Wall clock time and date at job start Tue Mar 31 2020 20:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00463 * 2 1 4 4 O 1.20826 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00093 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46848 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.46875 * 180.02562 * 6 5 3 8 8 C 1.36808 * 119.99389 * 269.99493 * 7 6 5 9 9 H 1.07999 * 119.99493 * 142.17190 * 8 7 6 10 10 C 1.39088 * 120.00448 * 322.17304 * 8 7 6 11 11 N 1.31338 * 119.99850 * 340.48690 * 10 8 7 12 12 Si 1.86800 * 120.00248 * 160.48508 * 10 8 7 13 13 H 1.48503 * 109.46955 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46837 * 120.00006 * 12 10 8 15 15 H 1.48495 * 109.47433 * 240.00024 * 12 10 8 16 16 C 1.34773 * 120.00485 * 90.00101 * 7 6 5 17 17 O 1.21622 * 119.99835 * 5.27915 * 16 7 6 18 18 C 1.47474 * 120.00049 * 185.28464 * 16 7 6 19 19 C 1.40013 * 120.03960 * 272.76710 * 18 16 7 20 20 F 1.35103 * 120.02300 * 0.02562 * 19 18 16 21 21 C 1.37954 * 119.95830 * 180.02562 * 19 18 16 22 22 C 1.39663 * 120.03883 * 0.02874 * 21 19 18 23 23 C 1.43205 * 119.95683 * 179.97438 * 22 21 19 24 24 N 9.56386 * 166.73086 * 32.60028 * 5 1 2 25 25 C 1.39661 * 120.08744 * 0.24552 * 22 21 19 26 26 C 1.37952 * 120.03865 * 359.45265 * 25 22 21 27 27 F 1.35100 * 120.01971 * 180.27356 * 26 25 22 28 28 H 1.09001 * 109.47251 * 300.00475 * 1 2 3 29 29 H 1.09007 * 109.46722 * 59.99690 * 1 2 3 30 30 H 1.08992 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46855 * 60.00545 * 5 3 2 32 32 H 1.08998 * 109.47454 * 300.00008 * 5 3 2 33 33 H 1.08991 * 109.47392 * 60.00261 * 6 5 3 34 34 H 1.09007 * 109.46893 * 299.99807 * 6 5 3 35 35 H 0.97001 * 120.00010 * 185.13429 * 11 10 8 36 36 H 1.08004 * 119.98132 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.97816 * 179.70092 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1463 2.8540 1.1859 9 1 7.0848 2.3286 1.2840 10 6 5.6321 3.5664 2.2641 11 7 4.7282 4.4981 2.0645 12 14 6.2270 3.1982 3.9961 13 1 7.2403 2.1134 3.9512 14 1 6.8361 4.4200 4.5805 15 1 5.0782 2.7687 4.8334 16 6 6.1362 2.8542 -1.1661 17 8 5.5277 2.9198 -2.2171 18 6 7.6104 2.8136 -1.1688 19 6 8.3445 4.0005 -1.0554 20 9 7.7028 5.1840 -0.9429 21 6 9.7234 3.9606 -1.0586 22 6 10.3872 2.7373 -1.1755 23 6 11.8187 2.6980 -1.1793 24 7 12.9542 2.6669 -1.1815 25 6 9.6567 1.5529 -1.2945 26 6 8.2777 1.5882 -1.2854 27 9 7.5715 0.4417 -1.3949 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 3.6102 3.2358 0.8910 34 1 3.6108 3.2363 -0.8890 35 1 4.4242 5.0456 2.8053 36 1 10.2901 4.8759 -0.9716 37 1 10.1718 0.6085 -1.3897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:30 Heat of formation + Delta-G solvation = -141.946132 kcal Electronic energy + Delta-G solvation = -29114.983004 eV Core-core repulsion = 24494.590179 eV Total energy + Delta-G solvation = -4620.392825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.83464 -48.63820 -40.12280 -39.43891 -38.33681 -36.41072 -36.19123 -35.14346 -32.17447 -31.76617 -30.50694 -30.44120 -27.59220 -25.48324 -25.18045 -23.18672 -22.84791 -20.50145 -19.66034 -19.47396 -18.05536 -17.35749 -17.26114 -16.39063 -16.36382 -16.21058 -16.12496 -15.64579 -15.59190 -15.15245 -15.00653 -14.65279 -14.44149 -13.93403 -13.82645 -13.63973 -13.56358 -13.46433 -13.13423 -12.85355 -12.35246 -12.30441 -12.22108 -12.04468 -11.82124 -11.68648 -11.60407 -11.35013 -11.15470 -10.94096 -10.58557 -10.50408 -10.22883 -10.08504 -9.43303 -9.04566 -8.79558 -8.71232 -7.80479 -6.57633 -4.32008 0.42255 0.98822 2.44602 2.61052 2.64928 2.95225 2.98077 3.11857 3.14532 3.39349 3.42957 3.56148 3.92101 4.09308 4.30759 4.45236 4.70130 4.77458 4.90875 5.15675 5.21715 5.27744 5.30872 5.37331 5.59337 5.72087 5.77791 5.84268 5.92169 6.00319 6.00960 6.18167 6.62258 6.67220 6.74197 7.14717 7.26128 7.30900 7.60984 8.09606 8.12777 8.79658 9.11363 9.56422 10.43570 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004101 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.605023 B = 6825.640644 C = 7819.507488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.123 3.877 7 N -0.412 5.412 8 C -0.360 4.360 9 H 0.093 0.907 10 C 0.054 3.946 11 N -0.844 5.844 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.503 3.497 17 O -0.580 6.580 18 C -0.105 4.105 19 C 0.172 3.828 20 F -0.108 7.108 21 C -0.122 4.122 22 C 0.022 3.978 23 C 0.265 3.735 24 N -0.411 5.411 25 C -0.122 4.122 26 C 0.152 3.848 27 F -0.117 7.117 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.276 0.724 36 H 0.153 0.847 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -6.263 -1.663 6.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.164 4.164 6 C -0.001 4.001 7 N -0.127 5.127 8 C -0.487 4.487 9 H 0.110 0.890 10 C -0.155 4.155 11 N -0.478 5.478 12 Si 0.739 3.261 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.202 1.202 16 C 0.289 3.711 17 O -0.465 6.465 18 C -0.111 4.111 19 C 0.151 3.849 20 F -0.086 7.086 21 C -0.144 4.144 22 C 0.018 3.982 23 C -0.051 4.051 24 N -0.086 5.086 25 C -0.144 4.144 26 C 0.132 3.868 27 F -0.096 7.096 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.280 -5.861 -2.024 7.015 hybrid contribution -0.656 -0.049 1.059 1.247 sum 2.624 -5.910 -0.965 6.538 Atomic orbital electron populations 1.23176 0.77262 1.03079 1.02371 1.86534 1.22808 1.34296 1.84625 1.23978 0.92281 0.80949 0.71817 1.90659 1.67249 1.36202 1.44990 1.21856 0.86125 1.02901 1.05473 1.21316 0.81228 0.91419 1.06114 1.43257 1.04819 1.60383 1.04284 1.19414 1.07793 1.33582 0.87946 0.88962 1.25432 0.95949 0.93658 1.00451 1.69793 1.28665 1.16147 1.33173 0.86083 0.79108 0.79018 0.81928 1.18781 1.20313 1.20167 1.17820 0.85115 0.82876 0.85258 1.90716 1.68324 1.55693 1.31813 1.20347 0.97263 0.91827 1.01659 1.16936 0.88863 0.80905 0.98152 1.91628 1.81730 1.42815 1.92382 1.20984 0.92309 0.98358 1.02704 1.15190 0.84455 0.93223 1.05314 1.25313 0.92149 0.93836 0.93776 1.81257 1.11747 1.07115 1.08500 1.20901 0.91599 0.98844 1.03022 1.16950 0.88423 0.81031 1.00416 1.91567 1.78565 1.46545 1.92888 0.92131 0.92144 0.88579 0.88386 0.87451 0.86025 0.91042 0.91339 0.82951 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.73 10.56 -39.26 -0.41 -6.15 16 3 C 0.47 8.62 7.96 36.00 0.29 8.91 16 4 O -0.50 -10.60 15.73 -18.75 -0.29 -10.90 16 5 C -0.12 -2.36 6.14 -27.88 -0.17 -2.53 16 6 C 0.12 2.80 4.33 -4.04 -0.02 2.78 16 7 N -0.41 -9.57 2.51 -116.02 -0.29 -9.86 16 8 C -0.36 -8.28 8.68 -15.02 -0.13 -8.41 16 9 H 0.09 2.03 7.32 -52.49 -0.38 1.64 16 10 C 0.05 1.26 5.00 -17.45 -0.09 1.17 16 11 N -0.84 -20.99 11.35 55.50 0.63 -20.36 16 12 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 13 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 14 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 15 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 16 C 0.50 11.50 6.32 -12.50 -0.08 11.42 16 17 O -0.58 -14.70 16.66 5.26 0.09 -14.61 16 18 C -0.11 -1.97 4.05 -104.80 -0.42 -2.40 16 19 C 0.17 2.90 7.28 -39.02 -0.28 2.62 16 20 F -0.11 -2.08 16.82 2.25 0.04 -2.04 16 21 C -0.12 -1.54 9.71 -39.15 -0.38 -1.92 16 22 C 0.02 0.26 5.73 -106.91 -0.61 -0.36 16 23 C 0.26 3.13 15.31 -22.47 -0.34 2.79 16 24 N -0.41 -5.58 18.54 41.84 0.78 -4.80 16 25 C -0.12 -1.45 9.71 -39.16 -0.38 -1.83 16 26 C 0.15 2.38 7.28 -39.02 -0.28 2.10 16 27 F -0.12 -1.93 16.82 2.25 0.04 -1.89 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.12 3.01 5.42 -51.93 -0.28 2.73 16 34 H 0.07 1.75 7.31 -51.93 -0.38 1.37 16 35 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -29.49 353.12 -4.12 -33.61 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.14 Total: 2.87 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: -1.84 Total: 15.82 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.11 Total: -35.02 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.62 Total: -31.66 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.49 -4.12 -33.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.337 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds