Wall clock time and date at job start Tue Mar 31 2020 21:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47118 * 2 1 4 4 O 1.42891 * 109.47480 * 240.00050 * 2 1 3 5 5 C 1.34998 * 117.00351 * 89.99910 * 4 2 1 6 6 O 1.21694 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.41751 * 120.00261 * 180.02562 * 5 4 2 8 8 S 1.75827 * 125.45790 * 0.02562 * 7 5 4 9 9 C 1.75649 * 91.49282 * 180.02562 * 8 7 5 10 10 C 1.32871 * 110.86707 * 0.02562 * 9 8 7 11 11 C 1.39676 * 115.27818 * 359.72104 * 10 9 8 12 12 C 1.40498 * 123.36241 * 180.29748 * 11 10 9 13 13 H 1.08001 * 119.99940 * 154.83620 * 12 11 10 14 14 C 1.40339 * 120.00066 * 334.82733 * 12 11 10 15 15 N 1.30615 * 120.00025 * 349.95971 * 14 12 11 16 16 Si 1.86800 * 119.99820 * 169.95521 * 14 12 11 17 17 H 1.48495 * 109.47422 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47175 * 120.00632 * 16 14 12 19 19 H 1.48507 * 109.47108 * 240.00222 * 16 14 12 20 20 C 1.50708 * 109.46893 * 119.99779 * 2 1 3 21 21 O 1.20762 * 119.99393 * 105.00344 * 20 2 1 22 22 C 1.50693 * 120.00107 * 284.99912 * 20 2 1 23 23 C 1.53182 * 109.54531 * 274.82305 * 22 20 2 24 24 C 1.53100 * 109.15355 * 183.24135 * 23 22 20 25 25 O 1.42902 * 109.49152 * 57.47662 * 24 23 22 26 26 C 1.42898 * 114.09830 * 298.88805 * 25 24 23 27 27 C 1.53095 * 109.41432 * 61.15127 * 26 25 24 28 28 H 1.08997 * 109.46908 * 299.99974 * 1 2 3 29 29 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46953 * 59.99709 * 1 2 3 31 31 H 1.08003 * 124.56284 * 179.97438 * 9 8 7 32 32 H 1.08000 * 122.35957 * 179.97438 * 10 9 8 33 33 H 0.97007 * 119.99966 * 180.02562 * 15 14 12 34 34 H 1.09001 * 109.54385 * 35.00130 * 22 20 2 35 35 H 1.08994 * 109.51941 * 303.06146 * 23 22 20 36 36 H 1.09004 * 109.52028 * 63.24853 * 23 22 20 37 37 H 1.08997 * 109.41170 * 297.49295 * 24 23 22 38 38 H 1.09006 * 109.48985 * 177.51135 * 24 23 22 39 39 H 1.09003 * 109.47981 * 301.17329 * 26 25 24 40 40 H 1.08993 * 109.49395 * 181.14516 * 26 25 24 41 41 H 1.09006 * 109.52030 * 182.48809 * 27 26 25 42 42 H 1.08995 * 109.57425 * 62.33285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2107 0.0792 -2.2685 6 8 1.9902 1.2755 -2.2376 7 6 2.6821 -0.5240 -3.4616 8 16 3.0455 -2.2321 -3.6664 9 6 3.5142 -1.9788 -5.3401 10 6 3.3930 -0.6993 -5.6771 11 6 2.9282 0.1428 -4.6643 12 6 2.7314 1.5232 -4.8368 13 1 2.0221 2.0494 -4.2151 14 6 3.4567 2.2184 -5.8167 15 7 4.4491 1.6335 -6.4324 16 14 3.0027 3.9801 -6.2405 17 1 1.8509 4.4087 -5.4069 18 1 4.1630 4.8679 -5.9747 19 1 2.6336 4.0645 -7.6765 20 6 2.0323 -0.7104 1.2306 21 8 2.4888 -1.8248 1.1403 22 6 1.9650 -0.0302 2.5735 23 6 3.2023 0.8528 2.7633 24 6 3.1652 1.4756 4.1615 25 8 3.1007 0.4394 5.1434 26 6 1.9395 -0.3874 5.0437 27 6 1.9283 -1.0868 3.6819 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 3.8557 -2.7581 -6.0054 32 1 3.6329 -0.3367 -6.6657 33 1 4.9506 2.1142 -7.1095 34 1 1.0666 0.5848 2.6262 35 1 4.1019 0.2463 2.6598 36 1 3.2053 1.6420 2.0115 37 1 2.2872 2.1154 4.2499 38 1 4.0654 2.0700 4.3188 39 1 1.0454 0.2280 5.1436 40 1 1.9564 -1.1353 5.8363 41 1 1.0211 -1.6835 3.5863 42 1 2.8008 -1.7344 3.5968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:10 Heat of formation + Delta-G solvation = -175.025761 kcal Electronic energy + Delta-G solvation = -26964.178314 eV Core-core repulsion = 22999.731778 eV Total energy + Delta-G solvation = -3964.446536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81323 -40.75998 -39.50343 -38.60638 -36.89487 -35.12613 -34.95965 -32.97213 -32.10542 -31.00020 -28.71852 -27.51053 -25.62343 -24.62482 -24.26747 -22.64366 -21.58290 -20.72154 -20.43116 -19.57502 -18.42335 -17.69887 -17.46160 -17.11996 -17.04791 -16.90077 -16.71340 -16.00846 -15.77588 -15.61160 -15.53750 -14.79522 -14.64801 -14.53348 -14.30687 -14.05152 -13.90930 -13.69444 -13.44089 -13.30677 -13.19350 -13.02623 -12.87476 -12.75565 -12.34362 -12.32447 -12.23890 -12.04037 -11.76315 -11.69805 -11.51255 -11.48234 -11.14815 -10.89141 -10.79482 -10.29788 -9.48237 -9.15469 -9.00224 -6.66150 0.02277 0.70928 1.31179 1.31447 1.34878 1.51086 1.73690 1.84890 1.91791 2.13226 2.28348 2.87091 2.99614 3.17785 3.53344 3.62316 3.82518 3.89683 3.91960 4.00588 4.24433 4.27356 4.34822 4.43882 4.46723 4.58357 4.61958 4.66644 4.73074 4.80326 4.85039 4.96266 5.01296 5.04358 5.06294 5.10151 5.20134 5.30199 5.53893 5.61545 5.80014 6.24610 6.26587 6.32626 6.44493 6.59497 7.35900 7.92408 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003093 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.079278 B = 9051.729495 C =10202.868155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.024 3.976 3 H 0.103 0.897 4 O -0.361 6.361 5 C 0.526 3.474 6 O -0.571 6.571 7 C -0.457 4.457 8 S 0.000 6.000 9 C -0.179 4.179 10 C -0.133 4.133 11 C 0.118 3.882 12 C -0.387 4.387 13 H 0.094 0.906 14 C 0.032 3.968 15 N -0.775 5.775 16 Si 0.997 3.003 17 H -0.264 1.264 18 H -0.257 1.257 19 H -0.245 1.245 20 C 0.371 3.629 21 O -0.467 6.467 22 C -0.124 4.124 23 C -0.149 4.149 24 C 0.067 3.933 25 O -0.404 6.404 26 C 0.064 3.936 27 C -0.143 4.143 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.182 0.818 32 H 0.148 0.852 33 H 0.308 0.692 34 H 0.136 0.864 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 2.324 12.960 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 H 0.120 0.880 4 O -0.280 6.280 5 C 0.384 3.616 6 O -0.470 6.470 7 C -0.572 4.572 8 S 0.256 5.744 9 C -0.313 4.313 10 C -0.165 4.165 11 C 0.107 3.893 12 C -0.417 4.417 13 H 0.112 0.888 14 C -0.191 4.191 15 N -0.398 5.398 16 Si 0.816 3.184 17 H -0.187 1.187 18 H -0.181 1.181 19 H -0.169 1.169 20 C 0.246 3.754 21 O -0.339 6.339 22 C -0.143 4.143 23 C -0.187 4.187 24 C -0.009 4.009 25 O -0.323 6.323 26 C -0.012 4.012 27 C -0.181 4.181 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.199 0.801 32 H 0.165 0.835 33 H 0.120 0.880 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.657 0.742 13.861 14.641 hybrid contribution 0.034 1.594 -1.692 2.325 sum -4.623 2.336 12.169 13.226 Atomic orbital electron populations 1.22076 0.90458 1.03539 1.04900 1.22924 0.97951 0.98596 0.83795 0.87964 1.86338 1.79183 1.42177 1.20341 1.18388 0.76213 0.84543 0.82433 1.90644 1.55730 1.16256 1.84418 1.21408 1.41626 0.97272 0.96942 1.83217 1.73236 1.08483 1.09477 1.25715 1.06445 1.00472 0.98702 1.20573 1.02451 0.92210 1.01263 1.17347 0.88354 0.94800 0.88833 1.20343 1.16177 0.93243 1.11941 0.88795 1.27249 0.92773 1.06388 0.92643 1.69637 1.12353 1.40736 1.17065 0.84917 0.79810 0.74036 0.79682 1.18748 1.18130 1.16902 1.25062 0.72568 0.86336 0.91474 1.90389 1.34106 1.20907 1.88504 1.21800 1.02723 0.98994 0.90750 1.22208 0.96160 0.99638 1.00685 1.22670 1.04247 0.89142 0.84879 1.87925 1.44994 1.45610 1.53756 1.22721 0.88556 0.94119 0.95840 1.22135 1.03691 0.97537 0.94765 0.86339 0.91694 0.92398 0.80123 0.83490 0.88026 0.84624 0.92679 0.89322 0.90253 0.87355 0.90424 0.87277 0.89316 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.49 71.98 0.68 -3.62 16 2 C 0.02 0.86 2.86 29.85 0.09 0.94 16 3 H 0.10 3.64 7.11 -2.39 -0.02 3.62 16 4 O -0.36 -17.19 9.10 -52.80 -0.48 -17.67 16 5 C 0.53 28.07 7.69 68.69 0.53 28.60 16 6 O -0.57 -31.40 13.57 19.20 0.26 -31.14 16 7 C -0.46 -24.93 6.36 23.49 0.15 -24.78 16 8 S 0.00 -0.01 23.02 -56.49 -1.30 -1.31 16 9 C -0.18 -7.75 11.11 66.64 0.74 -7.01 16 10 C -0.13 -6.46 8.81 21.44 0.19 -6.27 16 11 C 0.12 6.40 5.53 -22.03 -0.12 6.28 16 12 C -0.39 -20.74 8.40 23.33 0.20 -20.54 16 13 H 0.09 5.29 6.07 -2.91 -0.02 5.28 16 14 C 0.03 1.48 5.37 85.39 0.46 1.93 16 15 N -0.77 -35.45 10.86 21.89 0.24 -35.21 16 16 Si 1.00 35.13 29.57 68.60 2.03 37.15 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 18 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 19 H -0.25 -7.77 7.11 99.48 0.71 -7.07 16 20 C 0.37 11.67 5.57 29.10 0.16 11.83 16 21 O -0.47 -18.51 16.24 17.19 0.28 -18.23 16 22 C -0.12 -2.58 2.53 -11.42 -0.03 -2.61 16 23 C -0.15 -3.06 5.41 30.69 0.17 -2.90 16 24 C 0.07 1.06 6.84 72.02 0.49 1.55 16 25 O -0.40 -7.86 10.77 -148.98 -1.60 -9.46 16 26 C 0.06 0.94 6.84 72.01 0.49 1.43 16 27 C -0.14 -2.77 5.02 30.68 0.15 -2.62 16 28 H 0.12 2.12 7.58 -2.39 -0.02 2.11 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.18 6.19 8.06 -2.91 -0.02 6.17 16 32 H 0.15 6.94 6.37 -2.91 -0.02 6.92 16 33 H 0.31 12.13 8.29 -92.70 -0.77 11.36 16 34 H 0.14 1.86 7.57 -2.39 -0.02 1.84 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.06 1.41 7.77 -2.39 -0.02 1.39 16 Total: -1.00 -71.11 364.39 4.81 -66.29 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.05 Total: 27.34 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.35 Total: -17.77 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.24 Total: -35.21 kcal Atomic # 8 Polarization: -74.96 SS G_CDS: -1.54 Total: -76.50 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.15 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.30 Total: -1.31 kcal Total: -71.11 4.81 -66.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.734 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds