Wall clock time and date at job start Tue Mar 31 2020 21:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39023 * 119.99925 * 2 1 4 4 N 1.32341 * 119.64195 * 0.02562 * 3 2 1 5 5 C 1.31886 * 121.95847 * 179.97438 * 4 3 2 6 6 C 1.37997 * 121.00209 * 359.72059 * 5 4 3 7 7 C 1.40011 * 119.16560 * 0.55733 * 6 5 4 8 8 C 1.48066 * 120.88361 * 179.73055 * 7 6 5 9 9 O 1.21427 * 120.00001 * 179.72425 * 8 7 6 10 10 O 1.34669 * 119.99936 * 359.43986 * 8 7 6 11 11 C 1.45201 * 116.99936 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47187 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99963 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00074 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47368 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99735 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00064 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99898 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00046 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 89.99900 * 20 18 16 22 22 H 1.48508 * 109.47110 * 209.99777 * 20 18 16 23 23 H 1.48497 * 109.47125 * 329.99835 * 20 18 16 24 24 C 1.39081 * 119.64202 * 180.02562 * 3 2 1 25 25 N 1.48018 * 120.53433 * 0.03743 * 24 3 2 26 26 O 1.21797 * 120.00114 * 269.97921 * 25 24 3 27 27 O 1.21798 * 119.99645 * 89.98264 * 25 24 3 28 28 H 1.09001 * 109.47047 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.47046 * 60.00335 * 1 2 3 30 30 H 1.09000 * 109.46884 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00095 * 179.97438 * 2 1 3 32 32 H 1.07996 * 119.50006 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.41435 * 180.28816 * 6 5 4 34 34 H 1.09001 * 109.47012 * 300.00488 * 11 10 8 35 35 H 1.09001 * 109.47271 * 60.00220 * 11 10 8 36 36 H 0.96997 * 120.00313 * 0.02562 * 14 12 11 37 37 H 1.09009 * 109.47184 * 300.00009 * 15 14 12 38 38 H 1.08997 * 109.47254 * 60.00492 * 15 14 12 39 39 H 0.97001 * 120.00065 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4913 2.3459 0.0005 5 6 2.1040 3.5138 0.0010 6 6 3.4817 3.5937 0.0068 7 6 4.2337 2.4127 0.0003 8 6 5.7137 2.4542 0.0002 9 8 6.3501 1.4200 -0.0004 10 8 6.3542 3.6388 -0.0049 11 6 7.8058 3.6034 -0.0053 12 6 8.3426 5.0115 -0.0107 13 8 7.5772 5.9523 -0.0145 14 7 9.6733 5.2254 -0.0114 15 6 10.1952 6.5942 -0.0173 16 6 11.7018 6.5575 -0.0175 17 1 12.2188 5.6094 -0.0132 18 6 12.4200 7.7344 -0.0231 19 7 13.7347 7.7023 -0.0228 20 14 11.5257 9.3744 -0.0298 21 1 11.2897 9.8151 1.3686 22 1 12.3529 10.3864 -0.7348 23 1 10.2238 9.2254 -0.7284 24 6 3.5510 1.1953 -0.0005 25 7 4.2950 -0.0843 -0.0019 26 8 4.6019 -0.6115 1.0523 27 8 4.6004 -0.6099 -1.0574 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 1.5187 4.4214 0.0010 33 1 3.9736 4.5552 0.0119 34 1 8.1567 3.0845 0.8867 35 1 8.1562 3.0772 -0.8932 36 1 10.2855 4.4730 -0.0088 37 1 9.8446 7.1130 -0.9096 38 1 9.8444 7.1206 0.8704 39 1 14.2401 8.5303 -0.0264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848789744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:24 Heat of formation + Delta-G solvation = -61.117251 kcal Electronic energy + Delta-G solvation = -28250.975226 eV Core-core repulsion = 23777.467670 eV Total energy + Delta-G solvation = -4473.507556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66217 -41.23003 -40.56970 -39.03282 -36.90179 -36.72260 -36.68450 -34.48873 -33.86067 -32.50436 -31.69313 -29.75457 -27.76850 -27.34571 -26.96453 -24.75335 -23.43370 -22.33303 -21.57364 -20.28138 -19.89667 -19.25232 -19.00098 -18.41563 -17.78310 -17.51682 -17.08219 -16.79305 -16.56374 -15.98873 -15.74571 -15.40698 -15.15006 -15.09896 -14.98052 -14.27100 -13.98901 -13.83440 -13.38347 -13.31278 -12.86157 -12.78287 -12.45135 -12.23213 -11.88121 -11.64399 -11.45455 -11.31003 -11.28607 -11.12528 -11.10627 -11.01526 -10.84191 -10.57081 -10.05699 -9.61187 -9.49932 -8.87653 -8.84362 -8.37501 -6.28641 -4.32362 -0.52654 0.19752 0.27454 0.95512 1.65319 1.84466 2.19067 2.79342 2.87699 3.20995 3.27636 3.34860 3.38736 3.53486 3.78777 3.91742 4.05997 4.26123 4.34848 4.53983 4.70605 4.86513 4.88710 4.96644 5.05099 5.06413 5.07276 5.16263 5.40101 5.74489 5.89792 6.07524 6.22306 6.63887 6.92980 6.94673 7.02450 7.04124 7.24555 7.33577 7.95264 8.33129 8.56747 8.71935 9.29684 10.83050 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002142 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.810644 B =13065.838794 C =14018.641216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.718 5.718 3 C 0.449 3.551 4 N -0.500 5.500 5 C 0.188 3.812 6 C -0.164 4.164 7 C 0.018 3.982 8 C 0.500 3.500 9 O -0.479 6.479 10 O -0.312 6.312 11 C 0.049 3.951 12 C 0.504 3.496 13 O -0.536 6.536 14 N -0.696 5.696 15 C 0.223 3.777 16 C -0.548 4.548 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.889 5.889 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.108 4.108 25 N 0.032 4.968 26 O -0.129 6.129 27 O -0.129 6.129 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.413 0.587 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.987 -13.713 0.055 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.349 5.349 3 C 0.210 3.790 4 N -0.219 5.219 5 C 0.028 3.972 6 C -0.186 4.186 7 C 0.008 3.992 8 C 0.342 3.658 9 O -0.366 6.366 10 O -0.226 6.226 11 C -0.028 4.028 12 C 0.287 3.713 13 O -0.414 6.414 14 N -0.347 5.347 15 C 0.101 3.899 16 C -0.586 4.586 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.526 5.526 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.197 4.197 25 N 0.563 4.437 26 O -0.352 6.352 27 O -0.352 6.352 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.249 0.751 32 H 0.206 0.794 33 H 0.194 0.806 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.234 0.766 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.627 -12.583 0.048 32.188 hybrid contribution 1.514 -0.169 0.021 1.524 sum -28.113 -12.752 0.069 30.870 Atomic orbital electron populations 1.21664 0.77002 1.02909 1.02988 1.44567 1.08199 1.03726 1.78372 1.17634 0.83632 0.88590 0.89103 1.67457 1.38446 0.96771 1.19233 1.23022 0.91888 0.94971 0.87311 1.22497 0.94849 0.98781 1.02520 1.18936 0.90952 0.91705 0.97612 1.20773 0.87970 0.82714 0.74355 1.90987 1.67753 1.34195 1.43698 1.86535 1.22441 1.30690 1.82903 1.23029 0.75972 0.98226 1.05608 1.19781 0.83808 0.89097 0.78619 1.90701 1.57078 1.43724 1.49905 1.46071 1.04608 1.11845 1.72130 1.19582 0.95051 0.78119 0.97139 1.21054 0.88168 0.95496 1.53888 0.90074 1.24790 0.94772 0.99237 0.93760 1.69872 1.05442 1.28340 1.48922 0.86813 0.80382 0.83366 0.79099 1.19768 1.20792 1.18502 1.21201 0.91325 0.84840 1.22371 1.43011 0.98948 1.01085 1.00650 1.94573 1.55550 1.64325 1.20761 1.94573 1.55621 1.64446 1.20588 0.91474 0.91463 0.90078 0.75126 0.79383 0.80582 0.87631 0.87621 0.76555 0.95333 0.95778 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 10.72 59.85 0.64 1.06 16 2 N -0.72 -5.16 5.85 -67.22 -0.39 -5.55 16 3 C 0.45 4.13 7.48 -155.07 -1.16 2.97 16 4 N -0.50 -3.91 9.53 -12.48 -0.12 -4.03 16 5 C 0.19 1.11 11.16 -17.62 -0.20 0.92 16 6 C -0.16 -1.29 9.70 -39.01 -0.38 -1.66 16 7 C 0.02 0.20 5.90 -104.70 -0.62 -0.42 16 8 C 0.50 6.81 7.92 34.76 0.28 7.08 16 9 O -0.48 -7.61 14.51 -24.33 -0.35 -7.96 16 10 O -0.31 -4.37 9.11 -47.09 -0.43 -4.80 16 11 C 0.05 0.67 5.95 36.00 0.21 0.88 16 12 C 0.50 9.01 7.91 -10.99 -0.09 8.92 16 13 O -0.54 -11.48 16.50 -14.11 -0.23 -11.72 16 14 N -0.70 -13.21 5.55 -61.47 -0.34 -13.55 16 15 C 0.22 5.22 4.50 -5.19 -0.02 5.19 16 16 C -0.55 -14.55 9.83 -34.44 -0.34 -14.89 16 17 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 20 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.26 -6.08 6.54 56.52 0.37 -5.72 16 24 C -0.11 -1.23 6.22 -79.13 -0.49 -1.72 16 25 N 0.03 0.43 1.73 34.36 0.06 0.49 16 26 O -0.13 -1.84 19.01 -32.27 -0.61 -2.45 16 27 O -0.13 -1.84 19.02 -32.23 -0.61 -2.45 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.41 2.88 8.06 -40.82 -0.33 2.55 16 32 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.18 1.22 7.71 -52.49 -0.40 0.82 16 34 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.11 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.40 6.57 8.32 -40.82 -0.34 6.23 16 37 H 0.03 0.70 7.20 -51.92 -0.37 0.33 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -35.29 359.52 -7.73 -43.02 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.95 Total: 2.17 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.26 Total: 10.40 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.02 Total: -47.72 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -2.24 Total: -29.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.29 -7.73 -43.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848789744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.096 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds