Wall clock time and date at job start Tue Mar 31 2020 20:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34227 * 117.00440 * 2 1 4 4 O 1.20823 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00337 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47084 * 54.99715 * 5 3 2 7 7 O 1.45196 * 109.47487 * 175.00017 * 5 3 2 8 8 C 1.34229 * 117.00136 * 270.00365 * 7 5 3 9 9 O 1.20819 * 119.99787 * 359.97438 * 8 7 5 10 10 C 1.50704 * 119.99980 * 179.97438 * 8 7 5 11 11 S 1.81002 * 109.46835 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99641 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00605 * 0.02562 * 12 11 10 14 14 C 1.38806 * 119.99813 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00099 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99816 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47249 * 90.00075 * 16 14 12 18 18 H 1.48505 * 109.47179 * 210.00069 * 16 14 12 19 19 H 1.48505 * 109.47316 * 329.99840 * 16 14 12 20 20 C 1.50706 * 109.47248 * 294.99992 * 5 3 2 21 21 C 1.38256 * 120.00110 * 265.00168 * 20 5 3 22 22 C 1.38215 * 119.99734 * 180.02562 * 21 20 5 23 23 C 1.38253 * 120.00294 * 359.97438 * 22 21 20 24 24 C 1.38212 * 119.99859 * 359.97438 * 23 22 21 25 25 C 1.50703 * 120.00209 * 179.97438 * 24 23 22 26 26 C 1.38217 * 119.99801 * 84.97345 * 20 5 3 27 27 C 1.50701 * 120.00007 * 0.02562 * 26 20 5 28 28 H 1.08991 * 109.47726 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 300.00053 * 1 2 3 30 30 H 1.09001 * 109.47280 * 59.99574 * 1 2 3 31 31 H 1.08996 * 109.47102 * 299.99940 * 10 8 7 32 32 H 1.09003 * 109.46920 * 60.00104 * 10 8 7 33 33 H 0.96994 * 120.00045 * 179.97438 * 15 14 12 34 34 H 1.07995 * 120.00047 * 0.26995 * 21 20 5 35 35 H 1.08000 * 119.99306 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00364 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.46904 * 89.99973 * 25 24 23 38 38 H 1.09001 * 109.47612 * 210.00253 * 25 24 23 39 39 H 1.09003 * 109.46981 * 330.00930 * 25 24 23 40 40 H 1.09001 * 109.47266 * 269.99835 * 27 26 20 41 41 H 1.08999 * 109.47130 * 29.99787 * 27 26 20 42 42 H 1.09004 * 109.47185 * 149.99795 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9603 0.7050 -0.8409 7 8 3.9784 2.6619 -0.1188 8 6 4.1572 3.1398 -1.3604 9 8 3.9759 2.4226 -2.3156 10 6 4.5842 4.5708 -1.5627 11 16 4.7393 4.9094 -3.3340 12 6 5.2351 6.5994 -3.2801 13 1 5.3526 7.0977 -2.3292 14 6 5.4748 7.2902 -4.4599 15 7 5.8457 8.5525 -4.4197 16 14 5.2710 6.4286 -6.1047 17 1 3.8747 6.5960 -6.5815 18 1 6.2064 7.0221 -7.0937 19 1 5.5701 4.9826 -5.9464 20 6 4.0989 0.7017 1.2886 21 6 4.3839 1.5382 2.3519 22 6 4.8729 1.0126 3.5329 23 6 5.0765 -0.3497 3.6514 24 6 4.7905 -1.1861 2.5889 25 6 5.0130 -2.6711 2.7177 26 6 4.3019 -0.6604 1.4072 27 6 3.9911 -1.5722 0.2483 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.8387 5.2372 -1.1289 32 1 5.5457 4.7353 -1.0762 33 1 6.0136 9.0352 -5.2441 34 1 4.2208 2.6019 2.2608 35 1 5.0959 1.6662 4.3633 36 1 5.4581 -0.7605 4.5744 37 1 4.1063 -3.1427 3.0966 38 1 5.2583 -3.0879 1.7409 39 1 5.8351 -2.8567 3.4089 40 1 2.9554 -1.9051 0.3155 41 1 4.1398 -1.0338 -0.6876 42 1 4.6536 -2.4374 0.2789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851194317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:23 Heat of formation + Delta-G solvation = -163.185295 kcal Electronic energy + Delta-G solvation = -26836.663469 eV Core-core repulsion = 22872.730374 eV Total energy + Delta-G solvation = -3963.933095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55532 -41.22723 -40.55723 -38.17299 -37.48566 -34.71663 -34.42829 -34.33447 -31.68044 -30.01081 -28.72753 -27.94048 -27.60456 -27.13811 -23.65553 -22.94234 -21.78758 -21.44204 -20.06541 -19.28662 -19.09870 -18.35462 -17.87739 -17.38513 -17.13388 -17.06315 -16.67339 -16.58012 -15.97012 -15.51697 -15.16227 -14.97218 -14.89606 -14.61276 -14.39077 -14.13929 -13.91352 -13.74394 -13.51646 -13.42754 -13.35991 -13.21085 -13.05542 -12.91671 -12.85679 -12.73145 -12.54286 -12.02094 -11.97802 -11.96293 -11.85002 -11.76490 -11.63184 -11.20766 -10.69020 -9.75440 -9.49778 -9.10898 -8.54679 -6.29220 0.12150 0.38749 0.51405 0.76549 0.85591 1.14923 1.30450 1.44096 1.51607 1.79077 2.21516 2.57602 2.70183 2.83303 3.16643 3.45058 3.46714 3.59961 3.89473 3.95900 4.01639 4.12308 4.20603 4.23373 4.25882 4.31217 4.44875 4.60922 4.66994 4.77408 4.77511 4.82629 4.91898 4.96446 5.00411 5.04811 5.20001 5.41566 5.48101 5.51960 5.65030 5.67620 6.02104 6.09397 6.26315 6.43040 6.88717 8.57757 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002845 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.534829 B = 9837.897674 C =10481.282218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.457 3.543 4 O -0.522 6.522 5 C 0.140 3.860 6 H 0.136 0.864 7 O -0.320 6.320 8 C 0.491 3.509 9 O -0.508 6.508 10 C -0.089 4.089 11 S -0.155 6.155 12 C -0.533 4.533 13 H 0.066 0.934 14 C 0.048 3.952 15 N -0.913 5.913 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.256 1.256 19 H -0.233 1.233 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.102 4.102 24 C -0.093 4.093 25 C -0.115 4.115 26 C -0.062 4.062 27 C -0.127 4.127 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.279 0.721 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -26.713 17.362 32.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.256 6.256 3 C 0.300 3.700 4 O -0.411 6.411 5 C 0.084 3.916 6 H 0.153 0.847 7 O -0.237 6.237 8 C 0.333 3.667 9 O -0.395 6.395 10 C -0.237 4.237 11 S 0.072 5.928 12 C -0.680 4.680 13 H 0.084 0.916 14 C -0.158 4.158 15 N -0.551 5.551 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.180 1.180 19 H -0.157 1.157 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.120 4.120 24 C -0.093 4.093 25 C -0.171 4.171 26 C -0.062 4.062 27 C -0.183 4.183 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.290 -27.183 16.105 32.035 hybrid contribution -0.198 1.801 0.162 1.819 sum -5.487 -25.381 16.267 30.642 Atomic orbital electron populations 1.23680 0.74068 1.06419 1.02516 1.86480 1.25330 1.30563 1.83209 1.23841 0.91732 0.82455 0.72003 1.90706 1.67120 1.37495 1.45798 1.20856 0.87660 0.81584 1.01516 0.84689 1.86636 1.77834 1.28360 1.30829 1.23141 0.72775 0.90026 0.80719 1.90648 1.47576 1.59247 1.42040 1.22948 1.07646 0.91501 1.01595 1.84599 1.90190 1.14236 1.03795 1.22390 1.53425 0.95116 0.97103 0.91620 1.25555 0.92832 0.94942 1.02490 1.70005 1.44935 1.09905 1.30245 0.85891 0.79723 0.81392 0.79519 1.18696 1.18017 1.15663 1.18955 1.05892 0.94429 0.92353 1.21128 0.98362 1.00051 0.93080 1.21384 0.99508 0.96335 0.97339 1.21504 0.98243 0.92963 0.99278 1.20067 0.98776 0.98030 0.92419 1.20919 1.03181 0.89084 1.03879 1.19707 0.97670 0.91719 0.97100 1.21081 1.03920 0.99069 0.94219 0.83674 0.91779 0.92399 0.85890 0.84844 0.91166 0.86067 0.83641 0.82913 0.89922 0.90257 0.90128 0.88986 0.92594 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.34 -7.72 8.84 -51.39 -0.45 -8.17 16 3 C 0.46 13.68 7.24 71.24 0.52 14.20 16 4 O -0.52 -19.12 16.26 28.33 0.46 -18.66 16 5 C 0.14 4.03 2.20 29.10 0.06 4.10 16 6 H 0.14 3.78 5.18 -2.39 -0.01 3.77 16 7 O -0.32 -10.67 8.26 -45.06 -0.37 -11.04 16 8 C 0.49 18.79 7.94 71.24 0.57 19.36 16 9 O -0.51 -21.45 15.08 21.99 0.33 -21.12 16 10 C -0.09 -3.58 6.27 71.24 0.45 -3.14 16 11 S -0.15 -7.78 18.55 -56.49 -1.05 -8.83 16 12 C -0.53 -30.96 10.04 67.96 0.68 -30.28 16 13 H 0.07 4.04 8.03 -2.91 -0.02 4.01 16 14 C 0.05 2.79 5.50 84.86 0.47 3.26 16 15 N -0.91 -55.42 13.97 21.65 0.30 -55.12 16 16 Si 0.91 44.24 27.74 68.60 1.90 46.14 16 17 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 20 C -0.12 -2.78 5.04 -19.86 -0.10 -2.88 16 21 C -0.11 -2.50 9.35 22.27 0.21 -2.29 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 23 C -0.10 -1.46 9.70 22.27 0.22 -1.24 16 24 C -0.09 -1.39 5.88 -19.87 -0.12 -1.50 16 25 C -0.11 -0.95 9.61 71.24 0.68 -0.27 16 26 C -0.06 -1.17 5.88 -19.87 -0.12 -1.28 16 27 C -0.13 -1.91 8.43 71.24 0.60 -1.31 16 28 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.12 4.76 8.14 -2.40 -0.02 4.74 16 32 H 0.13 4.85 8.14 -2.39 -0.02 4.83 16 33 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.12 3.00 7.35 -2.91 -0.02 2.98 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.08 0.57 5.95 -2.39 -0.01 0.55 16 39 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 40 H 0.09 1.25 7.23 -2.39 -0.02 1.23 16 41 H 0.06 0.98 6.03 -2.39 -0.01 0.97 16 42 H 0.10 1.00 5.95 -2.39 -0.01 0.98 16 Total: -1.00 -75.02 370.38 7.67 -67.35 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.01 Total: 13.11 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.54 Total: -3.66 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -0.03 Total: -59.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.14 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.05 Total: -8.83 kcal Total: -75.02 7.67 -67.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851194317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.838 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds