Wall clock time and date at job start Tue Mar 31 2020 21:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47478 * 2 1 4 4 O 1.42903 * 109.46915 * 120.00156 * 2 1 3 5 5 C 1.35004 * 116.99767 * 270.00205 * 4 2 1 6 6 O 1.21690 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.41756 * 120.00177 * 179.97438 * 5 4 2 8 8 S 1.75832 * 125.45216 * 359.97438 * 7 5 4 9 9 C 1.75650 * 91.49161 * 180.02562 * 8 7 5 10 10 C 1.32879 * 110.86617 * 359.75550 * 9 8 7 11 11 C 1.39672 * 115.27552 * 0.43175 * 10 9 8 12 12 C 1.40498 * 123.36249 * 179.82937 * 11 10 9 13 13 H 1.08007 * 120.00333 * 204.90831 * 12 11 10 14 14 C 1.40340 * 120.00300 * 24.90281 * 12 11 10 15 15 N 1.30621 * 120.00254 * 197.58960 * 14 12 11 16 16 Si 1.86806 * 119.99432 * 17.59564 * 14 12 11 17 17 H 1.48500 * 109.46758 * 263.17117 * 16 14 12 18 18 H 1.48493 * 109.47164 * 23.17177 * 16 14 12 19 19 H 1.48495 * 109.46750 * 143.17381 * 16 14 12 20 20 C 1.50698 * 109.47080 * 239.99899 * 2 1 3 21 21 O 1.20765 * 119.99985 * 259.99980 * 20 2 1 22 22 C 1.50693 * 119.99995 * 80.00635 * 20 2 1 23 23 C 1.53180 * 109.54325 * 274.81645 * 22 20 2 24 24 C 1.53102 * 109.16042 * 183.24141 * 23 22 20 25 25 O 1.42897 * 109.48807 * 57.47748 * 24 23 22 26 26 C 1.42909 * 114.09794 * 298.88907 * 25 24 23 27 27 C 1.53094 * 109.41272 * 61.15622 * 26 25 24 28 28 H 1.09002 * 109.47335 * 300.00365 * 1 2 3 29 29 H 1.08998 * 109.46727 * 59.99933 * 1 2 3 30 30 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 31 31 H 1.07993 * 124.56916 * 179.97438 * 9 8 7 32 32 H 1.08001 * 122.36110 * 180.21889 * 10 9 8 33 33 H 0.96995 * 119.99946 * 353.07911 * 15 14 12 34 34 H 1.08996 * 109.54946 * 34.99444 * 22 20 2 35 35 H 1.08992 * 109.52521 * 303.06413 * 23 22 20 36 36 H 1.09008 * 109.51794 * 63.24969 * 23 22 20 37 37 H 1.09007 * 109.40313 * 297.49572 * 24 23 22 38 38 H 1.08998 * 109.48463 * 177.51076 * 24 23 22 39 39 H 1.08994 * 109.48088 * 301.17408 * 26 25 24 40 40 H 1.08998 * 109.49185 * 181.14422 * 26 25 24 41 41 H 1.08998 * 109.52367 * 182.48659 * 27 26 25 42 42 H 1.09001 * 109.57584 * 62.33111 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2105 0.0791 2.2687 6 8 1.9900 1.2755 2.2377 7 6 2.6818 -0.5240 3.4618 8 16 3.0450 -2.2322 3.6666 9 6 3.5121 -1.9792 5.3408 10 6 3.3950 -0.6989 5.6766 11 6 2.9316 0.1434 4.6634 12 6 2.7414 1.5250 4.8338 13 1 2.0359 2.0540 4.2101 14 6 3.4679 2.2177 5.8145 15 7 3.0675 3.3950 6.2142 16 14 5.0077 1.4559 6.5482 17 1 4.6674 0.7899 7.8311 18 1 5.5634 0.4547 5.6028 19 1 6.0163 2.5177 6.7940 20 6 2.0323 -0.7104 -1.2304 21 8 2.4048 -1.8568 -1.1560 22 6 2.0699 0.0097 -2.5536 23 6 0.7022 -0.0983 -3.2349 24 6 0.7732 0.5655 -4.6126 25 8 1.7998 -0.0556 -5.3887 26 6 3.1074 0.0567 -4.8233 27 6 3.1308 -0.6295 -3.4550 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8523 -2.7586 6.0065 32 1 3.6376 -0.3358 6.6644 33 1 2.3287 3.8344 5.7648 34 1 2.3142 1.0593 -2.3908 35 1 0.4351 -1.1486 -3.3513 36 1 -0.0490 0.4040 -2.6253 37 1 0.9989 1.6252 -4.4928 38 1 -0.1847 0.4529 -5.1203 39 1 3.3637 1.1096 -4.7063 40 1 3.8312 -0.4224 -5.4826 41 1 4.1149 -0.5068 -3.0027 42 1 2.9150 -1.6912 -3.5751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:14 Heat of formation + Delta-G solvation = -175.723928 kcal Electronic energy + Delta-G solvation = -27002.948018 eV Core-core repulsion = 23038.471207 eV Total energy + Delta-G solvation = -3964.476811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89621 -40.85075 -39.54692 -38.80585 -37.01374 -35.44325 -35.02841 -33.07982 -32.03334 -31.06349 -28.86910 -27.70108 -25.54253 -24.58926 -24.01813 -22.97374 -21.54097 -21.15132 -20.68412 -19.75890 -18.78838 -17.80338 -17.60817 -17.13023 -17.02351 -16.81198 -16.68962 -16.26174 -15.84748 -15.59525 -15.37518 -15.25334 -14.84828 -14.77761 -14.49503 -14.20494 -13.88456 -13.75859 -13.63381 -13.50433 -13.20228 -13.02989 -12.74889 -12.68542 -12.47511 -12.33451 -12.04469 -11.80613 -11.76521 -11.72650 -11.52180 -11.47331 -11.13799 -10.94694 -10.83651 -10.32933 -9.84910 -9.53026 -9.26601 -6.80493 -0.15857 0.64503 1.13707 1.25442 1.46258 1.53495 1.62563 1.76995 1.82905 2.03805 2.20868 2.81013 2.97032 3.02025 3.48543 3.60610 3.77724 3.81644 3.88702 3.95246 4.19626 4.23476 4.23987 4.30451 4.44188 4.47364 4.53735 4.58293 4.63911 4.71407 4.78903 4.86078 4.93697 5.02088 5.03669 5.08700 5.15989 5.16254 5.29651 5.37494 5.64178 5.98594 6.19971 6.22193 6.25738 6.49344 7.24786 7.61477 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.508131 B = 9610.584517 C =10174.719350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 H 0.099 0.901 4 O -0.358 6.358 5 C 0.524 3.476 6 O -0.574 6.574 7 C -0.455 4.455 8 S 0.041 5.959 9 C -0.139 4.139 10 C -0.199 4.199 11 C 0.108 3.892 12 C -0.444 4.444 13 H 0.069 0.931 14 C 0.009 3.991 15 N -0.783 5.783 16 Si 1.096 2.904 17 H -0.230 1.230 18 H -0.256 1.256 19 H -0.272 1.272 20 C 0.374 3.626 21 O -0.462 6.462 22 C -0.128 4.128 23 C -0.145 4.145 24 C 0.062 3.938 25 O -0.401 6.401 26 C 0.066 3.934 27 C -0.145 4.145 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.203 0.797 32 H 0.147 0.853 33 H 0.288 0.712 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -4.365 -13.385 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 H 0.117 0.883 4 O -0.277 6.277 5 C 0.382 3.618 6 O -0.473 6.473 7 C -0.571 4.571 8 S 0.300 5.700 9 C -0.274 4.274 10 C -0.231 4.231 11 C 0.097 3.903 12 C -0.475 4.475 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.404 5.404 16 Si 0.912 3.088 17 H -0.155 1.155 18 H -0.180 1.180 19 H -0.198 1.198 20 C 0.248 3.752 21 O -0.334 6.334 22 C -0.147 4.147 23 C -0.182 4.182 24 C -0.015 4.015 25 O -0.320 6.320 26 C -0.011 4.011 27 C -0.183 4.183 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.220 0.780 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.246 -5.693 -13.384 14.547 hybrid contribution -1.608 1.759 0.122 2.387 sum -1.362 -3.934 -13.263 13.901 Atomic orbital electron populations 1.22150 0.90801 1.03587 1.04653 1.22928 0.97837 0.98503 0.83858 0.88279 1.86328 1.79097 1.42025 1.20245 1.18495 0.76097 0.84506 0.82665 1.90689 1.55435 1.16722 1.84436 1.21386 1.41125 0.97972 0.96616 1.83338 1.71287 1.07115 1.08288 1.25885 1.02426 1.00165 0.98943 1.20357 1.08346 0.94046 1.00381 1.17248 0.89374 0.94280 0.89435 1.21097 1.17828 0.94168 1.14384 0.91259 1.29004 1.04050 0.95279 0.92856 1.70468 1.23446 1.14657 1.31808 0.83462 0.70823 0.76169 0.78326 1.15454 1.17996 1.19760 1.24957 0.71947 0.87461 0.90787 1.90382 1.35690 1.19677 1.87618 1.21798 0.99492 1.02186 0.91233 1.22289 0.94455 1.03257 0.98205 1.22749 0.92364 0.96447 0.89913 1.87924 1.16874 1.78745 1.48459 1.22658 0.84856 1.00640 0.92916 1.22129 0.98503 1.01026 0.96596 0.92688 0.86504 0.91482 0.78013 0.83586 0.90033 0.86161 0.91346 0.87965 0.91067 0.86589 0.91220 0.87262 0.90603 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.38 71.98 0.68 -3.78 16 2 C 0.03 0.90 2.86 29.85 0.09 0.99 16 3 H 0.10 3.55 7.11 -2.39 -0.02 3.53 16 4 O -0.36 -16.51 9.13 -52.97 -0.48 -16.99 16 5 C 0.52 27.47 7.69 68.69 0.53 28.00 16 6 O -0.57 -32.20 13.56 19.21 0.26 -31.94 16 7 C -0.46 -23.55 6.36 23.49 0.15 -23.40 16 8 S 0.04 1.75 23.02 -56.49 -1.30 0.45 16 9 C -0.14 -5.04 11.11 66.64 0.74 -4.30 16 10 C -0.20 -8.38 7.24 21.44 0.16 -8.22 16 11 C 0.11 5.52 5.16 -22.03 -0.11 5.41 16 12 C -0.44 -24.49 8.79 23.33 0.21 -24.29 16 13 H 0.07 4.31 6.24 -2.91 -0.02 4.29 16 14 C 0.01 0.44 5.47 85.38 0.47 0.91 16 15 N -0.78 -39.85 13.64 21.89 0.30 -39.56 16 16 Si 1.10 42.17 24.91 68.60 1.71 43.87 16 17 H -0.23 -7.46 6.81 99.48 0.68 -6.78 16 18 H -0.26 -9.87 6.57 99.48 0.65 -9.22 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 20 C 0.37 11.48 5.57 29.10 0.16 11.64 16 21 O -0.46 -17.50 16.29 16.82 0.27 -17.23 16 22 C -0.13 -2.67 2.54 -11.42 -0.03 -2.70 16 23 C -0.14 -2.33 5.26 30.69 0.16 -2.17 16 24 C 0.06 0.82 6.84 72.02 0.49 1.32 16 25 O -0.40 -7.35 10.77 -148.98 -1.60 -8.95 16 26 C 0.07 1.03 6.84 72.01 0.49 1.52 16 27 C -0.14 -2.95 5.02 30.69 0.15 -2.80 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.12 2.24 5.78 -2.39 -0.01 2.22 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.20 5.10 8.06 -2.91 -0.02 5.07 16 32 H 0.15 5.49 4.52 -2.91 -0.01 5.47 16 33 H 0.29 14.79 8.73 -92.71 -0.81 13.98 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.28 5.80 -2.38 -0.01 1.27 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.59 7.77 -2.39 -0.02 1.57 16 Total: -1.00 -71.91 355.24 4.42 -67.49 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.94 Total: 24.73 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.33 Total: -21.87 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.30 Total: -39.56 kcal Atomic # 8 Polarization: -73.57 SS G_CDS: -1.55 Total: -75.12 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.71 Total: 43.87 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.30 Total: 0.45 kcal Total: -71.91 4.42 -67.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.233 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds