Wall clock time and date at job start Tue Mar 31 2020 20:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76198 * 100.00058 * 2 1 4 4 C 1.36413 * 125.10737 * 180.02562 * 3 2 1 5 5 C 1.36721 * 114.84872 * 179.97438 * 4 3 2 6 6 C 1.37183 * 114.61722 * 359.97438 * 5 4 3 7 7 C 1.40831 * 125.20749 * 179.74028 * 6 5 4 8 8 C 1.36193 * 119.99995 * 188.61125 * 7 6 5 9 9 C 1.40946 * 120.00245 * 27.89805 * 8 7 6 10 10 O 1.21863 * 119.99463 * 22.24920 * 9 8 7 11 11 N 1.34773 * 120.00218 * 202.24606 * 9 8 7 12 12 C 1.46961 * 120.59648 * 354.23150 * 11 9 8 13 13 C 1.53817 * 108.40092 * 124.75382 * 12 11 9 14 14 N 1.46965 * 108.57300 * 49.63808 * 13 12 11 15 15 C 1.36943 * 120.58880 * 124.67138 * 14 13 12 16 16 H 1.07994 * 119.99646 * 213.82407 * 15 14 13 17 17 C 1.38813 * 120.00098 * 33.82777 * 15 14 13 18 18 N 1.31618 * 120.00176 * 7.62367 * 17 15 14 19 19 Si 1.86797 * 120.00047 * 187.63337 * 17 15 14 20 20 H 1.48504 * 109.46876 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47636 * 119.99361 * 19 17 15 22 22 H 1.48496 * 109.47247 * 239.99753 * 19 17 15 23 23 C 1.46959 * 118.81569 * 304.64394 * 14 13 12 24 24 C 1.46970 * 120.59392 * 174.50837 * 11 9 8 25 25 S 1.75824 * 125.11155 * 359.96323 * 3 2 1 26 26 H 1.09002 * 109.47028 * 299.99888 * 1 2 3 27 27 H 1.09000 * 109.46962 * 59.99238 * 1 2 3 28 28 H 1.09000 * 109.47523 * 179.97438 * 1 2 3 29 29 H 1.07993 * 122.57621 * 359.94191 * 4 3 2 30 30 H 1.08001 * 122.69129 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00236 * 8.60501 * 7 6 5 32 32 H 1.08009 * 120.00231 * 207.89673 * 8 7 6 33 33 H 1.08993 * 109.61306 * 244.53956 * 12 11 9 34 34 H 1.09008 * 109.60747 * 5.05245 * 12 11 9 35 35 H 1.09000 * 109.73811 * 289.85645 * 13 12 11 36 36 H 1.08994 * 109.53231 * 169.30786 * 13 12 11 37 37 H 0.96999 * 120.00305 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.61323 * 295.48825 * 23 14 13 39 39 H 1.09004 * 109.75262 * 175.05577 * 23 14 13 40 40 H 1.09001 * 109.60871 * 354.95513 * 24 11 9 41 41 H 1.09001 * 109.60481 * 115.46061 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3513 2.3140 -0.0005 5 6 3.3451 3.6812 -0.0009 6 6 2.0954 4.2470 -0.0014 7 6 1.8303 5.6302 0.0033 8 6 0.5565 6.0788 0.1790 9 6 -0.3680 5.3067 0.9110 10 8 0.0290 4.4776 1.7110 11 7 -1.6910 5.4855 0.7263 12 6 -2.1863 6.5652 -0.1389 13 6 -3.1015 5.9480 -1.2101 14 7 -4.0748 5.0704 -0.5450 15 6 -5.4191 5.2520 -0.7327 16 1 -6.1092 5.0473 0.0724 17 6 -5.8947 5.6992 -1.9578 18 7 -5.0757 5.8052 -2.9827 19 14 -7.6968 6.1507 -2.1517 20 1 -8.4005 5.9444 -0.8603 21 1 -7.8097 7.5754 -2.5551 22 1 -8.3132 5.2909 -3.1937 23 6 -3.5797 3.9941 0.3246 24 6 -2.6644 4.6078 1.3913 25 16 0.8752 2.9809 -0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 4.2639 1.7367 0.0000 30 1 4.2514 4.2686 -0.0010 31 1 2.6372 6.3351 -0.1323 32 1 0.2546 7.0263 -0.2426 33 1 -2.7493 7.2829 0.4577 34 1 -1.3446 7.0649 -0.6185 35 1 -2.5051 5.3664 -1.9130 36 1 -3.6273 6.7413 -1.7413 37 1 -5.4080 6.1181 -3.8387 38 1 -3.0174 3.2735 -0.2692 39 1 -4.4198 3.4944 0.8070 40 1 -2.1386 3.8146 1.9226 41 1 -3.2607 5.1895 2.0944 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859487580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:06 Heat of formation + Delta-G solvation = 52.380527 kcal Electronic energy + Delta-G solvation = -24937.630978 eV Core-core repulsion = 21458.091141 eV Total energy + Delta-G solvation = -3479.539837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31341 -38.86108 -38.31543 -35.59680 -34.81190 -33.21950 -31.86616 -30.40226 -29.73214 -28.58405 -26.25517 -25.29026 -24.49598 -23.39356 -21.63306 -20.88497 -20.03067 -19.12529 -18.13426 -17.84695 -17.17410 -16.83901 -16.52520 -16.21974 -15.75308 -15.49780 -15.34298 -15.03400 -15.00487 -14.79271 -14.67055 -14.44271 -14.25355 -13.87276 -13.62641 -13.34567 -13.18561 -12.98726 -12.88507 -12.74452 -12.46259 -12.22416 -12.04256 -12.00128 -11.91129 -11.67599 -11.46943 -11.25659 -10.82732 -10.59470 -10.04545 -9.57118 -8.99133 -8.56636 -8.16976 -7.87920 -5.45250 -0.99615 0.39931 0.42157 0.77649 1.10051 1.40656 1.46945 1.49568 1.59082 1.79245 2.18692 2.37143 2.50241 3.27867 3.59274 3.89711 3.97825 4.04368 4.11269 4.23762 4.27628 4.31641 4.39378 4.43161 4.55885 4.59712 4.69851 4.70926 4.79672 4.81869 4.86995 5.04257 5.06163 5.20089 5.26170 5.36213 5.52695 5.61049 5.62626 5.69366 6.39000 6.53886 7.12325 7.19079 7.76966 8.33016 9.15629 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003432 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.683874 B = 8157.620315 C = 9082.213532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.041 6.041 3 C -0.242 4.242 4 C -0.144 4.144 5 C -0.069 4.069 6 C -0.228 4.228 7 C 0.044 3.956 8 C -0.284 4.284 9 C 0.531 3.469 10 O -0.567 6.567 11 N -0.597 5.597 12 C 0.093 3.907 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.267 4.267 16 H 0.066 0.934 17 C -0.039 4.039 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.136 3.864 24 C 0.106 3.894 25 S 0.200 5.800 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.181 0.819 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.066 0.934 34 H 0.106 0.894 35 H -0.002 1.002 36 H 0.074 0.926 37 H 0.252 0.748 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.557 -3.504 5.204 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.198 5.802 3 C -0.473 4.473 4 C -0.180 4.180 5 C -0.102 4.102 6 C -0.349 4.349 7 C 0.022 3.978 8 C -0.307 4.307 9 C 0.325 3.675 10 O -0.453 6.453 11 N -0.327 5.327 12 C -0.031 4.031 13 C 0.042 3.958 14 N -0.331 5.331 15 C -0.397 4.397 16 H 0.083 0.917 17 C -0.236 4.236 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.009 3.991 24 C -0.019 4.019 25 S 0.468 5.532 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.156 0.844 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.203 0.797 32 H 0.180 0.820 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.016 0.984 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.742 -5.004 5.449 17.394 hybrid contribution -0.692 1.288 -0.403 1.517 sum 15.050 -3.716 5.046 16.303 Atomic orbital electron populations 1.23810 0.94149 1.08975 1.05964 1.85041 1.07226 0.96572 1.91394 1.27813 1.03084 1.03134 1.13274 1.20207 0.96334 0.94807 1.06695 1.20997 0.97291 0.94099 0.97790 1.22684 0.96869 0.98120 1.17248 1.21006 0.96325 0.91820 0.88605 1.22229 0.94662 1.05746 1.08017 1.17546 0.82640 0.83140 0.84215 1.90808 1.79085 1.37417 1.37944 1.48124 1.05587 1.32341 1.46682 1.22638 0.98821 0.88807 0.92848 1.21056 0.89400 0.93886 0.91471 1.44159 1.02373 1.32128 1.54444 1.19508 0.83695 1.41323 0.95196 0.91659 1.25937 1.01401 1.01436 0.94784 1.70089 1.35571 1.50942 1.01167 0.85189 0.80306 0.77136 0.77672 1.19208 1.21383 1.22024 1.21326 0.95938 0.90161 0.91653 1.21983 0.90550 0.94222 0.95126 1.85246 1.06961 0.94212 1.66816 0.89936 0.90122 0.84422 0.82335 0.80145 0.79738 0.81954 0.91534 0.87634 0.98376 0.90745 0.93848 0.97268 0.91123 0.89683 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.47 113.37 1.07 -2.36 16 2 S -0.04 -0.95 22.88 -56.49 -1.29 -2.25 16 3 C -0.24 -6.55 6.70 67.39 0.45 -6.10 16 4 C -0.14 -3.32 10.15 21.49 0.22 -3.10 16 5 C -0.07 -1.47 10.12 21.67 0.22 -1.25 16 6 C -0.23 -6.02 5.55 22.66 0.13 -5.89 16 7 C 0.04 0.99 9.71 22.43 0.22 1.21 16 8 C -0.28 -7.58 8.90 22.46 0.20 -7.38 16 9 C 0.53 17.98 5.81 84.91 0.49 18.47 16 10 O -0.57 -21.48 12.34 -4.87 -0.06 -21.54 16 11 N -0.60 -21.20 2.94 -828.35 -2.44 -23.63 16 12 C 0.09 3.25 6.52 86.57 0.56 3.81 16 13 C 0.17 7.66 5.45 86.57 0.47 8.13 16 14 N -0.61 -29.55 2.95 -697.36 -2.06 -31.61 16 15 C -0.27 -14.12 9.56 84.03 0.80 -13.31 16 16 H 0.07 3.38 7.84 -2.91 -0.02 3.36 16 17 C -0.04 -2.11 5.10 84.86 0.43 -1.68 16 18 N -0.93 -52.60 11.03 21.65 0.24 -52.36 16 19 Si 0.97 43.09 29.56 68.60 2.03 45.12 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 C 0.14 5.65 6.67 86.42 0.58 6.23 16 24 C 0.11 3.85 6.58 86.41 0.57 4.42 16 25 S 0.20 6.24 16.87 -56.49 -0.95 5.29 16 26 H 0.08 1.93 8.00 -2.39 -0.02 1.92 16 27 H 0.08 1.89 8.00 -2.40 -0.02 1.87 16 28 H 0.14 2.17 8.14 -2.40 -0.02 2.15 16 29 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.16 3.53 6.07 -2.91 -0.02 3.51 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 3.00 5.40 -2.38 -0.01 2.98 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.07 3.78 6.11 -2.39 -0.01 3.76 16 37 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 2.81 7.94 -2.38 -0.02 2.79 16 40 H 0.08 3.02 7.02 -2.39 -0.02 3.01 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.08 355.74 2.92 -64.16 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.04 Total: 15.63 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.42 Total: 1.20 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -4.26 Total: -107.60 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -2.25 Total: 3.04 kcal Total: -67.08 2.92 -64.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859487580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.539 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds