Wall clock time and date at job start Tue Mar 31 2020 20:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00543 * 2 1 4 4 C 1.53003 * 109.47742 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46763 * 65.00039 * 4 3 2 6 6 C 1.46509 * 119.99866 * 275.00024 * 5 4 3 7 7 C 1.50703 * 109.47120 * 275.00241 * 6 5 4 8 8 H 1.07994 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99533 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99881 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00295 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47045 * 90.00176 * 11 9 7 13 13 H 1.48506 * 109.46865 * 210.00079 * 11 9 7 14 14 H 1.48498 * 109.47277 * 329.99548 * 11 9 7 15 15 S 1.65598 * 119.99938 * 95.00472 * 5 4 3 16 16 O 1.42099 * 106.40010 * 156.46054 * 15 5 4 17 17 O 1.42098 * 106.40311 * 23.53768 * 15 5 4 18 18 N 1.65601 * 107.21655 * 269.99415 * 15 5 4 19 19 C 1.47336 * 121.36783 * 90.00137 * 18 15 5 20 20 C 1.53101 * 107.88947 * 118.18643 * 19 18 15 21 21 C 1.49971 * 110.40544 * 45.48649 * 20 19 18 22 22 C 1.29620 * 124.58341 * 341.00043 * 21 20 19 23 23 Cl 1.73606 * 118.18153 * 180.83386 * 22 21 20 24 24 C 1.47001 * 121.37422 * 270.02276 * 18 15 5 25 25 H 1.09005 * 109.46969 * 59.99494 * 1 2 3 26 26 H 1.08992 * 109.47521 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47096 * 300.00451 * 1 2 3 28 28 H 1.09005 * 109.46889 * 59.99573 * 3 2 1 29 29 H 1.08995 * 109.47408 * 299.99968 * 3 2 1 30 30 H 1.09000 * 109.46613 * 305.00549 * 4 3 2 31 31 H 1.08998 * 109.47342 * 185.00252 * 4 3 2 32 32 H 1.09000 * 109.46953 * 35.00593 * 6 5 4 33 33 H 1.09000 * 109.46660 * 154.99804 * 6 5 4 34 34 H 0.96998 * 120.00319 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.77854 * 237.78656 * 19 18 15 36 36 H 1.09004 * 109.77720 * 358.59227 * 19 18 15 37 37 H 1.09004 * 109.31424 * 165.76851 * 20 19 18 38 38 H 1.09000 * 109.31546 * 285.19279 * 20 19 18 39 39 H 1.08000 * 117.70835 * 161.02668 * 21 20 19 40 40 H 1.08993 * 109.52118 * 342.86429 * 24 18 15 41 41 H 1.09001 * 109.51897 * 102.98913 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8956 -1.3758 7 6 5.3000 -1.4251 -0.8239 8 1 6.0336 -0.7427 -0.4209 9 6 5.5518 -2.7806 -0.8345 10 7 6.6848 -3.2427 -0.3524 11 14 4.2837 -3.9607 -1.5336 12 1 4.5347 -4.1545 -2.9843 13 1 4.3852 -5.2671 -0.8348 14 1 2.9233 -3.3988 -1.3372 15 16 4.4474 1.5120 -2.5244 16 8 5.3032 0.7102 -3.3268 17 8 4.8443 2.7592 -1.9709 18 7 3.0983 1.8132 -3.4363 19 6 2.2425 2.9839 -3.1762 20 6 2.2628 3.8682 -4.4259 21 6 2.0849 3.0342 -5.6595 22 6 2.2833 1.7545 -5.7174 23 17 2.0482 0.9565 -7.2412 24 6 2.7051 0.9232 -4.5382 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1764 0.0903 32 1 3.1683 -1.3223 -0.8172 33 1 3.9136 -1.1719 -2.4266 34 1 6.8622 -4.1963 -0.3602 35 1 1.2228 2.6573 -2.9720 36 1 2.6296 3.5417 -2.3235 37 1 1.4552 4.5977 -4.3645 38 1 3.2161 4.3937 -4.4802 39 1 1.7699 3.5349 -6.5631 40 1 3.5508 0.2955 -4.8189 41 1 1.8743 0.2938 -4.2192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867596715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:20 Heat of formation + Delta-G solvation = -98.360739 kcal Electronic energy + Delta-G solvation = -27125.947614 eV Core-core repulsion = 23194.685425 eV Total energy + Delta-G solvation = -3931.262189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.76362 -37.95994 -36.85550 -36.47905 -35.52686 -35.29912 -32.60320 -32.42878 -31.09917 -29.85179 -27.22682 -25.90224 -25.16721 -23.74918 -22.68461 -21.63920 -19.48732 -17.97265 -17.69140 -16.99817 -16.78618 -16.25928 -16.03206 -15.69881 -15.64076 -15.03352 -14.87288 -14.60230 -14.14646 -13.96781 -13.70624 -13.11729 -12.86447 -12.56508 -12.46213 -12.37475 -12.28208 -12.12110 -11.91065 -11.84635 -11.72049 -11.45785 -11.38466 -11.22280 -11.02553 -10.94168 -10.88127 -10.63613 -10.35066 -10.17402 -9.51999 -9.49884 -9.18588 -9.01830 -8.51853 -8.11969 -6.01907 -4.00185 0.92802 1.71515 2.07168 3.23382 3.34214 3.40478 3.41319 3.88270 3.97471 4.35560 4.45600 4.66792 4.73216 4.87526 5.04563 5.10494 5.20120 5.24728 5.26728 5.30714 5.38577 5.43101 5.44481 5.48726 5.52790 5.61097 5.68345 5.73197 5.84104 6.05935 6.19850 6.31310 6.35461 6.48125 6.90868 7.19488 7.32503 7.44158 7.67083 8.54946 9.01984 9.57964 11.11719 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.005249 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.632128 B = 5333.094070 C = 6029.271011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.041 3.959 4 C 0.121 3.879 5 N -0.976 5.976 6 C 0.229 3.771 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.898 5.898 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 S 2.778 3.222 16 O -0.953 6.953 17 O -0.988 6.988 18 N -1.012 6.012 19 C 0.117 3.883 20 C -0.097 4.097 21 C -0.136 4.136 22 C -0.074 4.074 23 Cl -0.087 7.087 24 C 0.159 3.841 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 13.427 -5.980 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.038 4.038 4 C -0.006 4.006 5 N -0.816 5.816 6 C 0.105 3.895 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.536 5.536 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.185 1.185 15 S 2.788 3.212 16 O -0.937 6.937 17 O -0.972 6.972 18 N -0.850 5.850 19 C -0.008 4.008 20 C -0.136 4.136 21 C -0.156 4.156 22 C -0.102 4.102 23 Cl -0.058 7.058 24 C 0.033 3.967 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.035 13.303 -6.246 21.025 hybrid contribution -1.269 -0.722 -0.546 1.559 sum -16.304 12.581 -6.791 21.685 Atomic orbital electron populations 1.22705 0.82290 1.02457 0.99199 1.88101 1.18467 1.27118 1.95136 1.23221 0.95626 0.85294 0.99625 1.21331 0.90652 0.99476 0.89153 1.57474 1.81457 1.18221 1.24462 1.19515 0.98974 0.74155 0.96813 1.21376 1.01713 0.93053 1.40628 0.90594 1.24827 0.95214 0.98031 0.94779 1.69900 1.23603 1.13932 1.46193 0.86965 0.82846 0.80934 0.79776 1.19945 1.21118 1.18476 1.02172 0.73014 0.72902 0.73135 1.93638 1.61717 1.69625 1.68705 1.93524 1.80492 1.44148 1.79006 1.58791 1.46520 1.34672 1.45045 1.21475 0.95444 0.86010 0.97917 1.20776 1.03529 0.97451 0.91871 1.22032 0.99824 0.93552 1.00152 1.22627 1.05103 0.94644 0.87858 1.98378 1.95574 1.81450 1.30417 1.20221 1.02535 0.90919 0.82980 0.94673 0.89952 0.94565 0.92774 0.93920 0.88231 0.88629 0.93002 0.95976 0.92642 0.90995 0.88506 0.89276 0.89428 0.86406 0.86899 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.65 9.02 -35.23 -0.32 -5.97 16 3 C 0.04 0.53 6.28 37.16 0.23 0.77 16 4 C 0.12 1.96 6.13 -4.04 -0.02 1.93 16 5 N -0.98 -19.17 2.81 -115.65 -0.33 -19.50 16 6 C 0.23 5.35 4.01 -5.19 -0.02 5.33 16 7 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 11 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 15 S 2.78 52.76 6.13 -107.50 -0.66 52.10 16 16 O -0.95 -22.17 15.76 -57.17 -0.90 -23.07 16 17 O -0.99 -19.10 15.43 -57.17 -0.88 -19.98 16 18 N -1.01 -14.40 3.35 -114.79 -0.38 -14.79 16 19 C 0.12 1.22 5.33 -3.53 -0.02 1.20 16 20 C -0.10 -0.87 6.28 -28.18 -0.18 -1.05 16 21 C -0.14 -1.37 9.48 -35.99 -0.34 -1.72 16 22 C -0.07 -0.89 6.34 -35.82 -0.23 -1.11 16 23 Cl -0.09 -1.01 28.76 -51.86 -1.49 -2.50 16 24 C 0.16 2.18 6.53 -5.10 -0.03 2.14 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.48 6.70 -51.93 -0.35 0.13 16 30 H 0.10 1.74 8.11 -51.93 -0.42 1.32 16 31 H 0.10 1.39 6.91 -51.93 -0.36 1.03 16 32 H 0.05 1.20 5.66 -51.93 -0.29 0.91 16 33 H 0.02 0.52 7.04 -51.93 -0.37 0.16 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.07 0.62 7.93 -51.93 -0.41 0.20 16 36 H 0.10 0.97 7.12 -51.93 -0.37 0.60 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 40 H 0.11 1.75 6.98 -51.93 -0.36 1.39 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -35.02 358.01 -9.30 -44.32 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.90 Total: -1.28 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 0.06 Total: -4.37 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.06 Total: -61.32 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -2.10 Total: -49.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.66 Total: 52.10 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.49 Total: -2.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.02 -9.30 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867596715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.041 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds