.76 -64.50 -0.24 -8.52 16 16 N 0.10 1.74 10.57 60.35 0.64 2.38 16 17 N -0.24 -3.84 11.61 32.27 0.37 -3.47 16 18 C 0.08 1.19 6.72 -84.50 -0.57 0.63 16 19 C -0.07 -0.76 10.02 -39.25 -0.39 -1.16 16 20 C -0.08 -0.77 9.78 -39.53 -0.39 -1.16 16 21 C -0.04 -0.43 6.32 -39.43 -0.25 -0.68 16 22 Cl -0.06 -0.61 28.94 -51.86 -1.50 -2.11 16 23 C -0.04 -0.55 9.43 -39.30 -0.37 -0.92 16 24 C -0.15 -2.43 5.90 -104.77 -0.62 -3.05 16 25 C 0.53 10.38 7.76 -12.39 -0.10 10.28 16 26 O -0.49 -10.95 16.14 5.15 0.08 -10.87 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.05 5.80 -51.93 -0.30 0.75 16 32 H 0.07 1.58 3.24 -51.93 -0.17 1.42 16 33 H 0.06 1.05 7.84 -51.93 -0.41 0.65 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.11 2.18 7.10 -51.93 -0.37 1.81 16 36 H 0.08 1.29 7.79 -51.93 -0.40 0.88 16 37 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.15 2.19 7.81 -52.48 -0.41 1.78 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -32.89 347.55 -5.86 -38.75 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.18 Total: -0.23 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -2.00 Total: 8.99 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 1.14 Total: -48.57 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.28 Total: -19.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.27 Total: 17.02 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.89 -5.86 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841684035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.218 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds