Wall clock time and date at job start Tue Mar 31 2020 20:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99893 * 2 1 4 4 C 1.53001 * 109.47443 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46744 * 65.00078 * 4 3 2 6 6 C 1.36933 * 120.00118 * 270.00212 * 5 4 3 7 7 H 1.07998 * 120.00069 * 143.93181 * 6 5 4 8 8 C 1.38808 * 120.00095 * 323.92523 * 6 5 4 9 9 N 1.31625 * 120.00025 * 155.52652 * 8 6 5 10 10 Si 1.86806 * 120.00154 * 335.53200 * 8 6 5 11 11 H 1.48503 * 109.47037 * 95.57299 * 10 8 6 12 12 H 1.48493 * 109.47088 * 215.57320 * 10 8 6 13 13 H 1.48500 * 109.47110 * 335.57443 * 10 8 6 14 14 C 1.46505 * 119.99924 * 90.00368 * 5 4 3 15 15 N 1.46502 * 109.47050 * 258.88086 * 14 5 4 16 16 N 1.39729 * 119.96134 * 75.14409 * 15 14 5 17 17 N 1.28353 * 122.95592 * 179.97438 * 16 15 14 18 18 C 1.35631 * 121.97015 * 0.02562 * 17 16 15 19 19 C 1.39740 * 121.31448 * 179.97438 * 18 17 16 20 20 C 1.37609 * 119.75982 * 180.02562 * 19 18 17 21 21 C 1.38992 * 120.79372 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.74534 * 180.02562 * 21 20 19 23 23 C 1.37880 * 120.50552 * 0.06067 * 21 20 19 24 24 C 1.39351 * 119.55829 * 359.91851 * 23 21 20 25 25 C 1.35398 * 119.95418 * 255.39503 * 15 14 5 26 26 O 1.21738 * 121.31827 * 359.75380 * 25 15 14 27 27 H 1.08998 * 109.46687 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47080 * 299.99572 * 1 2 3 29 29 H 1.08998 * 109.47066 * 60.00036 * 1 2 3 30 30 H 1.08997 * 109.47023 * 60.00120 * 3 2 1 31 31 H 1.09004 * 109.47581 * 300.00575 * 3 2 1 32 32 H 1.09002 * 109.46974 * 305.00184 * 4 3 2 33 33 H 1.08994 * 109.47347 * 185.00199 * 4 3 2 34 34 H 0.97005 * 119.99857 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47019 * 138.87538 * 14 5 4 36 36 H 1.09000 * 109.46854 * 18.87594 * 14 5 4 37 37 H 1.08004 * 120.11862 * 0.04307 * 19 18 17 38 38 H 1.07999 * 119.60343 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.21458 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0978 -0.7973 -1.3345 7 1 3.8463 -1.3064 -2.2532 8 6 4.5441 -1.5230 -0.2387 9 7 4.2237 -2.7937 -0.1161 10 14 5.5993 -0.6962 1.0623 11 1 4.7368 -0.2366 2.1805 12 1 6.6013 -1.6644 1.5757 13 1 6.2984 0.4699 0.4650 14 6 4.2883 1.4000 -2.4130 15 7 3.1633 1.3711 -3.3511 16 7 2.0004 2.0923 -3.0685 17 7 0.9816 2.1081 -3.8490 18 6 0.9605 1.4180 -5.0164 19 6 -0.1564 1.4444 -5.8558 20 6 -0.1434 0.7317 -7.0328 21 6 0.9694 -0.0161 -7.3996 22 17 0.9566 -0.9045 -8.8910 23 6 2.0829 -0.0583 -6.5876 24 6 2.0892 0.6571 -5.3918 25 6 3.2500 0.6415 -4.4883 26 8 4.2522 0.0047 -4.7568 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1766 0.0902 34 1 4.5352 -3.3008 0.6500 35 1 5.1824 1.0182 -2.9059 36 1 4.4629 2.4253 -2.0867 37 1 -1.0267 2.0225 -5.5818 38 1 -1.0081 0.7536 -7.6794 39 1 2.9449 -0.6412 -6.8770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841684035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:03 Heat of formation + Delta-G solvation = 27.406023 kcal Electronic energy + Delta-G solvation = -27712.421108 eV Core-core repulsion = 23683.461374 eV Total energy + Delta-G solvation = -4028.959734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.37239 -39.92391 -39.07029 -38.81239 -37.65649 -37.19752 -34.93308 -33.61722 -32.73052 -31.93775 -30.65169 -28.28019 -27.21534 -26.47255 -25.64668 -24.39617 -23.49062 -22.74289 -20.72827 -20.18590 -18.77105 -18.26105 -17.81968 -17.31326 -17.25003 -16.95796 -16.56154 -16.34276 -16.28873 -15.87557 -15.47268 -15.29099 -14.85759 -14.84186 -14.46988 -14.33667 -14.15050 -13.87487 -13.65248 -13.31649 -13.18851 -13.01176 -12.79964 -12.56084 -12.38419 -12.24745 -12.16781 -11.84630 -11.75652 -11.49037 -11.30828 -11.09754 -10.61938 -10.48710 -10.31672 -9.52879 -9.10836 -8.18492 -5.59947 -1.23155 -0.53403 0.62580 0.78414 0.98325 1.33394 1.39789 1.45013 1.54380 2.43171 2.44970 2.52531 2.89602 2.96729 3.10847 3.31796 3.37282 3.65486 3.78218 3.96383 4.18408 4.31218 4.40493 4.42612 4.51572 4.53415 4.55446 4.57278 4.64564 4.69125 4.71548 4.81233 4.83498 4.95418 5.09840 5.15227 5.33505 5.86932 6.12324 6.43332 6.56058 6.86079 7.16158 7.53635 7.84861 9.01457 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003898 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.999518 B = 7180.736394 C = 7818.050879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.401 6.401 3 C 0.038 3.962 4 C 0.116 3.884 5 N -0.579 5.579 6 C -0.251 4.251 7 H 0.016 0.984 8 C -0.005 4.005 9 N -0.941 5.941 10 Si 0.947 3.053 11 H -0.271 1.271 12 H -0.312 1.312 13 H -0.243 1.243 14 C 0.344 3.656 15 N -0.448 5.448 16 N 0.088 4.912 17 N -0.219 5.219 18 C 0.055 3.945 19 C -0.046 4.046 20 C -0.060 4.060 21 C -0.024 4.024 22 Cl -0.041 7.041 23 C -0.058 4.058 24 C -0.166 4.166 25 C 0.514 3.486 26 O -0.540 6.540 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.194 0.806 38 H 0.195 0.805 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 14.426 -11.428 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.320 6.320 3 C -0.040 4.040 4 C -0.008 4.008 5 N -0.300 5.300 6 C -0.381 4.381 7 H 0.033 0.967 8 C -0.202 4.202 9 N -0.583 5.583 10 Si 0.774 3.226 11 H -0.198 1.198 12 H -0.241 1.241 13 H -0.166 1.166 14 C 0.138 3.862 15 N -0.279 5.279 16 N 0.101 4.899 17 N -0.110 5.110 18 C -0.055 4.055 19 C -0.068 4.068 20 C -0.080 4.080 21 C -0.053 4.053 22 Cl -0.012 7.012 23 C -0.078 4.078 24 C -0.177 4.177 25 C 0.304 3.696 26 O -0.415 6.415 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.212 0.788 38 H 0.212 0.788 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.279 14.362 -10.707 21.169 hybrid contribution 1.007 -1.451 -0.230 1.781 sum -10.272 12.911 -10.937 19.794 Atomic orbital electron populations 1.22714 0.81615 1.01955 1.00094 1.88208 1.19613 1.28878 1.95284 1.23346 0.95501 0.84472 1.00678 1.21810 0.92557 0.98452 0.88002 1.44635 1.73214 1.03072 1.09100 1.18105 1.39587 0.81640 0.98754 0.96660 1.25928 0.98662 0.95362 1.00258 1.70076 1.45588 1.11258 1.31356 0.85847 0.78838 0.78623 0.79274 1.19766 1.24082 1.16596 1.21637 0.84302 0.97473 0.82824 1.53371 1.15284 1.39234 1.19994 1.79889 0.88821 1.04519 1.16628 1.73867 1.15631 1.18198 1.03267 1.20046 0.95380 0.96145 0.93975 1.21397 0.96535 0.97723 0.91171 1.21685 0.97517 0.92386 0.96369 1.21112 0.95696 0.98395 0.90086 1.98405 1.98526 1.73722 1.30535 1.20905 0.98865 0.96651 0.91396 1.20603 0.95378 1.03699 0.98008 1.19222 0.88307 0.79415 0.82693 1.90847 1.33455 1.42130 1.75032 0.91158 0.92546 0.94486 0.92045 0.91781 0.93684 0.87183 0.92986 0.89255 0.85147 0.78841 0.78826 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.01 113.37 1.25 2.37 16 2 O -0.40 -18.05 10.18 -148.98 -1.52 -19.56 16 3 C 0.04 1.41 6.28 71.98 0.45 1.86 16 4 C 0.12 4.52 4.99 86.38 0.43 4.95 16 5 N -0.58 -26.43 2.32 -713.74 -1.65 -28.09 16 6 C -0.25 -14.61 9.46 84.03 0.80 -13.81 16 7 H 0.02 1.07 8.06 -2.91 -0.02 1.05 16 8 C 0.00 -0.28 5.27 84.86 0.45 0.17 16 9 N -0.94 -60.84 13.97 21.65 0.30 -60.54 16 10 Si 0.95 45.41 25.13 68.60 1.72 47.13 16 11 H -0.27 -12.30 6.65 99.48 0.66 -11.63 16 12 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 13 H -0.24 -10.48 7.11 99.48 0.71 -9.78 16 14 C 0.34 13.25 6.50 170.96 1.11 14.37 16 15 N -0.45 -17.31 3.76 -475.82 -1.79 -19.10 16 16 N 0.09 2.95 10.57 37.02 0.39 3.34 16 17 N -0.22 -6.52 11.61 -51.81 -0.60 -7.12 16 18 C 0.05 1.51 6.72 39.65 0.27 1.77 16 19 C -0.05 -0.77 10.02 22.48 0.23 -0.55 16 20 C -0.06 -0.86 9.78 22.30 0.22 -0.65 16 21 C -0.02 -0.49 6.32 22.37 0.14 -0.35 16 22 Cl -0.04 -0.75 28.94 -2.72 -0.08 -0.83 16 23 C -0.06 -1.66 9.43 22.45 0.21 -1.45 16 24 C -0.17 -5.55 5.90 -19.96 -0.12 -5.67 16 25 C 0.51 21.36 7.76 86.47 0.67 22.03 16 26 O -0.54 -26.10 16.14 -4.47 -0.07 -26.17 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.22 5.80 -2.39 -0.01 2.21 16 32 H 0.05 1.99 3.24 -2.39 -0.01 1.98 16 33 H 0.11 3.21 7.84 -2.39 -0.02 3.19 16 34 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 35 H 0.09 3.74 7.10 -2.39 -0.02 3.73 16 36 H 0.13 3.71 7.79 -2.39 -0.02 3.69 16 37 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.14 4.28 7.81 -2.91 -0.02 4.26 16 Total: -1.00 -80.79 347.55 3.87 -76.92 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.06 Total: 8.97 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 6.10 Total: 25.05 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -3.35 Total: -111.51 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.59 Total: -45.73 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.72 Total: 47.13 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -80.79 3.87 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841684035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.329 kcal (2) G-P(sol) polarization free energy of solvation -80.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds