Wall clock time and date at job start Tue Mar 31 2020 20:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00543 * 2 1 4 4 C 1.53003 * 109.47742 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46763 * 65.00039 * 4 3 2 6 6 C 1.46509 * 119.99866 * 275.00024 * 5 4 3 7 7 C 1.50703 * 109.47120 * 275.00241 * 6 5 4 8 8 H 1.07994 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99533 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99881 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00295 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47045 * 90.00176 * 11 9 7 13 13 H 1.48506 * 109.46865 * 210.00079 * 11 9 7 14 14 H 1.48498 * 109.47277 * 329.99548 * 11 9 7 15 15 S 1.65598 * 119.99938 * 95.00472 * 5 4 3 16 16 O 1.42099 * 106.40010 * 156.46054 * 15 5 4 17 17 O 1.42098 * 106.40311 * 23.53768 * 15 5 4 18 18 N 1.65601 * 107.21655 * 269.99415 * 15 5 4 19 19 C 1.47336 * 121.36783 * 90.00137 * 18 15 5 20 20 C 1.53101 * 107.88947 * 118.18643 * 19 18 15 21 21 C 1.49971 * 110.40544 * 45.48649 * 20 19 18 22 22 C 1.29620 * 124.58341 * 341.00043 * 21 20 19 23 23 Cl 1.73606 * 118.18153 * 180.83386 * 22 21 20 24 24 C 1.47001 * 121.37422 * 270.02276 * 18 15 5 25 25 H 1.09005 * 109.46969 * 59.99494 * 1 2 3 26 26 H 1.08992 * 109.47521 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47096 * 300.00451 * 1 2 3 28 28 H 1.09005 * 109.46889 * 59.99573 * 3 2 1 29 29 H 1.08995 * 109.47408 * 299.99968 * 3 2 1 30 30 H 1.09000 * 109.46613 * 305.00549 * 4 3 2 31 31 H 1.08998 * 109.47342 * 185.00252 * 4 3 2 32 32 H 1.09000 * 109.46953 * 35.00593 * 6 5 4 33 33 H 1.09000 * 109.46660 * 154.99804 * 6 5 4 34 34 H 0.96998 * 120.00319 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.77854 * 237.78656 * 19 18 15 36 36 H 1.09004 * 109.77720 * 358.59227 * 19 18 15 37 37 H 1.09004 * 109.31424 * 165.76851 * 20 19 18 38 38 H 1.09000 * 109.31546 * 285.19279 * 20 19 18 39 39 H 1.08000 * 117.70835 * 161.02668 * 21 20 19 40 40 H 1.08993 * 109.52118 * 342.86429 * 24 18 15 41 41 H 1.09001 * 109.51897 * 102.98913 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0014 -0.8956 -1.3758 7 6 5.3000 -1.4251 -0.8239 8 1 6.0336 -0.7427 -0.4209 9 6 5.5518 -2.7806 -0.8345 10 7 6.6848 -3.2427 -0.3524 11 14 4.2837 -3.9607 -1.5336 12 1 4.5347 -4.1545 -2.9843 13 1 4.3852 -5.2671 -0.8348 14 1 2.9233 -3.3988 -1.3372 15 16 4.4474 1.5120 -2.5244 16 8 5.3032 0.7102 -3.3268 17 8 4.8443 2.7592 -1.9709 18 7 3.0983 1.8132 -3.4363 19 6 2.2425 2.9839 -3.1762 20 6 2.2628 3.8682 -4.4259 21 6 2.0849 3.0342 -5.6595 22 6 2.2833 1.7545 -5.7174 23 17 2.0482 0.9565 -7.2412 24 6 2.7051 0.9232 -4.5382 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1764 0.0903 32 1 3.1683 -1.3223 -0.8172 33 1 3.9136 -1.1719 -2.4266 34 1 6.8622 -4.1963 -0.3602 35 1 1.2228 2.6573 -2.9720 36 1 2.6296 3.5417 -2.3235 37 1 1.4552 4.5977 -4.3645 38 1 3.2161 4.3937 -4.4802 39 1 1.7699 3.5349 -6.5631 40 1 3.5508 0.2955 -4.8189 41 1 1.8743 0.2938 -4.2192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867596715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:20 Heat of formation + Delta-G solvation = -124.896461 kcal Electronic energy + Delta-G solvation = -27127.098290 eV Core-core repulsion = 23194.685425 eV Total energy + Delta-G solvation = -3932.412865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.090 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67929 -39.06567 -38.42983 -37.37044 -37.03543 -36.89227 -34.55752 -33.54271 -31.97357 -31.34340 -28.84228 -26.94665 -26.16722 -24.59476 -24.27430 -23.20873 -20.65405 -19.36710 -19.07771 -18.63226 -18.27776 -17.58611 -17.07895 -16.80176 -16.67238 -16.43868 -15.88572 -15.77588 -15.64725 -15.25553 -14.87985 -14.49009 -14.16386 -13.93570 -13.78016 -13.63263 -13.50553 -13.38852 -13.35901 -13.12199 -13.01519 -12.89400 -12.69528 -12.48413 -12.47447 -12.15572 -11.99690 -11.88803 -11.85465 -11.77753 -11.67416 -10.75416 -10.45403 -10.22162 -9.86755 -9.74934 -8.26574 -6.30395 -0.52346 0.88940 1.19692 1.37398 1.39979 1.50208 1.93683 2.37406 2.47472 3.00480 3.09304 3.25140 3.46678 3.88771 3.95405 3.99058 4.17717 4.21417 4.31526 4.39993 4.44321 4.49339 4.50922 4.62422 4.67470 4.74925 4.78594 4.85768 4.94186 5.00498 5.06451 5.13974 5.25673 5.35606 5.47910 5.50984 5.54045 5.80545 6.33145 6.44454 6.71718 7.32028 8.90989 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.005249 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.632128 B = 5333.094070 C = 6029.271011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.047 3.953 4 C 0.111 3.889 5 N -0.985 5.985 6 C 0.245 3.755 7 C -0.537 4.537 8 H 0.029 0.971 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.936 3.064 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.230 1.230 15 S 2.791 3.209 16 O -1.006 7.006 17 O -0.997 6.997 18 N -1.003 6.003 19 C 0.105 3.895 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.099 4.099 23 Cl -0.090 7.090 24 C 0.157 3.843 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.138 0.862 40 H 0.085 0.915 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 15.038 -6.817 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.031 4.031 4 C -0.015 4.015 5 N -0.824 5.824 6 C 0.120 3.880 7 C -0.576 4.576 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.759 3.241 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.153 1.153 15 S 2.801 3.199 16 O -0.990 6.990 17 O -0.980 6.980 18 N -0.845 5.845 19 C -0.019 4.019 20 C -0.137 4.137 21 C -0.135 4.135 22 C -0.127 4.127 23 Cl -0.062 7.062 24 C 0.031 3.969 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.103 0.897 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.957 14.957 -7.058 25.158 hybrid contribution -0.022 -1.050 -0.258 1.082 sum -18.979 13.907 -7.316 24.640 Atomic orbital electron populations 1.22876 0.80124 1.03116 1.00909 1.88023 1.20909 1.28341 1.95516 1.23166 0.92642 0.85180 1.02113 1.21561 0.93773 0.99221 0.86920 1.57390 1.82091 1.16653 1.26277 1.19123 0.96152 0.76449 0.96297 1.21730 1.02983 0.92766 1.40144 0.95311 1.25847 0.97592 1.00240 0.95198 1.70070 1.26192 1.14529 1.48229 0.85879 0.81144 0.78254 0.78857 1.19458 1.20492 1.15304 1.01472 0.73424 0.72193 0.72793 1.93566 1.64516 1.70965 1.69964 1.93498 1.81236 1.44000 1.79310 1.58319 1.45889 1.35984 1.44262 1.21931 0.96073 0.84799 0.99103 1.20912 1.04935 0.97559 0.90332 1.22354 0.97000 0.92836 1.01334 1.22448 1.07733 0.95153 0.87318 1.98374 1.95699 1.81748 1.30344 1.20233 1.01920 0.91147 0.83600 0.92950 0.89966 0.92771 0.89720 0.91718 0.90576 0.87344 0.92059 0.95835 0.92495 0.88062 0.87956 0.85210 0.89818 0.84475 0.89704 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.43 9.02 -148.98 -1.34 -12.77 16 3 C 0.05 1.09 6.28 71.98 0.45 1.54 16 4 C 0.11 3.54 6.13 86.38 0.53 4.07 16 5 N -0.98 -38.85 2.81 -519.81 -1.46 -40.31 16 6 C 0.24 11.54 4.01 85.63 0.34 11.88 16 7 C -0.54 -31.86 9.94 25.60 0.25 -31.61 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.01 0.52 5.47 84.65 0.46 0.98 16 10 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 11 Si 0.94 44.33 27.47 68.60 1.88 46.22 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 15 S 2.79 106.35 6.13 -56.49 -0.35 106.00 16 16 O -1.01 -48.64 15.76 -128.00 -2.02 -50.66 16 17 O -1.00 -38.22 15.43 -128.00 -1.97 -40.20 16 18 N -1.00 -26.76 3.35 -517.10 -1.73 -28.49 16 19 C 0.10 1.79 5.33 86.25 0.46 2.25 16 20 C -0.10 -1.34 6.28 29.65 0.19 -1.16 16 21 C -0.12 -1.93 9.48 26.83 0.25 -1.68 16 22 C -0.10 -2.13 6.34 26.94 0.17 -1.96 16 23 Cl -0.09 -1.97 28.76 -2.72 -0.08 -2.05 16 24 C 0.16 4.08 6.53 85.42 0.56 4.63 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 29 H 0.06 1.20 6.70 -2.39 -0.02 1.18 16 30 H 0.08 2.74 8.11 -2.39 -0.02 2.73 16 31 H 0.11 3.09 6.91 -2.39 -0.02 3.08 16 32 H 0.06 2.79 5.66 -2.39 -0.01 2.78 16 33 H 0.02 1.11 7.04 -2.39 -0.02 1.10 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 35 H 0.10 1.20 7.93 -2.38 -0.02 1.18 16 36 H 0.10 1.67 7.12 -2.38 -0.02 1.66 16 37 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.14 1.78 7.95 -2.91 -0.02 1.76 16 40 H 0.08 2.68 6.98 -2.39 -0.02 2.66 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -80.72 358.01 -0.88 -81.59 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.98 Total: 10.98 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.92 Total: -9.31 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -2.90 Total: -129.81 kcal Atomic # 8 Polarization: -98.29 SS G_CDS: -5.34 Total: -103.63 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: 106.35 SS G_CDS: -0.35 Total: 106.00 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.05 kcal Total: -80.72 -0.88 -81.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867596715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.302 kcal (2) G-P(sol) polarization free energy of solvation -80.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds