Wall clock time and date at job start Tue Mar 31 2020 21:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00664 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34714 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34486 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 O 1.45194 * 109.47495 * 120.00093 * 2 1 3 13 13 C 1.34704 * 117.00393 * 270.00496 * 12 2 1 14 14 O 1.21477 * 120.00061 * 359.97438 * 13 12 2 15 15 C 1.47725 * 120.00294 * 179.97438 * 13 12 2 16 16 C 1.39624 * 120.15122 * 359.72235 * 15 13 12 17 17 C 1.37946 * 119.85057 * 179.72366 * 16 15 13 18 18 C 1.38371 * 120.14712 * 0.55177 * 17 16 15 19 19 S 1.76196 * 119.84603 * 179.74427 * 18 17 16 20 20 O 1.42107 * 104.27963 * 26.05220 * 19 18 17 21 21 O 1.42098 * 104.27870 * 153.90710 * 19 18 17 22 22 C 1.81394 * 104.45011 * 269.97883 * 19 18 17 23 23 C 1.53779 * 113.61733 * 284.13668 * 22 19 18 24 24 C 1.53953 * 87.02316 * 220.04796 * 23 22 19 25 25 C 1.53775 * 87.11055 * 25.36223 * 24 23 22 26 26 C 1.38366 * 120.30241 * 359.72000 * 18 17 16 27 27 C 1.37945 * 120.15096 * 0.02562 * 26 18 17 28 28 H 1.09006 * 109.46600 * 174.96748 * 1 2 3 29 29 H 1.08998 * 109.47127 * 294.96848 * 1 2 3 30 30 H 1.08996 * 109.47228 * 54.96848 * 1 2 3 31 31 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 32 32 H 1.08011 * 120.07302 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.92713 * 180.25864 * 17 16 15 34 34 H 1.09004 * 112.84809 * 55.33655 * 22 19 18 35 35 H 1.08999 * 113.61173 * 334.57350 * 23 22 19 36 36 H 1.09008 * 113.61471 * 105.46433 * 23 22 19 37 37 H 1.08998 * 113.53777 * 270.81240 * 24 23 22 38 38 H 1.09001 * 113.66765 * 139.93227 * 24 23 22 39 39 H 1.09001 * 113.61558 * 220.09237 * 25 24 23 40 40 H 1.08997 * 113.69365 * 89.19933 * 25 24 23 41 41 H 1.07997 * 119.92490 * 180.02562 * 26 18 17 42 42 H 1.08001 * 120.07278 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2152 0.9978 -2.5939 8 14 2.2878 -1.1283 -4.0101 9 1 1.2111 -2.0864 -4.3680 10 1 2.5007 -0.1807 -5.1336 11 1 3.5451 -1.8727 -3.7455 12 8 2.0141 -0.6845 1.1855 13 6 2.2179 0.0666 2.2850 14 8 1.9977 1.2608 2.2542 15 6 2.7092 -0.5620 3.5283 16 6 2.9578 -1.9353 3.5690 17 6 3.4219 -2.5149 4.7315 18 6 3.6303 -1.7404 5.8591 19 16 4.2168 -2.4901 7.3418 20 8 4.9253 -3.6389 6.8972 21 8 4.8830 -1.4382 8.0266 22 6 2.7114 -2.9749 8.2301 23 6 1.9849 -1.7967 8.8999 24 6 1.7305 -2.7361 10.0929 25 6 2.9780 -3.5157 9.6448 26 6 3.3805 -0.3798 5.8274 27 6 2.9212 0.2135 4.6699 28 1 -0.3633 -1.0238 -0.0902 29 1 -0.3633 0.4338 0.9316 30 1 -0.3633 0.5899 -0.8415 31 1 1.0462 1.3718 -3.4728 32 1 2.7910 -2.5418 2.6909 33 1 3.6186 -3.5764 4.7632 34 1 2.0557 -3.6113 7.6358 35 1 2.6394 -0.9578 9.1365 36 1 1.0758 -1.4923 8.3810 37 1 0.8055 -3.3064 10.0083 38 1 1.8433 -2.2519 11.0629 39 1 2.8696 -4.5973 9.7264 40 1 3.9052 -3.1489 10.0849 41 1 3.5456 0.2190 6.7109 42 1 2.7263 1.2755 4.6467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842311306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:36 Heat of formation + Delta-G solvation = -111.046957 kcal Electronic energy + Delta-G solvation = -26390.541689 eV Core-core repulsion = 22428.869482 eV Total energy + Delta-G solvation = -3961.672207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.09993 -39.07702 -38.62820 -37.34539 -36.21588 -35.83858 -33.32705 -31.81317 -31.25888 -29.67690 -26.84948 -26.40045 -25.40175 -24.84895 -23.00165 -21.74129 -20.55081 -19.96511 -19.22867 -18.31453 -17.64244 -17.13030 -16.77138 -16.29667 -15.95088 -15.64781 -15.19776 -14.92493 -14.75503 -14.49197 -14.13322 -13.73867 -13.60429 -13.29674 -13.14931 -13.03119 -12.81673 -12.66878 -12.34019 -12.31446 -12.24613 -12.03254 -11.41028 -11.39074 -11.25197 -11.23093 -11.12149 -11.07700 -10.90363 -10.53755 -10.48766 -10.37659 -9.92525 -9.65056 -9.50494 -9.24480 -9.02803 -8.56567 -6.25966 -4.31590 -0.28171 0.28406 1.12724 2.47869 2.66325 3.21726 3.25109 3.28696 3.36966 3.41829 3.51824 3.69129 3.79645 4.09047 4.13111 4.24992 4.27808 4.57945 4.68730 4.90679 4.98058 5.07737 5.08833 5.12432 5.13394 5.30197 5.33539 5.35402 5.40015 5.45319 5.71042 5.72176 5.87049 5.95327 6.21094 6.50473 6.57120 6.74096 6.75802 6.98345 7.47667 7.56218 7.76632 8.01407 8.44980 8.78469 9.33510 10.83377 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.002334 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.298210 B =11994.115786 C =12365.353787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 H 0.054 0.946 4 C -0.525 4.525 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.347 6.347 13 C 0.489 3.511 14 O -0.507 6.507 15 C -0.054 4.054 16 C -0.084 4.084 17 C -0.039 4.039 18 C -0.640 4.640 19 S 2.496 3.504 20 O -0.936 6.936 21 O -0.933 6.933 22 C -0.598 4.598 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.114 4.114 26 C -0.036 4.036 27 C -0.084 4.084 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.147 0.853 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -8.237 24.849 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.563 4.563 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.738 3.262 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.263 6.263 13 C 0.332 3.668 14 O -0.397 6.397 15 C -0.056 4.056 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.727 4.727 19 S 2.678 3.322 20 O -0.933 6.933 21 O -0.930 6.930 22 C -0.708 4.708 23 C -0.154 4.154 24 C -0.166 4.166 25 C -0.153 4.153 26 C -0.055 4.055 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.181 -7.855 24.830 26.070 hybrid contribution -0.664 -0.136 -1.573 1.713 sum 0.516 -7.990 23.257 24.597 Atomic orbital electron populations 1.22098 0.97588 1.00725 1.00228 1.20738 0.91196 0.94444 0.77438 0.92838 1.20960 1.37211 1.09224 0.88865 0.91204 1.24909 0.94947 0.94875 0.99133 1.69957 1.42020 1.15884 1.24605 0.86288 0.79122 0.79430 0.81311 1.20211 1.20980 1.19616 1.86539 1.75515 1.43212 1.21062 1.21003 0.75505 0.85404 0.84855 1.90792 1.48160 1.16063 1.84705 1.19852 0.98765 0.94421 0.92538 1.21740 0.95608 0.94067 0.98863 1.20940 0.93333 1.00198 0.91263 1.30644 1.17804 1.04799 1.19441 1.05492 0.76977 0.74908 0.74838 1.93574 1.68820 1.50599 1.80290 1.93570 1.70170 1.55444 1.73834 1.31706 1.20301 1.09688 1.09130 1.22752 1.01314 0.94626 0.96739 1.22785 0.97845 0.97586 0.98371 1.22664 1.00364 1.02070 0.90214 1.20832 0.93454 0.92447 0.98744 1.21441 0.96574 1.01108 0.91124 0.93946 0.96220 0.89595 0.92289 0.82949 0.83515 0.82551 0.87806 0.89222 0.89239 0.90223 0.89142 0.88751 0.83525 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.32 37.16 0.35 -3.28 16 2 C 0.21 5.63 2.44 -27.88 -0.07 5.56 16 3 H 0.05 1.57 7.14 -51.93 -0.37 1.20 16 4 C -0.52 -14.47 8.83 -34.44 -0.30 -14.78 16 5 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 6 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 7 N -0.89 -25.08 11.98 55.43 0.66 -24.42 16 8 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 O -0.35 -8.04 9.12 -40.50 -0.37 -8.41 16 13 C 0.49 10.20 7.87 34.61 0.27 10.47 16 14 O -0.51 -11.77 15.61 -19.25 -0.30 -12.07 16 15 C -0.05 -0.88 5.87 -104.98 -0.62 -1.50 16 16 C -0.08 -1.17 9.62 -39.17 -0.38 -1.54 16 17 C -0.04 -0.45 9.45 -39.64 -0.37 -0.82 16 18 C -0.64 -7.05 5.66 -39.49 -0.22 -7.28 16 19 S 2.50 23.85 5.07 -107.50 -0.54 23.31 16 20 O -0.94 -11.69 17.11 -57.54 -0.98 -12.68 16 21 O -0.93 -10.91 16.47 -57.54 -0.95 -11.86 16 22 C -0.60 -3.52 4.31 -25.92 -0.11 -3.63 16 23 C -0.12 -0.61 7.66 -25.83 -0.20 -0.80 16 24 C -0.13 -0.55 8.09 -25.83 -0.21 -0.76 16 25 C -0.11 -0.57 7.67 -25.92 -0.20 -0.77 16 26 C -0.04 -0.40 9.45 -39.64 -0.37 -0.78 16 27 C -0.08 -1.14 9.60 -39.17 -0.38 -1.51 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.23 6.84 -51.93 -0.36 1.87 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.15 2.06 7.61 -52.48 -0.40 1.66 16 33 H 0.15 1.37 7.56 -52.49 -0.40 0.97 16 34 H 0.16 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.53 7.57 -51.93 -0.39 0.14 16 36 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 41 H 0.15 1.26 7.56 -52.49 -0.40 0.86 16 42 H 0.15 1.91 7.65 -52.49 -0.40 1.50 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -34.64 370.50 -10.47 -45.11 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.64 Total: -0.64 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.91 Total: -19.77 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.66 Total: -24.42 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -2.60 Total: -45.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 23.85 SS G_CDS: -0.54 Total: 23.31 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.64 -10.47 -45.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.936 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds