Wall clock time and date at job start Tue Mar 31 2020 21:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47118 * 2 1 4 4 O 1.42891 * 109.47480 * 240.00050 * 2 1 3 5 5 C 1.34998 * 117.00351 * 89.99910 * 4 2 1 6 6 O 1.21694 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.41751 * 120.00261 * 180.02562 * 5 4 2 8 8 S 1.75827 * 125.45790 * 0.02562 * 7 5 4 9 9 C 1.75649 * 91.49282 * 180.02562 * 8 7 5 10 10 C 1.32871 * 110.86707 * 0.02562 * 9 8 7 11 11 C 1.39676 * 115.27818 * 359.72104 * 10 9 8 12 12 C 1.40498 * 123.36241 * 180.29748 * 11 10 9 13 13 H 1.08001 * 119.99940 * 154.83620 * 12 11 10 14 14 C 1.40339 * 120.00066 * 334.82733 * 12 11 10 15 15 N 1.30615 * 120.00025 * 349.95971 * 14 12 11 16 16 Si 1.86800 * 119.99820 * 169.95521 * 14 12 11 17 17 H 1.48495 * 109.47422 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47175 * 120.00632 * 16 14 12 19 19 H 1.48507 * 109.47108 * 240.00222 * 16 14 12 20 20 C 1.50708 * 109.46893 * 119.99779 * 2 1 3 21 21 O 1.20762 * 119.99393 * 105.00344 * 20 2 1 22 22 C 1.50693 * 120.00107 * 284.99912 * 20 2 1 23 23 C 1.53182 * 109.54531 * 274.82305 * 22 20 2 24 24 C 1.53100 * 109.15355 * 183.24135 * 23 22 20 25 25 O 1.42902 * 109.49152 * 57.47662 * 24 23 22 26 26 C 1.42898 * 114.09830 * 298.88805 * 25 24 23 27 27 C 1.53095 * 109.41432 * 61.15127 * 26 25 24 28 28 H 1.08997 * 109.46908 * 299.99974 * 1 2 3 29 29 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46953 * 59.99709 * 1 2 3 31 31 H 1.08003 * 124.56284 * 179.97438 * 9 8 7 32 32 H 1.08000 * 122.35957 * 179.97438 * 10 9 8 33 33 H 0.97007 * 119.99966 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.54385 * 35.00130 * 22 20 2 35 35 H 1.08994 * 109.51941 * 303.06146 * 23 22 20 36 36 H 1.09004 * 109.52028 * 63.24853 * 23 22 20 37 37 H 1.08997 * 109.41170 * 297.49295 * 24 23 22 38 38 H 1.09006 * 109.48985 * 177.51135 * 24 23 22 39 39 H 1.09003 * 109.47981 * 301.17329 * 26 25 24 40 40 H 1.08993 * 109.49395 * 181.14516 * 26 25 24 41 41 H 1.09006 * 109.52030 * 182.48809 * 27 26 25 42 42 H 1.08995 * 109.57425 * 62.33285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2107 0.0792 -2.2685 6 8 1.9902 1.2755 -2.2376 7 6 2.6821 -0.5240 -3.4616 8 16 3.0455 -2.2321 -3.6664 9 6 3.5142 -1.9788 -5.3401 10 6 3.3930 -0.6993 -5.6771 11 6 2.9282 0.1428 -4.6643 12 6 2.7314 1.5232 -4.8368 13 1 2.0221 2.0494 -4.2151 14 6 3.4567 2.2184 -5.8167 15 7 4.4491 1.6335 -6.4324 16 14 3.0027 3.9801 -6.2405 17 1 1.8509 4.4087 -5.4069 18 1 4.1630 4.8679 -5.9747 19 1 2.6336 4.0645 -7.6765 20 6 2.0323 -0.7104 1.2306 21 8 2.4888 -1.8248 1.1403 22 6 1.9650 -0.0302 2.5735 23 6 3.2023 0.8528 2.7633 24 6 3.1652 1.4756 4.1615 25 8 3.1007 0.4394 5.1434 26 6 1.9395 -0.3874 5.0437 27 6 1.9283 -1.0868 3.6819 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 3.8557 -2.7581 -6.0054 32 1 3.6329 -0.3367 -6.6657 33 1 4.9506 2.1142 -7.1095 34 1 1.0666 0.5848 2.6262 35 1 4.1019 0.2463 2.6598 36 1 3.2053 1.6420 2.0115 37 1 2.2872 2.1154 4.2499 38 1 4.0654 2.0700 4.3188 39 1 1.0454 0.2280 5.1436 40 1 1.9564 -1.1353 5.8363 41 1 1.0211 -1.6835 3.5863 42 1 2.8008 -1.7344 3.5968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:11 Heat of formation + Delta-G solvation = -158.227393 kcal Electronic energy + Delta-G solvation = -26963.449882 eV Core-core repulsion = 22999.731778 eV Total energy + Delta-G solvation = -3963.718104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50880 -39.31086 -38.32184 -36.80384 -35.07867 -33.98364 -33.29182 -31.64952 -31.31627 -29.15110 -26.85655 -26.51695 -24.35339 -23.70027 -22.67621 -21.19165 -20.29021 -19.22443 -18.86413 -17.85293 -16.73013 -16.51844 -16.25471 -16.06162 -15.51030 -15.38286 -15.19124 -14.97345 -14.55510 -14.36611 -13.89722 -13.71020 -13.44348 -13.15040 -12.67972 -12.59148 -12.55912 -12.33565 -12.14973 -11.83523 -11.72315 -11.56958 -11.53943 -11.24268 -11.16008 -11.06006 -10.92218 -10.72535 -10.48785 -10.33734 -10.07482 -9.92516 -9.74509 -9.35256 -9.15852 -8.86124 -7.59604 -7.26518 -7.21666 -4.72633 1.87873 1.97461 2.84219 2.89319 2.98829 3.14149 3.33857 3.57823 3.64006 3.67699 3.74589 4.14055 4.28792 4.41188 4.48913 4.71526 4.79928 4.95184 5.08054 5.14212 5.17173 5.22049 5.30564 5.37736 5.41042 5.42279 5.56275 5.61071 5.78453 5.84676 5.92055 6.02655 6.04144 6.22518 6.62787 6.73020 6.92792 6.98907 7.13179 7.39624 7.46688 7.59265 7.69307 8.18220 8.38608 8.50161 9.24834 9.66752 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003093 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.079278 B = 9051.729495 C =10202.868155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.043 3.957 3 H 0.104 0.896 4 O -0.346 6.346 5 C 0.531 3.469 6 O -0.550 6.550 7 C -0.412 4.412 8 S -0.007 6.007 9 C -0.200 4.200 10 C -0.111 4.111 11 C 0.143 3.857 12 C -0.362 4.362 13 H 0.114 0.886 14 C 0.064 3.936 15 N -0.763 5.763 16 Si 0.928 3.072 17 H -0.252 1.252 18 H -0.268 1.268 19 H -0.267 1.267 20 C 0.362 3.638 21 O -0.423 6.423 22 C -0.133 4.133 23 C -0.148 4.148 24 C 0.065 3.935 25 O -0.383 6.383 26 C 0.063 3.937 27 C -0.145 4.145 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.292 0.708 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 1.030 12.440 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.015 4.015 3 H 0.121 0.879 4 O -0.265 6.265 5 C 0.389 3.611 6 O -0.447 6.447 7 C -0.528 4.528 8 S 0.250 5.750 9 C -0.335 4.335 10 C -0.144 4.144 11 C 0.132 3.868 12 C -0.392 4.392 13 H 0.132 0.868 14 C -0.160 4.160 15 N -0.386 5.386 16 Si 0.750 3.250 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.192 1.192 20 C 0.234 3.766 21 O -0.293 6.293 22 C -0.152 4.152 23 C -0.186 4.186 24 C -0.012 4.012 25 O -0.302 6.302 26 C -0.014 4.014 27 C -0.183 4.183 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.026 -0.528 13.334 13.938 hybrid contribution -0.209 2.032 -1.528 2.551 sum -4.235 1.504 11.805 12.632 Atomic orbital electron populations 1.22083 0.93004 1.03134 1.03489 1.22331 0.95682 0.98667 0.84790 0.87883 1.86397 1.79014 1.41663 1.19454 1.18351 0.76363 0.84674 0.81755 1.90695 1.54664 1.15565 1.83737 1.20982 1.40130 0.95510 0.96191 1.83403 1.73114 1.10121 1.08386 1.25307 1.08813 1.00215 0.99140 1.20577 1.00715 0.91599 1.01508 1.16922 0.87866 0.93981 0.88073 1.20244 1.15472 0.92896 1.10619 0.86840 1.26469 0.93402 1.02504 0.93577 1.69676 1.12621 1.38955 1.17381 0.85905 0.80397 0.79486 0.79191 1.17456 1.19273 1.19219 1.24587 0.74422 0.87136 0.90429 1.90399 1.32068 1.18962 1.87842 1.21732 1.00966 0.98669 0.93806 1.22171 0.97507 0.99964 0.98924 1.22571 1.02484 0.89372 0.86771 1.87943 1.43812 1.45000 1.53417 1.22583 0.88184 0.93715 0.96898 1.22126 1.04377 0.97892 0.93905 0.91185 0.91633 0.90444 0.84182 0.83805 0.89708 0.88237 0.90182 0.89640 0.92782 0.88306 0.93021 0.88554 0.90426 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.49 37.16 0.35 -1.95 16 2 C 0.04 0.75 2.86 -27.88 -0.08 0.67 16 3 H 0.10 1.79 7.11 -51.93 -0.37 1.42 16 4 O -0.35 -7.88 9.10 -47.96 -0.44 -8.32 16 5 C 0.53 13.52 7.69 32.07 0.25 13.77 16 6 O -0.55 -14.39 13.57 -19.41 -0.26 -14.65 16 7 C -0.41 -10.82 6.36 -37.69 -0.24 -11.06 16 8 S -0.01 -0.16 23.02 -107.50 -2.47 -2.63 16 9 C -0.20 -4.40 11.11 28.88 0.32 -4.08 16 10 C -0.11 -2.69 8.81 -40.90 -0.36 -3.05 16 11 C 0.14 3.76 5.53 -107.96 -0.60 3.17 16 12 C -0.36 -9.40 8.40 -37.94 -0.32 -9.71 16 13 H 0.11 3.05 6.07 -52.49 -0.32 2.73 16 14 C 0.06 1.49 5.37 -17.28 -0.09 1.39 16 15 N -0.76 -17.69 10.86 55.57 0.60 -17.08 16 16 Si 0.93 17.45 29.57 -169.99 -5.03 12.43 16 17 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 20 C 0.36 5.66 5.57 -29.03 -0.16 5.50 16 21 O -0.42 -8.10 16.24 -13.51 -0.22 -8.32 16 22 C -0.13 -1.48 2.53 -91.59 -0.23 -1.71 16 23 C -0.15 -1.58 5.41 -26.59 -0.14 -1.73 16 24 C 0.06 0.59 6.84 37.21 0.25 0.84 16 25 O -0.38 -4.13 10.77 -35.23 -0.38 -4.51 16 26 C 0.06 0.55 6.84 37.21 0.25 0.80 16 27 C -0.15 -1.51 5.02 -26.59 -0.13 -1.64 16 28 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.14 2.58 8.06 -52.48 -0.42 2.16 16 32 H 0.14 3.40 6.37 -52.49 -0.33 3.06 16 33 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 34 H 0.10 0.88 7.57 -51.93 -0.39 0.48 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -30.89 364.39 -9.21 -40.10 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.57 Total: 6.28 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.93 Total: -8.78 kcal Atomic # 7 Polarization: -17.69 SS G_CDS: 0.60 Total: -17.08 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.30 Total: -35.79 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.47 Total: -2.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.89 -9.21 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.129 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds