Wall clock time and date at job start Tue Mar 31 2020 21:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47478 * 2 1 4 4 O 1.42903 * 109.46915 * 120.00156 * 2 1 3 5 5 C 1.35004 * 116.99767 * 270.00205 * 4 2 1 6 6 O 1.21690 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.41756 * 120.00177 * 179.97438 * 5 4 2 8 8 S 1.75832 * 125.45216 * 359.97438 * 7 5 4 9 9 C 1.75650 * 91.49161 * 180.02562 * 8 7 5 10 10 C 1.32879 * 110.86617 * 359.75550 * 9 8 7 11 11 C 1.39672 * 115.27552 * 0.43175 * 10 9 8 12 12 C 1.40498 * 123.36249 * 179.82937 * 11 10 9 13 13 H 1.08007 * 120.00333 * 204.90831 * 12 11 10 14 14 C 1.40340 * 120.00300 * 24.90281 * 12 11 10 15 15 N 1.30621 * 120.00254 * 197.58960 * 14 12 11 16 16 Si 1.86806 * 119.99432 * 17.59564 * 14 12 11 17 17 H 1.48500 * 109.46758 * 263.17117 * 16 14 12 18 18 H 1.48493 * 109.47164 * 23.17177 * 16 14 12 19 19 H 1.48495 * 109.46750 * 143.17381 * 16 14 12 20 20 C 1.50698 * 109.47080 * 239.99899 * 2 1 3 21 21 O 1.20765 * 119.99985 * 259.99980 * 20 2 1 22 22 C 1.50693 * 119.99995 * 80.00635 * 20 2 1 23 23 C 1.53180 * 109.54325 * 274.81645 * 22 20 2 24 24 C 1.53102 * 109.16042 * 183.24141 * 23 22 20 25 25 O 1.42897 * 109.48807 * 57.47748 * 24 23 22 26 26 C 1.42909 * 114.09794 * 298.88907 * 25 24 23 27 27 C 1.53094 * 109.41272 * 61.15622 * 26 25 24 28 28 H 1.09002 * 109.47335 * 300.00365 * 1 2 3 29 29 H 1.08998 * 109.46727 * 59.99933 * 1 2 3 30 30 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 31 31 H 1.07993 * 124.56916 * 179.97438 * 9 8 7 32 32 H 1.08001 * 122.36110 * 180.21889 * 10 9 8 33 33 H 0.96995 * 119.99946 * 353.07911 * 15 14 12 34 34 H 1.08996 * 109.54946 * 34.99444 * 22 20 2 35 35 H 1.08992 * 109.52521 * 303.06413 * 23 22 20 36 36 H 1.09008 * 109.51794 * 63.24969 * 23 22 20 37 37 H 1.09007 * 109.40313 * 297.49572 * 24 23 22 38 38 H 1.08998 * 109.48463 * 177.51076 * 24 23 22 39 39 H 1.08994 * 109.48088 * 301.17408 * 26 25 24 40 40 H 1.08998 * 109.49185 * 181.14422 * 26 25 24 41 41 H 1.08998 * 109.52367 * 182.48659 * 27 26 25 42 42 H 1.09001 * 109.57584 * 62.33111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2105 0.0791 2.2687 6 8 1.9900 1.2755 2.2377 7 6 2.6818 -0.5240 3.4618 8 16 3.0450 -2.2322 3.6666 9 6 3.5121 -1.9792 5.3408 10 6 3.3950 -0.6989 5.6766 11 6 2.9316 0.1434 4.6634 12 6 2.7414 1.5250 4.8338 13 1 2.0359 2.0540 4.2101 14 6 3.4679 2.2177 5.8145 15 7 3.0675 3.3950 6.2142 16 14 5.0077 1.4559 6.5482 17 1 4.6674 0.7899 7.8311 18 1 5.5634 0.4547 5.6028 19 1 6.0163 2.5177 6.7940 20 6 2.0323 -0.7104 -1.2304 21 8 2.4048 -1.8568 -1.1560 22 6 2.0699 0.0097 -2.5536 23 6 0.7022 -0.0983 -3.2349 24 6 0.7732 0.5655 -4.6126 25 8 1.7998 -0.0556 -5.3887 26 6 3.1074 0.0567 -4.8233 27 6 3.1308 -0.6295 -3.4550 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8523 -2.7586 6.0065 32 1 3.6376 -0.3358 6.6644 33 1 2.3287 3.8344 5.7648 34 1 2.3142 1.0593 -2.3908 35 1 0.4351 -1.1486 -3.3513 36 1 -0.0490 0.4040 -2.6253 37 1 0.9989 1.6252 -4.4928 38 1 -0.1847 0.4529 -5.1203 39 1 3.3637 1.1096 -4.7063 40 1 3.8312 -0.4224 -5.4826 41 1 4.1149 -0.5068 -3.0027 42 1 2.9150 -1.6912 -3.5751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:15 Heat of formation + Delta-G solvation = -157.291576 kcal Electronic energy + Delta-G solvation = -27002.148731 eV Core-core repulsion = 23038.471207 eV Total energy + Delta-G solvation = -3963.677524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58550 -39.38524 -38.39563 -37.06062 -35.17947 -34.06829 -33.60318 -31.83961 -31.17564 -29.29087 -27.00559 -26.69837 -24.26329 -23.84928 -22.35164 -21.40927 -20.41400 -19.46288 -19.31893 -18.07540 -17.00607 -16.61236 -16.38682 -16.19686 -15.63655 -15.37287 -15.11973 -14.99008 -14.84920 -14.26555 -13.92387 -13.71872 -13.50676 -13.37773 -13.26647 -12.95255 -12.45559 -12.41693 -12.14593 -11.99233 -11.71814 -11.71279 -11.59290 -11.39940 -11.23929 -10.98218 -10.93902 -10.68531 -10.25990 -10.18793 -10.04667 -9.98046 -9.71146 -9.46409 -9.22372 -8.91738 -7.96835 -7.70512 -7.43183 -4.84884 1.63004 1.90407 2.82686 2.88454 3.10262 3.24678 3.27430 3.41033 3.44050 3.58962 3.69860 4.06050 4.22800 4.36348 4.43173 4.64356 4.77067 4.91369 4.92369 5.10554 5.11921 5.18062 5.23797 5.26418 5.35171 5.37264 5.52800 5.57521 5.72097 5.73906 5.79983 5.86852 5.98425 6.12160 6.19184 6.61586 6.75426 6.88427 7.06651 7.08748 7.21723 7.51363 7.54784 7.88128 8.21167 8.38794 9.15565 9.53044 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.508131 B = 9610.584517 C =10174.719350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.044 3.956 3 H 0.102 0.898 4 O -0.347 6.347 5 C 0.530 3.470 6 O -0.547 6.547 7 C -0.415 4.415 8 S 0.023 5.977 9 C -0.173 4.173 10 C -0.170 4.170 11 C 0.113 3.887 12 C -0.408 4.408 13 H 0.112 0.888 14 C 0.033 3.967 15 N -0.768 5.768 16 Si 1.065 2.935 17 H -0.270 1.270 18 H -0.254 1.254 19 H -0.279 1.279 20 C 0.364 3.636 21 O -0.423 6.423 22 C -0.134 4.134 23 C -0.148 4.148 24 C 0.063 3.937 25 O -0.383 6.383 26 C 0.063 3.937 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.297 0.703 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -3.168 -13.145 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 H 0.120 0.880 4 O -0.267 6.267 5 C 0.387 3.613 6 O -0.444 6.444 7 C -0.531 4.531 8 S 0.281 5.719 9 C -0.308 4.308 10 C -0.204 4.204 11 C 0.102 3.898 12 C -0.438 4.438 13 H 0.129 0.871 14 C -0.192 4.192 15 N -0.388 5.388 16 Si 0.889 3.111 17 H -0.196 1.196 18 H -0.178 1.178 19 H -0.206 1.206 20 C 0.236 3.764 21 O -0.293 6.293 22 C -0.153 4.153 23 C -0.185 4.185 24 C -0.013 4.013 25 O -0.302 6.302 26 C -0.014 4.014 27 C -0.183 4.183 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.456 -4.504 -13.127 13.886 hybrid contribution -1.302 1.469 0.211 1.974 sum -1.757 -3.035 -12.916 13.383 Atomic orbital electron populations 1.22166 0.93015 1.03208 1.03538 1.22357 0.95776 0.98578 0.84651 0.88003 1.86380 1.79070 1.41704 1.19499 1.18289 0.76550 0.84698 0.81773 1.90716 1.54408 1.15585 1.83688 1.20824 1.40834 0.95250 0.96144 1.83482 1.71706 1.10159 1.06548 1.25314 1.05912 0.99769 0.99813 1.20272 1.06358 0.93663 1.00102 1.16881 0.90086 0.94309 0.88498 1.21233 1.16414 0.93169 1.13010 0.87064 1.27799 1.02537 0.95607 0.93276 1.70402 1.23189 1.14063 1.31175 0.83765 0.73849 0.76199 0.77286 1.19597 1.17805 1.20589 1.24571 0.73678 0.88086 0.90061 1.90392 1.33799 1.18046 1.87045 1.21735 0.97773 1.01905 0.93913 1.22253 0.95632 1.03412 0.97251 1.22576 0.91944 0.95901 0.90925 1.87939 1.16159 1.78262 1.47811 1.22597 0.84864 0.99795 0.94144 1.22125 0.98910 1.01879 0.95392 0.90510 0.90927 0.91549 0.83379 0.85702 0.89016 0.88174 0.90240 0.89597 0.92751 0.88388 0.92901 0.88454 0.90290 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.38 37.16 0.35 -1.99 16 2 C 0.04 0.76 2.86 -27.89 -0.08 0.68 16 3 H 0.10 1.77 7.11 -51.93 -0.37 1.40 16 4 O -0.35 -7.75 9.13 -47.88 -0.44 -8.18 16 5 C 0.53 13.30 7.69 32.08 0.25 13.55 16 6 O -0.55 -14.47 13.56 -19.41 -0.26 -14.73 16 7 C -0.41 -10.52 6.36 -37.69 -0.24 -10.76 16 8 S 0.02 0.49 23.02 -107.50 -2.47 -1.98 16 9 C -0.17 -3.45 11.11 28.88 0.32 -3.13 16 10 C -0.17 -3.77 7.24 -40.89 -0.30 -4.07 16 11 C 0.11 2.86 5.16 -107.96 -0.56 2.30 16 12 C -0.41 -10.76 8.79 -37.94 -0.33 -11.09 16 13 H 0.11 3.19 6.24 -52.48 -0.33 2.87 16 14 C 0.03 0.82 5.47 -17.28 -0.09 0.72 16 15 N -0.77 -18.95 13.64 55.57 0.76 -18.20 16 16 Si 1.07 21.71 24.91 -169.99 -4.23 17.48 16 17 H -0.27 -5.01 6.81 56.52 0.38 -4.63 16 18 H -0.25 -5.20 6.57 56.52 0.37 -4.83 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 C 0.36 5.58 5.57 -29.04 -0.16 5.42 16 21 O -0.42 -7.87 16.29 -13.13 -0.21 -8.09 16 22 C -0.13 -1.48 2.54 -91.59 -0.23 -1.72 16 23 C -0.15 -1.35 5.26 -26.59 -0.14 -1.49 16 24 C 0.06 0.51 6.84 37.21 0.25 0.77 16 25 O -0.38 -3.95 10.77 -35.23 -0.38 -4.32 16 26 C 0.06 0.56 6.84 37.21 0.25 0.81 16 27 C -0.15 -1.55 5.02 -26.59 -0.13 -1.68 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.76 5.78 -51.93 -0.30 0.46 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.13 2.55 4.52 -52.49 -0.24 2.31 16 33 H 0.30 7.21 8.73 -40.82 -0.36 6.85 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.67 5.80 -51.92 -0.30 0.37 16 37 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -30.90 355.24 -8.10 -39.00 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.37 Total: 5.33 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.84 Total: -11.66 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.76 Total: -18.20 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.29 Total: -35.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.23 Total: 17.48 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.47 Total: -1.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.90 -8.10 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.292 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds