Wall clock time and date at job start Tue Mar 31 2020 20:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.71239 * 2 1 4 4 O 1.20825 * 120.00280 * 265.59353 * 3 2 1 5 5 O 1.34225 * 119.99949 * 85.58753 * 3 2 1 6 6 C 1.45204 * 117.00187 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47189 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47053 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47389 * 180.02562 * 8 7 6 10 10 C 1.76194 * 100.00282 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00224 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00170 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99728 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47336 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46900 * 119.99751 * 14 12 10 17 17 H 1.48501 * 109.47215 * 239.99869 * 14 12 10 18 18 C 1.53474 * 109.74311 * 239.38929 * 2 1 3 19 19 O 1.43173 * 108.25562 * 300.01731 * 18 2 1 20 20 C 1.36103 * 116.71441 * 313.82296 * 19 18 2 21 21 C 1.38711 * 119.40115 * 197.02565 * 20 19 18 22 22 C 1.38197 * 120.06666 * 180.36127 * 21 20 19 23 23 C 1.38249 * 120.11469 * 0.24416 * 22 21 20 24 24 C 1.38196 * 120.11190 * 359.43099 * 23 22 21 25 25 C 1.38703 * 120.06572 * 0.52292 * 24 23 22 26 26 O 1.36109 * 119.39519 * 179.90954 * 25 24 23 27 27 H 1.09002 * 109.46703 * 299.41183 * 1 2 3 28 28 H 1.09001 * 109.46972 * 59.41128 * 1 2 3 29 29 H 1.08998 * 109.47034 * 179.41324 * 1 2 3 30 30 H 1.08999 * 109.46797 * 300.00189 * 6 5 3 31 31 H 1.09000 * 109.46579 * 59.99931 * 6 5 3 32 32 H 1.09000 * 109.47300 * 300.00391 * 7 6 5 33 33 H 1.08999 * 109.46604 * 60.00256 * 7 6 5 34 34 H 1.09000 * 109.47492 * 300.00403 * 8 7 6 35 35 H 1.09005 * 109.46982 * 60.00268 * 8 7 6 36 36 H 0.97001 * 119.99529 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.70827 * 59.71135 * 18 2 1 38 38 H 1.08999 * 109.70531 * 180.28779 * 18 2 1 39 39 H 1.08003 * 119.96506 * 0.34568 * 21 20 19 40 40 H 1.08002 * 119.93909 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.94307 * 179.66788 * 23 22 21 42 42 H 1.07996 * 119.97051 * 180.27286 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0383 1.4187 0.0000 4 8 2.3178 1.9603 -1.0433 5 8 2.1805 2.0806 1.1590 6 6 2.6745 3.4439 1.0832 7 6 2.7688 4.0313 2.4928 8 6 3.2900 5.4675 2.4130 9 16 3.4023 6.1622 4.0806 10 6 4.0095 7.7721 3.7012 11 1 4.1931 8.0519 2.6743 12 6 4.2518 8.6809 4.7221 13 7 4.0276 8.3400 5.9735 14 14 4.8962 10.3875 4.3198 15 1 5.0629 10.5200 2.8502 16 1 3.9305 11.4075 4.8019 17 1 6.2067 10.5919 4.9877 18 6 2.0484 -0.7356 -1.2432 19 8 1.5597 -2.0808 -1.2048 20 6 1.6715 -2.7387 -0.0186 21 6 1.5574 -4.1208 0.0068 22 6 1.6612 -4.8022 1.2047 23 6 1.8739 -4.1082 2.3813 24 6 1.9953 -2.7317 2.3621 25 6 1.8931 -2.0418 1.1632 26 8 2.0129 -0.6860 1.1603 27 1 -0.3633 0.5047 0.8952 28 1 -0.3633 0.5230 -0.8847 29 1 -0.3633 -1.0276 -0.0105 30 1 3.6616 3.4474 0.6209 31 1 1.9906 4.0454 0.4844 32 1 1.7816 4.0277 2.9548 33 1 3.4525 3.4298 3.0920 34 1 4.2774 5.4707 1.9513 35 1 2.6067 6.0692 1.8137 36 1 4.1973 8.9750 6.6869 37 1 1.6855 -0.2381 -2.1427 38 1 3.1384 -0.7396 -1.2400 39 1 1.3870 -4.6650 -0.9104 40 1 1.5715 -5.8784 1.2222 41 1 1.9492 -4.6430 3.3165 42 1 2.1659 -2.1923 3.2820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860181494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:59 Heat of formation + Delta-G solvation = -138.699693 kcal Electronic energy + Delta-G solvation = -26000.091122 eV Core-core repulsion = 22037.219803 eV Total energy + Delta-G solvation = -3962.871319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.15196 -40.57565 -38.19885 -37.73349 -37.00807 -33.65973 -33.09033 -32.46381 -31.05623 -29.69158 -27.43909 -27.04642 -25.61754 -24.87049 -23.28405 -22.38601 -21.40830 -20.15747 -19.56931 -18.22609 -17.55971 -17.47923 -17.19960 -16.70168 -16.42848 -15.74167 -15.40807 -15.07139 -14.98075 -14.83935 -14.55311 -14.39427 -14.23300 -13.87799 -13.46453 -13.00870 -12.98419 -12.85698 -12.70957 -12.49332 -12.25991 -12.17593 -11.76312 -11.53368 -11.40613 -11.22400 -11.06141 -11.03830 -10.92003 -10.76582 -10.62474 -10.38027 -9.65928 -9.10565 -9.05175 -8.49076 -8.37757 -6.58891 -6.26999 -3.98136 0.89741 0.90854 1.58055 2.10301 2.50328 2.77164 3.19002 3.19696 3.27983 3.33132 3.48754 3.57452 4.03107 4.11699 4.17443 4.25833 4.59168 4.65135 4.82124 4.89730 4.94503 5.01615 5.02639 5.05835 5.09034 5.09653 5.14715 5.33893 5.40293 5.42969 5.52582 5.71689 5.75228 5.77917 5.80450 6.04373 6.09063 6.22709 6.24746 6.40406 6.42293 6.61781 6.95835 7.34318 7.57257 8.32876 9.19514 10.81192 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.001898 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.372060 B =14747.754209 C =15586.466699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 C 0.489 3.511 4 O -0.492 6.492 5 O -0.333 6.333 6 C 0.069 3.931 7 C -0.098 4.098 8 C -0.115 4.115 9 S -0.123 6.123 10 C -0.518 4.518 11 H 0.074 0.926 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.920 3.080 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.046 3.954 19 O -0.296 6.296 20 C 0.045 3.955 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.108 4.108 25 C 0.052 3.948 26 O -0.282 6.282 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.267 0.733 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -26.249 -12.549 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.049 3.951 3 C 0.330 3.670 4 O -0.380 6.380 5 O -0.248 6.248 6 C -0.006 4.006 7 C -0.136 4.136 8 C -0.263 4.263 9 S 0.105 5.895 10 C -0.666 4.666 11 H 0.092 0.908 12 C -0.138 4.138 13 N -0.504 5.504 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.030 4.030 19 O -0.211 6.211 20 C 0.000 4.000 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.126 4.126 25 C 0.007 3.993 26 O -0.197 6.197 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.201 -26.367 -11.666 29.718 hybrid contribution 0.807 1.983 -1.511 2.621 sum -6.394 -24.384 -13.177 28.444 Atomic orbital electron populations 1.22316 0.90082 1.05147 1.05119 1.22202 0.97207 0.87776 0.87947 1.22374 0.74534 0.87322 0.82768 1.90738 1.45745 1.68447 1.33069 1.86564 1.75749 1.29401 1.33100 1.23433 0.99619 0.77272 1.00244 1.21289 1.03532 0.95190 0.93595 1.23180 1.02453 0.96263 1.04416 1.84680 1.86516 1.15319 1.02946 1.22738 1.50477 0.97626 0.95801 0.90779 1.25029 0.95130 0.99157 0.94505 1.70028 1.45802 1.35665 0.98934 0.86088 0.78526 0.82137 0.78623 1.19585 1.20533 1.20527 1.23497 1.00428 0.80743 0.98283 1.86358 1.79030 1.25945 1.29730 1.18971 1.04433 0.92495 0.84056 1.20449 1.03157 0.90054 0.99542 1.20957 1.00708 1.00171 0.91571 1.20973 1.00498 0.92967 0.98814 1.20549 1.02163 0.94122 0.95811 1.18968 1.04194 0.82353 0.93737 1.86502 1.78213 1.15885 1.39081 0.89478 0.89499 0.89722 0.90814 0.90801 0.90222 0.90173 0.91700 0.91704 0.92280 0.84499 0.89647 0.84710 0.84966 0.84831 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.49 37.16 0.32 -1.16 16 2 C 0.09 0.95 1.08 -91.53 -0.10 0.85 16 3 C 0.49 6.27 6.85 36.00 0.25 6.52 16 4 O -0.49 -6.91 15.91 -18.75 -0.30 -7.21 16 5 O -0.33 -4.70 9.98 -44.32 -0.44 -5.14 16 6 C 0.07 0.98 5.47 37.16 0.20 1.18 16 7 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 8 C -0.11 -2.26 5.67 37.15 0.21 -2.05 16 9 S -0.12 -3.17 21.44 -107.50 -2.30 -5.48 16 10 C -0.52 -14.73 9.50 30.94 0.29 -14.44 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 13 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 14 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.05 0.43 5.55 37.40 0.21 0.64 16 19 O -0.30 -2.92 9.86 -32.86 -0.32 -3.25 16 20 C 0.05 0.45 5.85 -39.13 -0.23 0.22 16 21 C -0.11 -0.90 9.96 -39.42 -0.39 -1.29 16 22 C -0.12 -0.76 10.04 -39.59 -0.40 -1.16 16 23 C -0.11 -0.80 10.04 -39.59 -0.40 -1.20 16 24 C -0.11 -0.98 9.96 -39.43 -0.39 -1.37 16 25 C 0.05 0.56 6.07 -39.14 -0.24 0.32 16 26 O -0.28 -3.39 9.61 -44.07 -0.42 -3.82 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.71 6.87 -51.93 -0.36 0.35 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.14 1.05 7.92 -51.93 -0.41 0.63 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -32.66 372.90 -9.18 -41.85 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.81 Total: -1.17 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.77 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.73 Total: -25.04 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.49 Total: -19.41 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.66 -9.18 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860181494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.853 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds