Wall clock time and date at job start Tue Mar 31 2020 20:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.69964 * 2 1 4 4 O 1.20832 * 119.99800 * 94.99947 * 3 2 1 5 5 O 1.34231 * 120.00106 * 275.00144 * 3 2 1 6 6 C 1.45207 * 116.99852 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46796 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46878 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.47241 * 179.97438 * 8 7 6 10 10 C 1.76195 * 100.00056 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99854 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00128 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00227 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47461 * 89.99531 * 14 12 10 16 16 H 1.48497 * 109.47042 * 209.99609 * 14 12 10 17 17 H 1.48497 * 109.47080 * 329.98986 * 14 12 10 18 18 C 1.53461 * 109.70828 * 120.58240 * 2 1 3 19 19 O 1.43277 * 108.18274 * 59.98932 * 18 2 1 20 20 C 1.36118 * 116.71321 * 46.23965 * 19 18 2 21 21 C 1.38705 * 119.38704 * 162.88066 * 20 19 18 22 22 C 1.38198 * 120.05893 * 179.69597 * 21 20 19 23 23 C 1.38249 * 120.11343 * 359.97438 * 22 21 20 24 24 C 1.38196 * 120.11683 * 0.05876 * 23 22 21 25 25 C 1.38696 * 120.06550 * 0.02562 * 24 23 22 26 26 O 1.36108 * 119.40329 * 179.86363 * 25 24 23 27 27 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 30 30 H 1.09002 * 109.46525 * 299.99866 * 6 5 3 31 31 H 1.08995 * 109.47070 * 59.99552 * 6 5 3 32 32 H 1.08996 * 109.47136 * 299.99166 * 7 6 5 33 33 H 1.09004 * 109.47409 * 60.00054 * 7 6 5 34 34 H 1.08996 * 109.47138 * 300.00478 * 8 7 6 35 35 H 1.09004 * 109.46714 * 60.00048 * 8 7 6 36 36 H 0.96998 * 119.99437 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.70948 * 179.64989 * 18 2 1 38 38 H 1.09005 * 109.71156 * 300.27497 * 18 2 1 39 39 H 1.07998 * 119.97116 * 359.67378 * 21 20 19 40 40 H 1.07996 * 119.94284 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.94148 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.96731 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0381 1.4188 0.0000 4 8 2.3276 1.9568 1.0425 5 8 2.1689 2.0849 -1.1580 6 6 2.6645 3.4476 -1.0823 7 6 2.7461 4.0395 -2.4908 8 6 3.2677 5.4757 -2.4110 9 16 3.3650 6.1758 -4.0773 10 6 3.9766 7.7841 -3.6982 11 1 4.1698 8.0604 -2.6721 12 6 4.2090 8.6964 -4.7181 13 7 3.9730 8.3598 -5.9686 14 14 4.8567 10.4018 -4.3161 15 1 6.3415 10.3835 -4.3308 16 1 4.3636 11.3698 -5.3285 17 1 4.3799 10.8077 -2.9697 18 6 2.0476 -0.7350 1.2438 19 8 1.5574 -2.0808 1.2041 20 6 1.6710 -2.7386 0.0178 21 6 1.5575 -4.1208 -0.0076 22 6 1.6643 -4.8022 -1.2051 23 6 1.8837 -4.1086 -2.3807 24 6 1.9984 -2.7315 -2.3622 25 6 1.8940 -2.0415 -1.1636 26 8 2.0118 -0.6856 -1.1606 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9870 4.0473 -0.4744 31 1 3.6561 3.4490 -0.6299 32 1 3.4238 3.4398 -3.0982 33 1 1.7545 4.0381 -2.9436 34 1 2.5897 6.0752 -1.8035 35 1 4.2592 5.4775 -1.9580 36 1 4.1358 8.9973 -6.6813 37 1 3.1376 -0.7404 1.2406 38 1 1.6845 -0.2370 2.1428 39 1 1.3860 -4.6650 0.9094 40 1 1.5761 -5.8784 -1.2227 41 1 1.9663 -4.6439 -3.3151 42 1 2.1694 -2.1920 -3.2821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860181493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:54 Heat of formation + Delta-G solvation = -138.628490 kcal Electronic energy + Delta-G solvation = -25998.988916 eV Core-core repulsion = 22036.120684 eV Total energy + Delta-G solvation = -3962.868232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14941 -40.57381 -38.19911 -37.72827 -37.00718 -33.66053 -33.09099 -32.46138 -31.05585 -29.69041 -27.43717 -27.04513 -25.61519 -24.87021 -23.28355 -22.38752 -21.40858 -20.15825 -19.56872 -18.22354 -17.55761 -17.47762 -17.20229 -16.69782 -16.42808 -15.73926 -15.40703 -15.07128 -14.98158 -14.83676 -14.55257 -14.39416 -14.23192 -13.87840 -13.46346 -13.00680 -12.98159 -12.85604 -12.70950 -12.49315 -12.26360 -12.17698 -11.76200 -11.53189 -11.40385 -11.22086 -11.05151 -11.04059 -10.93183 -10.76090 -10.63436 -10.38044 -9.66598 -9.09584 -9.05201 -8.49106 -8.38147 -6.58796 -6.26659 -3.97967 0.89733 0.90853 1.57636 2.10218 2.50535 2.77101 3.19380 3.20271 3.27293 3.33144 3.48586 3.57401 4.03107 4.11648 4.17716 4.25853 4.59190 4.65187 4.82086 4.89777 4.94540 5.01599 5.02628 5.05846 5.09092 5.09845 5.14667 5.33929 5.40264 5.42944 5.52738 5.71704 5.75204 5.77890 5.80431 6.04315 6.09045 6.22671 6.24711 6.40398 6.42194 6.61755 6.95777 7.34220 7.57077 8.32793 9.19669 10.81454 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.001897 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.470169 B =14756.146101 C =15591.842333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 C 0.489 3.511 4 O -0.492 6.492 5 O -0.333 6.333 6 C 0.069 3.931 7 C -0.098 4.098 8 C -0.115 4.115 9 S -0.122 6.122 10 C -0.519 4.519 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.920 3.080 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.047 3.953 19 O -0.297 6.297 20 C 0.045 3.955 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.108 4.108 25 C 0.052 3.948 26 O -0.282 6.282 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -26.286 12.530 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.049 3.951 3 C 0.330 3.670 4 O -0.380 6.380 5 O -0.248 6.248 6 C -0.006 4.006 7 C -0.136 4.136 8 C -0.263 4.263 9 S 0.106 5.894 10 C -0.667 4.667 11 H 0.092 0.908 12 C -0.138 4.138 13 N -0.504 5.504 14 Si 0.746 3.254 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.029 4.029 19 O -0.211 6.211 20 C 0.000 4.000 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.127 4.127 25 C 0.008 3.992 26 O -0.197 6.197 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.079 -26.399 11.643 29.709 hybrid contribution 0.828 1.976 1.519 2.627 sum -6.250 -24.423 13.163 28.440 Atomic orbital electron populations 1.22320 0.90095 1.05150 1.05108 1.22194 0.97220 0.87773 0.87941 1.22378 0.74554 0.87313 0.82754 1.90739 1.45500 1.68675 1.33084 1.86565 1.75747 1.29330 1.33175 1.23433 0.99608 0.77277 1.00247 1.21291 1.03547 0.95158 0.93613 1.23182 1.02453 0.96262 1.04421 1.84678 1.86403 1.15256 1.03085 1.22692 1.50475 0.97651 0.95875 0.90836 1.25025 0.95120 0.99145 0.94507 1.70021 1.45668 1.35738 0.99010 0.86140 0.79052 0.81883 0.78306 1.20235 1.20718 1.19670 1.23516 1.00422 0.80730 0.98266 1.86379 1.78958 1.26002 1.29764 1.18972 1.04423 0.92494 0.84064 1.20449 1.03157 0.90057 0.99537 1.20957 1.00691 1.00174 0.91586 1.20973 1.00493 0.92959 0.98826 1.20549 1.02190 0.94106 0.95809 1.18964 1.04192 0.82337 0.93741 1.86491 1.78303 1.15889 1.38997 0.89481 0.89727 0.89507 0.90793 0.90819 0.90166 0.90227 0.91704 0.91704 0.92229 0.89634 0.84485 0.84709 0.84967 0.84832 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.48 37.16 0.32 -1.16 16 2 C 0.09 0.95 1.08 -91.53 -0.10 0.85 16 3 C 0.49 6.27 6.85 36.01 0.25 6.51 16 4 O -0.49 -6.91 15.90 -18.75 -0.30 -7.21 16 5 O -0.33 -4.69 9.99 -44.29 -0.44 -5.14 16 6 C 0.07 0.98 5.47 37.16 0.20 1.18 16 7 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 8 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 9 S -0.12 -3.16 21.44 -107.50 -2.30 -5.47 16 10 C -0.52 -14.74 9.50 30.94 0.29 -14.45 16 11 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 12 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 13 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 14 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.05 0.43 5.55 37.40 0.21 0.64 16 19 O -0.30 -2.93 9.86 -32.90 -0.32 -3.25 16 20 C 0.05 0.45 5.85 -39.14 -0.23 0.22 16 21 C -0.11 -0.90 9.96 -39.42 -0.39 -1.29 16 22 C -0.12 -0.76 10.04 -39.59 -0.40 -1.16 16 23 C -0.11 -0.80 10.04 -39.59 -0.40 -1.20 16 24 C -0.11 -0.98 9.96 -39.43 -0.39 -1.37 16 25 C 0.05 0.56 6.07 -39.14 -0.24 0.32 16 26 O -0.28 -3.39 9.61 -43.97 -0.42 -3.82 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.71 6.87 -51.93 -0.36 0.36 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.14 1.05 7.93 -51.93 -0.41 0.63 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -32.63 372.90 -9.18 -41.82 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.81 Total: -1.14 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.77 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.73 Total: -25.04 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.49 Total: -19.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.30 Total: -5.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.63 -9.18 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860181493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.813 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds