Wall clock time and date at job start Tue Mar 31 2020 21:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39023 * 119.99925 * 2 1 4 4 N 1.32341 * 119.64195 * 0.02562 * 3 2 1 5 5 C 1.31886 * 121.95847 * 179.97438 * 4 3 2 6 6 C 1.37997 * 121.00209 * 359.72059 * 5 4 3 7 7 C 1.40011 * 119.16560 * 0.55733 * 6 5 4 8 8 C 1.48066 * 120.88361 * 179.73055 * 7 6 5 9 9 O 1.21427 * 120.00001 * 179.72425 * 8 7 6 10 10 O 1.34669 * 119.99936 * 359.43986 * 8 7 6 11 11 C 1.45201 * 116.99936 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47187 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99963 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00074 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47368 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99735 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00064 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99898 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00046 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46995 * 89.99900 * 20 18 16 22 22 H 1.48508 * 109.47110 * 209.99777 * 20 18 16 23 23 H 1.48497 * 109.47125 * 329.99835 * 20 18 16 24 24 C 1.39081 * 119.64202 * 180.02562 * 3 2 1 25 25 N 1.48018 * 120.53433 * 0.03743 * 24 3 2 26 26 O 1.21797 * 120.00114 * 269.97921 * 25 24 3 27 27 O 1.21798 * 119.99645 * 89.98264 * 25 24 3 28 28 H 1.09001 * 109.47047 * 299.99858 * 1 2 3 29 29 H 1.08998 * 109.47046 * 60.00335 * 1 2 3 30 30 H 1.09000 * 109.46884 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00095 * 179.97438 * 2 1 3 32 32 H 1.07996 * 119.50006 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.41435 * 180.28816 * 6 5 4 34 34 H 1.09001 * 109.47012 * 300.00488 * 11 10 8 35 35 H 1.09001 * 109.47271 * 60.00220 * 11 10 8 36 36 H 0.96997 * 120.00313 * 0.02562 * 14 12 11 37 37 H 1.09009 * 109.47184 * 300.00009 * 15 14 12 38 38 H 1.08997 * 109.47254 * 60.00492 * 15 14 12 39 39 H 0.97001 * 120.00065 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4913 2.3459 0.0005 5 6 2.1040 3.5138 0.0010 6 6 3.4817 3.5937 0.0068 7 6 4.2337 2.4127 0.0003 8 6 5.7137 2.4542 0.0002 9 8 6.3501 1.4200 -0.0004 10 8 6.3542 3.6388 -0.0049 11 6 7.8058 3.6034 -0.0053 12 6 8.3426 5.0115 -0.0107 13 8 7.5772 5.9523 -0.0145 14 7 9.6733 5.2254 -0.0114 15 6 10.1952 6.5942 -0.0173 16 6 11.7018 6.5575 -0.0175 17 1 12.2188 5.6094 -0.0132 18 6 12.4200 7.7344 -0.0231 19 7 13.7347 7.7023 -0.0228 20 14 11.5257 9.3744 -0.0298 21 1 11.2897 9.8151 1.3686 22 1 12.3529 10.3864 -0.7348 23 1 10.2238 9.2254 -0.7284 24 6 3.5510 1.1953 -0.0005 25 7 4.2950 -0.0843 -0.0019 26 8 4.6019 -0.6115 1.0523 27 8 4.6004 -0.6099 -1.0574 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 1.5187 4.4214 0.0010 33 1 3.9736 4.5552 0.0119 34 1 8.1567 3.0845 0.8867 35 1 8.1562 3.0772 -0.8932 36 1 10.2855 4.4730 -0.0088 37 1 9.8446 7.1130 -0.9096 38 1 9.8444 7.1206 0.8704 39 1 14.2401 8.5303 -0.0264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848789744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:24 Heat of formation + Delta-G solvation = -85.484693 kcal Electronic energy + Delta-G solvation = -28252.031877 eV Core-core repulsion = 23777.467670 eV Total energy + Delta-G solvation = -4474.564207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.56107 -42.19740 -41.42318 -40.49034 -38.01745 -37.69848 -37.30695 -36.23739 -34.60595 -34.47468 -32.35144 -31.20485 -29.17982 -28.12368 -27.78502 -25.61819 -24.18861 -24.07806 -22.54327 -21.80468 -20.75491 -20.02613 -19.99431 -19.58031 -18.91735 -18.72472 -18.17768 -18.03596 -17.39235 -17.29936 -16.89909 -16.54427 -16.17530 -16.13941 -15.80092 -15.65101 -14.97793 -14.87144 -14.52350 -14.37816 -14.33149 -13.94432 -13.88306 -13.15938 -13.09558 -12.92309 -12.71043 -12.57616 -12.51746 -12.36454 -12.20452 -11.92980 -11.90576 -11.70519 -11.67934 -11.26875 -11.05079 -10.92703 -10.07609 -9.42137 -8.39979 -6.48286 -1.29355 -0.76713 -0.43228 0.09735 0.67048 0.91144 1.34502 1.37167 1.43968 1.49007 1.58971 2.15153 2.20177 2.28670 2.88728 2.94738 2.95428 3.11823 3.37391 3.52924 3.68551 3.90398 3.90495 4.05388 4.28263 4.54697 4.57648 4.66103 4.76149 4.84523 4.89459 4.99959 5.01606 5.22264 5.35600 5.51703 5.64540 5.95417 6.05952 6.27492 6.42499 6.51110 6.66523 7.07609 7.23036 8.74580 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002142 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.810644 B =13065.838794 C =14018.641216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.717 5.717 3 C 0.447 3.553 4 N -0.498 5.498 5 C 0.211 3.789 6 C -0.151 4.151 7 C -0.004 4.004 8 C 0.504 3.496 9 O -0.510 6.510 10 O -0.317 6.317 11 C 0.056 3.944 12 C 0.510 3.490 13 O -0.570 6.570 14 N -0.696 5.696 15 C 0.233 3.767 16 C -0.551 4.551 17 H 0.059 0.941 18 C 0.025 3.975 19 N -0.931 5.931 20 Si 0.940 3.060 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.255 1.255 24 C -0.136 4.136 25 N 0.039 4.961 26 O -0.150 6.150 27 O -0.151 6.151 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.411 0.589 32 H 0.238 0.762 33 H 0.189 0.811 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.413 0.587 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.974 -12.703 0.090 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.345 5.345 3 C 0.209 3.791 4 N -0.217 5.217 5 C 0.050 3.950 6 C -0.174 4.174 7 C -0.014 4.014 8 C 0.347 3.653 9 O -0.399 6.399 10 O -0.231 6.231 11 C -0.020 4.020 12 C 0.295 3.705 13 O -0.450 6.450 14 N -0.347 5.347 15 C 0.110 3.890 16 C -0.589 4.589 17 H 0.078 0.922 18 C -0.176 4.176 19 N -0.570 5.570 20 Si 0.763 3.237 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.179 1.179 24 C -0.226 4.226 25 N 0.566 4.434 26 O -0.372 6.372 27 O -0.372 6.372 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.247 0.753 32 H 0.254 0.746 33 H 0.206 0.794 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.249 0.751 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -32.637 -11.648 0.084 34.653 hybrid contribution 2.338 -0.486 0.010 2.387 sum -30.299 -12.133 0.094 32.638 Atomic orbital electron populations 1.21877 0.75140 1.04637 1.03151 1.44830 1.09372 1.03196 1.77132 1.17836 0.82924 0.89698 0.88662 1.67652 1.38011 0.96837 1.19182 1.23845 0.91379 0.95835 0.83929 1.22760 0.95581 0.97926 1.01087 1.18962 0.89576 0.92849 1.00052 1.21180 0.88958 0.81926 0.73211 1.90971 1.68589 1.34965 1.45331 1.86514 1.22361 1.31173 1.83041 1.22921 0.76271 0.95166 1.07678 1.20286 0.82830 0.90458 0.76933 1.90680 1.57732 1.45363 1.51246 1.45862 1.05642 1.10682 1.72555 1.19197 0.92991 0.80418 0.96404 1.21285 0.89873 0.94742 1.52963 0.92241 1.25638 0.95423 1.03006 0.93514 1.69986 1.07012 1.29509 1.50463 0.85826 0.79314 0.79065 0.79511 1.18910 1.20077 1.17930 1.21272 0.91957 0.83374 1.25967 1.43293 0.98405 1.01664 1.00028 1.94544 1.56325 1.65346 1.20972 1.94544 1.56413 1.65471 1.20804 0.91205 0.91199 0.87757 0.75307 0.74558 0.79379 0.85539 0.85564 0.75109 0.96168 0.96263 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.72 127.77 1.37 1.97 16 2 N -0.72 -9.41 5.85 -366.60 -2.15 -11.55 16 3 C 0.45 7.57 7.48 133.06 0.99 8.57 16 4 N -0.50 -6.30 9.53 -193.41 -1.84 -8.14 16 5 C 0.21 1.67 11.16 84.63 0.94 2.62 16 6 C -0.15 -1.96 9.70 22.64 0.22 -1.74 16 7 C 0.00 -0.10 5.90 -19.92 -0.12 -0.21 16 8 C 0.50 13.42 7.92 70.43 0.56 13.98 16 9 O -0.51 -16.25 14.51 24.97 0.36 -15.88 16 10 O -0.32 -8.47 9.11 -49.40 -0.45 -8.92 16 11 C 0.06 1.45 5.95 71.23 0.42 1.88 16 12 C 0.51 17.59 7.91 87.66 0.69 18.28 16 13 O -0.57 -23.76 16.50 15.76 0.26 -23.50 16 14 N -0.70 -25.85 5.55 -466.78 -2.59 -28.44 16 15 C 0.23 10.79 4.50 85.64 0.38 11.17 16 16 C -0.55 -29.40 9.83 25.60 0.25 -29.15 16 17 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 18 C 0.02 1.36 5.47 84.65 0.46 1.82 16 19 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 20 Si 0.94 42.44 27.47 68.60 1.88 44.33 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.26 -11.22 6.54 99.48 0.65 -10.57 16 24 C -0.14 -3.03 6.22 36.90 0.23 -2.80 16 25 N 0.04 1.05 1.73 -45.21 -0.08 0.98 16 26 O -0.15 -4.44 19.01 21.57 0.41 -4.03 16 27 O -0.15 -4.46 19.02 21.54 0.41 -4.05 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.41 5.57 8.06 -92.71 -0.75 4.82 16 32 H 0.24 -0.48 8.06 -2.91 -0.02 -0.51 16 33 H 0.19 2.02 7.71 -2.91 -0.02 2.00 16 34 H 0.13 2.80 8.14 -2.39 -0.02 2.79 16 35 H 0.13 2.81 8.13 -2.39 -0.02 2.79 16 36 H 0.41 13.25 8.32 -92.71 -0.77 12.48 16 37 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 38 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 39 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -77.83 359.52 2.51 -75.32 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.43 Total: 11.95 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 6.42 Total: 26.37 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -6.36 Total: -101.58 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: 0.99 Total: -56.38 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.33 kcal Total: -77.83 2.51 -75.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848789744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.163 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds