Wall clock time and date at job start Tue Mar 31 2020 20:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.71239 * 2 1 4 4 O 1.20825 * 120.00280 * 265.59353 * 3 2 1 5 5 O 1.34225 * 119.99949 * 85.58753 * 3 2 1 6 6 C 1.45204 * 117.00187 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47189 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47053 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47389 * 180.02562 * 8 7 6 10 10 C 1.76194 * 100.00282 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00224 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00170 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99728 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47336 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46900 * 119.99751 * 14 12 10 17 17 H 1.48501 * 109.47215 * 239.99869 * 14 12 10 18 18 C 1.53474 * 109.74311 * 239.38929 * 2 1 3 19 19 O 1.43173 * 108.25562 * 300.01731 * 18 2 1 20 20 C 1.36103 * 116.71441 * 313.82296 * 19 18 2 21 21 C 1.38711 * 119.40115 * 197.02565 * 20 19 18 22 22 C 1.38197 * 120.06666 * 180.36127 * 21 20 19 23 23 C 1.38249 * 120.11469 * 0.24416 * 22 21 20 24 24 C 1.38196 * 120.11190 * 359.43099 * 23 22 21 25 25 C 1.38703 * 120.06572 * 0.52292 * 24 23 22 26 26 O 1.36109 * 119.39519 * 179.90954 * 25 24 23 27 27 H 1.09002 * 109.46703 * 299.41183 * 1 2 3 28 28 H 1.09001 * 109.46972 * 59.41128 * 1 2 3 29 29 H 1.08998 * 109.47034 * 179.41324 * 1 2 3 30 30 H 1.08999 * 109.46797 * 300.00189 * 6 5 3 31 31 H 1.09000 * 109.46579 * 59.99931 * 6 5 3 32 32 H 1.09000 * 109.47300 * 300.00391 * 7 6 5 33 33 H 1.08999 * 109.46604 * 60.00256 * 7 6 5 34 34 H 1.09000 * 109.47492 * 300.00403 * 8 7 6 35 35 H 1.09005 * 109.46982 * 60.00268 * 8 7 6 36 36 H 0.97001 * 119.99529 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.70827 * 59.71135 * 18 2 1 38 38 H 1.08999 * 109.70531 * 180.28779 * 18 2 1 39 39 H 1.08003 * 119.96506 * 0.34568 * 21 20 19 40 40 H 1.08002 * 119.93909 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.94307 * 179.66788 * 23 22 21 42 42 H 1.07996 * 119.97051 * 180.27286 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0383 1.4187 0.0000 4 8 2.3178 1.9603 -1.0433 5 8 2.1805 2.0806 1.1590 6 6 2.6745 3.4439 1.0832 7 6 2.7688 4.0313 2.4928 8 6 3.2900 5.4675 2.4130 9 16 3.4023 6.1622 4.0806 10 6 4.0095 7.7721 3.7012 11 1 4.1931 8.0519 2.6743 12 6 4.2518 8.6809 4.7221 13 7 4.0276 8.3400 5.9735 14 14 4.8962 10.3875 4.3198 15 1 5.0629 10.5200 2.8502 16 1 3.9305 11.4075 4.8019 17 1 6.2067 10.5919 4.9877 18 6 2.0484 -0.7356 -1.2432 19 8 1.5597 -2.0808 -1.2048 20 6 1.6715 -2.7387 -0.0186 21 6 1.5574 -4.1208 0.0068 22 6 1.6612 -4.8022 1.2047 23 6 1.8739 -4.1082 2.3813 24 6 1.9953 -2.7317 2.3621 25 6 1.8931 -2.0418 1.1632 26 8 2.0129 -0.6860 1.1603 27 1 -0.3633 0.5047 0.8952 28 1 -0.3633 0.5230 -0.8847 29 1 -0.3633 -1.0276 -0.0105 30 1 3.6616 3.4474 0.6209 31 1 1.9906 4.0454 0.4844 32 1 1.7816 4.0277 2.9548 33 1 3.4525 3.4298 3.0920 34 1 4.2774 5.4707 1.9513 35 1 2.6067 6.0692 1.8137 36 1 4.1973 8.9750 6.6869 37 1 1.6855 -0.2381 -2.1427 38 1 3.1384 -0.7396 -1.2400 39 1 1.3870 -4.6650 -0.9104 40 1 1.5715 -5.8784 1.2222 41 1 1.9492 -4.6430 3.3165 42 1 2.1659 -2.1923 3.2820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860181494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:58 Heat of formation + Delta-G solvation = -156.054658 kcal Electronic energy + Delta-G solvation = -26000.843690 eV Core-core repulsion = 22037.219803 eV Total energy + Delta-G solvation = -3963.623887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.93077 -41.55139 -38.88177 -38.48006 -38.07403 -34.99926 -34.60302 -33.90492 -31.67294 -30.34279 -28.42479 -28.13726 -27.61470 -25.82550 -23.95121 -23.27015 -22.74128 -20.95368 -20.39516 -19.58009 -18.96849 -18.37852 -18.22673 -17.70417 -17.19274 -16.91392 -16.52044 -16.31405 -16.12694 -16.00026 -15.59451 -15.39420 -15.10726 -14.87673 -14.63658 -14.25918 -14.07288 -13.85845 -13.64097 -13.55456 -13.23518 -13.14234 -12.97885 -12.81931 -12.66356 -12.50286 -12.47038 -12.38652 -12.19507 -11.90378 -11.62103 -11.61768 -11.42499 -11.17431 -10.37510 -9.68069 -9.16076 -8.70062 -8.39617 -6.16364 0.26511 0.29045 0.59883 1.06852 1.32746 1.37881 1.49311 1.70060 1.77108 2.07098 2.25334 2.71786 2.83109 2.95052 3.17132 3.28960 3.32977 3.47576 3.78964 3.88025 3.92497 4.09523 4.10616 4.20116 4.25608 4.28144 4.33889 4.39046 4.41594 4.44266 4.58010 4.63719 4.81247 4.84795 4.96537 4.98268 5.14648 5.19743 5.23287 5.38915 5.52159 5.67254 5.73331 6.16634 6.25660 6.31723 7.02981 8.69985 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.001898 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.372060 B =14747.754209 C =15586.466699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C 0.491 3.509 4 O -0.505 6.505 5 O -0.343 6.343 6 C 0.076 3.924 7 C -0.087 4.087 8 C -0.091 4.091 9 S -0.187 6.187 10 C -0.539 4.539 11 H 0.075 0.925 12 C 0.015 3.985 13 N -0.907 5.907 14 Si 0.996 3.004 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.048 3.952 19 O -0.300 6.300 20 C 0.027 3.973 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.124 4.124 25 C 0.027 3.973 26 O -0.304 6.304 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.272 0.728 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -27.424 -13.809 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C 0.333 3.667 4 O -0.394 6.394 5 O -0.258 6.258 6 C 0.001 3.999 7 C -0.125 4.125 8 C -0.240 4.240 9 S 0.042 5.958 10 C -0.687 4.687 11 H 0.093 0.907 12 C -0.190 4.190 13 N -0.543 5.543 14 Si 0.818 3.182 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.027 4.027 19 O -0.214 6.214 20 C -0.018 4.018 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.017 4.017 26 O -0.220 6.220 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.171 0.829 38 H 0.099 0.901 39 H 0.169 0.831 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.420 -27.565 -12.930 31.338 hybrid contribution 0.853 2.178 -1.119 2.594 sum -6.567 -25.387 -14.049 29.749 Atomic orbital electron populations 1.22313 0.88694 1.05516 1.05651 1.22292 0.98163 0.86367 0.88333 1.22785 0.73923 0.87962 0.82078 1.90723 1.46373 1.68976 1.33279 1.86551 1.75957 1.29214 1.34076 1.23219 1.00322 0.77780 0.98561 1.21100 1.03179 0.93076 0.95151 1.23056 1.03151 0.97852 0.99898 1.84680 1.86654 1.15610 1.08874 1.23086 1.50848 0.98680 0.96083 0.90686 1.26083 0.95093 1.03644 0.94227 1.70156 1.46739 1.37345 1.00059 0.84945 0.78037 0.76455 0.78799 1.18647 1.19663 1.19703 1.23545 1.00227 0.80734 0.98237 1.86344 1.79219 1.25939 1.29893 1.19236 1.05442 0.93330 0.83766 1.20800 1.02537 0.89370 1.00933 1.21376 0.98790 1.01739 0.90705 1.21337 0.99059 0.92138 1.00302 1.20782 1.02779 0.95258 0.95432 1.19236 1.05900 0.81818 0.94742 1.86438 1.78849 1.16955 1.39746 0.89863 0.87999 0.89391 0.90315 0.89782 0.90200 0.90548 0.91230 0.91016 0.91903 0.82907 0.90142 0.83054 0.81740 0.82204 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.49 71.98 0.61 -2.16 16 2 C 0.09 1.87 1.08 -11.38 -0.01 1.86 16 3 C 0.49 12.37 6.85 71.24 0.49 12.86 16 4 O -0.50 -13.79 15.91 21.97 0.35 -13.44 16 5 O -0.34 -9.54 9.98 -46.51 -0.46 -10.01 16 6 C 0.08 2.09 5.47 71.98 0.39 2.48 16 7 C -0.09 -2.78 5.60 30.59 0.17 -2.61 16 8 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 9 S -0.19 -9.85 21.44 -56.49 -1.21 -11.06 16 10 C -0.54 -30.92 9.50 67.96 0.65 -30.27 16 11 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -54.49 13.22 21.65 0.29 -54.21 16 14 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 C 0.05 0.88 5.55 72.14 0.40 1.28 16 19 O -0.30 -5.69 9.86 -82.49 -0.81 -6.51 16 20 C 0.03 0.51 5.85 22.56 0.13 0.64 16 21 C -0.12 -1.65 9.96 22.37 0.22 -1.43 16 22 C -0.11 -1.13 10.04 22.26 0.22 -0.90 16 23 C -0.11 -1.32 10.04 22.26 0.22 -1.10 16 24 C -0.12 -2.19 9.96 22.37 0.22 -1.97 16 25 C 0.03 0.58 6.07 22.56 0.14 0.72 16 26 O -0.30 -7.45 9.61 -71.86 -0.69 -8.14 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.43 6.87 -2.39 -0.02 1.41 16 30 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.66 8.14 -2.40 -0.02 2.64 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.15 2.18 7.92 -2.39 -0.02 2.16 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.95 372.90 5.24 -65.71 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.02 Total: 14.31 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.73 Total: -22.45 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.29 Total: -54.21 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.62 Total: -38.09 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -9.85 SS G_CDS: -1.21 Total: -11.06 kcal Total: -70.95 5.24 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860181494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.349 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds