Wall clock time and date at job start Tue Mar 31 2020 20:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.69964 * 2 1 4 4 O 1.20832 * 119.99800 * 94.99947 * 3 2 1 5 5 O 1.34231 * 120.00106 * 275.00144 * 3 2 1 6 6 C 1.45207 * 116.99852 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46796 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.46878 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.47241 * 179.97438 * 8 7 6 10 10 C 1.76195 * 100.00056 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99854 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00128 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99819 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00227 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47461 * 89.99531 * 14 12 10 16 16 H 1.48497 * 109.47042 * 209.99609 * 14 12 10 17 17 H 1.48497 * 109.47080 * 329.98986 * 14 12 10 18 18 C 1.53461 * 109.70828 * 120.58240 * 2 1 3 19 19 O 1.43277 * 108.18274 * 59.98932 * 18 2 1 20 20 C 1.36118 * 116.71321 * 46.23965 * 19 18 2 21 21 C 1.38705 * 119.38704 * 162.88066 * 20 19 18 22 22 C 1.38198 * 120.05893 * 179.69597 * 21 20 19 23 23 C 1.38249 * 120.11343 * 359.97438 * 22 21 20 24 24 C 1.38196 * 120.11683 * 0.05876 * 23 22 21 25 25 C 1.38696 * 120.06550 * 0.02562 * 24 23 22 26 26 O 1.36108 * 119.40329 * 179.86363 * 25 24 23 27 27 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 30 30 H 1.09002 * 109.46525 * 299.99866 * 6 5 3 31 31 H 1.08995 * 109.47070 * 59.99552 * 6 5 3 32 32 H 1.08996 * 109.47136 * 299.99166 * 7 6 5 33 33 H 1.09004 * 109.47409 * 60.00054 * 7 6 5 34 34 H 1.08996 * 109.47138 * 300.00478 * 8 7 6 35 35 H 1.09004 * 109.46714 * 60.00048 * 8 7 6 36 36 H 0.96998 * 119.99437 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.70948 * 179.64989 * 18 2 1 38 38 H 1.09005 * 109.71156 * 300.27497 * 18 2 1 39 39 H 1.07998 * 119.97116 * 359.67378 * 21 20 19 40 40 H 1.07996 * 119.94284 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.94148 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.96731 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0381 1.4188 0.0000 4 8 2.3276 1.9568 1.0425 5 8 2.1689 2.0849 -1.1580 6 6 2.6645 3.4476 -1.0823 7 6 2.7461 4.0395 -2.4908 8 6 3.2677 5.4757 -2.4110 9 16 3.3650 6.1758 -4.0773 10 6 3.9766 7.7841 -3.6982 11 1 4.1698 8.0604 -2.6721 12 6 4.2090 8.6964 -4.7181 13 7 3.9730 8.3598 -5.9686 14 14 4.8567 10.4018 -4.3161 15 1 6.3415 10.3835 -4.3308 16 1 4.3636 11.3698 -5.3285 17 1 4.3799 10.8077 -2.9697 18 6 2.0476 -0.7350 1.2438 19 8 1.5574 -2.0808 1.2041 20 6 1.6710 -2.7386 0.0178 21 6 1.5575 -4.1208 -0.0076 22 6 1.6643 -4.8022 -1.2051 23 6 1.8837 -4.1086 -2.3807 24 6 1.9984 -2.7315 -2.3622 25 6 1.8940 -2.0415 -1.1636 26 8 2.0118 -0.6856 -1.1606 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9870 4.0473 -0.4744 31 1 3.6561 3.4490 -0.6299 32 1 3.4238 3.4398 -3.0982 33 1 1.7545 4.0381 -2.9436 34 1 2.5897 6.0752 -1.8035 35 1 4.2592 5.4775 -1.9580 36 1 4.1358 8.9973 -6.6813 37 1 3.1376 -0.7404 1.2406 38 1 1.6845 -0.2370 2.1428 39 1 1.3860 -4.6650 0.9094 40 1 1.5761 -5.8784 -1.2227 41 1 1.9663 -4.6439 -3.3151 42 1 2.1694 -2.1920 -3.2821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860181493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:53 Heat of formation + Delta-G solvation = -155.961701 kcal Electronic energy + Delta-G solvation = -25999.740540 eV Core-core repulsion = 22036.120684 eV Total energy + Delta-G solvation = -3963.619856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.92847 -41.54911 -38.88263 -38.47469 -38.07243 -34.99876 -34.60006 -33.90634 -31.67257 -30.34170 -28.42320 -28.13524 -27.61153 -25.82504 -23.95064 -23.27157 -22.74133 -20.95375 -20.39514 -19.57691 -18.96563 -18.37748 -18.22905 -17.70123 -17.19138 -16.90936 -16.51648 -16.31508 -16.12640 -15.99870 -15.59524 -15.39359 -15.10620 -14.87538 -14.63606 -14.25813 -14.07167 -13.86133 -13.63824 -13.55476 -13.23330 -13.13978 -12.96303 -12.82342 -12.67499 -12.50038 -12.47143 -12.38817 -12.19305 -11.90602 -11.62667 -11.61799 -11.42882 -11.16126 -10.37760 -9.68097 -9.16110 -8.69954 -8.39224 -6.16141 0.26502 0.29037 0.59537 1.06820 1.32698 1.39104 1.48659 1.70024 1.77240 2.06970 2.25690 2.71826 2.83057 2.95342 3.17152 3.28947 3.33100 3.47546 3.78995 3.88034 3.92593 4.09517 4.10636 4.20049 4.25718 4.28208 4.33889 4.39059 4.41582 4.44245 4.57982 4.63763 4.81240 4.84857 4.96572 4.98229 5.14624 5.19719 5.23259 5.38758 5.52139 5.67235 5.73232 6.16602 6.25581 6.31655 7.03179 8.70102 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.001897 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.470169 B =14756.146101 C =15591.842333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C 0.491 3.509 4 O -0.505 6.505 5 O -0.343 6.343 6 C 0.076 3.924 7 C -0.087 4.087 8 C -0.091 4.091 9 S -0.187 6.187 10 C -0.540 4.540 11 H 0.075 0.925 12 C 0.015 3.985 13 N -0.907 5.907 14 Si 0.995 3.005 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.263 1.263 18 C 0.049 3.951 19 O -0.300 6.300 20 C 0.027 3.973 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.124 4.124 25 C 0.027 3.973 26 O -0.304 6.304 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.272 0.728 37 H 0.080 0.920 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -27.466 13.804 31.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C 0.333 3.667 4 O -0.394 6.394 5 O -0.258 6.258 6 C 0.001 3.999 7 C -0.125 4.125 8 C -0.240 4.240 9 S 0.042 5.958 10 C -0.688 4.688 11 H 0.093 0.907 12 C -0.190 4.190 13 N -0.543 5.543 14 Si 0.817 3.183 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.187 1.187 18 C -0.027 4.027 19 O -0.214 6.214 20 C -0.018 4.018 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.017 4.017 26 O -0.220 6.220 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.276 -27.602 12.921 31.333 hybrid contribution 0.869 2.171 1.125 2.595 sum -6.407 -25.431 14.046 29.750 Atomic orbital electron populations 1.22317 0.88712 1.05499 1.05655 1.22284 0.98173 0.86367 0.88328 1.22790 0.73944 0.87951 0.82065 1.90725 1.46129 1.69201 1.33297 1.86552 1.75951 1.29146 1.34148 1.23219 1.00307 0.77781 0.98571 1.21102 1.03191 0.93053 0.95164 1.23057 1.03161 0.97832 0.99906 1.84679 1.86542 1.15573 1.09013 1.23051 1.50819 0.98695 0.96190 0.90678 1.26081 0.95093 1.03633 0.94228 1.70153 1.46632 1.37377 1.00124 0.84996 0.78575 0.76250 0.78471 1.19319 1.19915 1.18700 1.23564 1.00222 0.80719 0.98220 1.86365 1.79147 1.25998 1.29927 1.19237 1.05431 0.93330 0.83775 1.20800 1.02538 0.89373 1.00927 1.21376 0.98774 1.01743 0.90719 1.21337 0.99060 0.92131 1.00309 1.20782 1.02801 0.95242 0.95431 1.19233 1.05899 0.81802 0.94746 1.86427 1.78939 1.16959 1.39662 0.89873 0.89410 0.87990 0.89774 0.90321 0.90540 0.90210 0.91022 0.91221 0.91908 0.90130 0.82888 0.83055 0.81741 0.82204 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.48 71.98 0.61 -2.16 16 2 C 0.09 1.87 1.08 -11.38 -0.01 1.86 16 3 C 0.49 12.37 6.85 71.24 0.49 12.86 16 4 O -0.50 -13.79 15.90 21.95 0.35 -13.44 16 5 O -0.34 -9.54 9.99 -46.61 -0.47 -10.00 16 6 C 0.08 2.09 5.47 71.98 0.39 2.48 16 7 C -0.09 -2.78 5.60 30.59 0.17 -2.61 16 8 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 9 S -0.19 -9.84 21.44 -56.49 -1.21 -11.05 16 10 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16 11 H 0.08 4.13 7.80 -2.91 -0.02 4.10 16 12 C 0.01 0.83 5.49 84.85 0.47 1.30 16 13 N -0.91 -54.50 13.22 21.65 0.29 -54.21 16 14 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 C 0.05 0.88 5.55 72.14 0.40 1.28 16 19 O -0.30 -5.70 9.86 -82.66 -0.82 -6.52 16 20 C 0.03 0.51 5.85 22.56 0.13 0.64 16 21 C -0.12 -1.65 9.96 22.37 0.22 -1.43 16 22 C -0.11 -1.13 10.04 22.26 0.22 -0.90 16 23 C -0.11 -1.32 10.04 22.26 0.22 -1.10 16 24 C -0.12 -2.19 9.96 22.37 0.22 -1.97 16 25 C 0.03 0.58 6.07 22.56 0.14 0.72 16 26 O -0.30 -7.45 9.61 -71.94 -0.69 -8.14 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.43 6.87 -2.39 -0.02 1.41 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.15 2.18 7.93 -2.38 -0.02 2.16 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.89 372.90 5.23 -65.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.02 Total: 14.41 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.73 Total: -22.46 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.29 Total: -54.21 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.62 Total: -38.10 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.84 SS G_CDS: -1.21 Total: -11.05 kcal Total: -70.89 5.23 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860181493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.305 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds