Wall clock time and date at job start Tue Mar 31 2020 20:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00463 * 2 1 4 4 O 1.20826 * 119.99810 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00093 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46848 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.46875 * 180.02562 * 6 5 3 8 8 C 1.36808 * 119.99389 * 269.99493 * 7 6 5 9 9 H 1.07999 * 119.99493 * 142.17190 * 8 7 6 10 10 C 1.39088 * 120.00448 * 322.17304 * 8 7 6 11 11 N 1.31338 * 119.99850 * 340.48690 * 10 8 7 12 12 Si 1.86800 * 120.00248 * 160.48508 * 10 8 7 13 13 H 1.48503 * 109.46955 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46837 * 120.00006 * 12 10 8 15 15 H 1.48495 * 109.47433 * 240.00024 * 12 10 8 16 16 C 1.34773 * 120.00485 * 90.00101 * 7 6 5 17 17 O 1.21622 * 119.99835 * 5.27915 * 16 7 6 18 18 C 1.47474 * 120.00049 * 185.28464 * 16 7 6 19 19 C 1.40013 * 120.03960 * 272.76710 * 18 16 7 20 20 F 1.35103 * 120.02300 * 0.02562 * 19 18 16 21 21 C 1.37954 * 119.95830 * 180.02562 * 19 18 16 22 22 C 1.39663 * 120.03883 * 0.02874 * 21 19 18 23 23 C 1.43205 * 119.95683 * 179.97438 * 22 21 19 24 24 N 9.56386 * 166.73086 * 32.60028 * 5 1 2 25 25 C 1.39661 * 120.08744 * 0.24552 * 22 21 19 26 26 C 1.37952 * 120.03865 * 359.45265 * 25 22 21 27 27 F 1.35100 * 120.01971 * 180.27356 * 26 25 22 28 28 H 1.09001 * 109.47251 * 300.00475 * 1 2 3 29 29 H 1.09007 * 109.46722 * 59.99690 * 1 2 3 30 30 H 1.08992 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46855 * 60.00545 * 5 3 2 32 32 H 1.08998 * 109.47454 * 300.00008 * 5 3 2 33 33 H 1.08991 * 109.47392 * 60.00261 * 6 5 3 34 34 H 1.09007 * 109.46893 * 299.99807 * 6 5 3 35 35 H 0.97001 * 120.00010 * 185.13429 * 11 10 8 36 36 H 1.08004 * 119.98132 * 179.97438 * 21 19 18 37 37 H 1.07996 * 119.97816 * 179.70092 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1463 2.8540 1.1859 9 1 7.0848 2.3286 1.2840 10 6 5.6321 3.5664 2.2641 11 7 4.7282 4.4981 2.0645 12 14 6.2270 3.1982 3.9961 13 1 7.2403 2.1134 3.9512 14 1 6.8361 4.4200 4.5805 15 1 5.0782 2.7687 4.8334 16 6 6.1362 2.8542 -1.1661 17 8 5.5277 2.9198 -2.2171 18 6 7.6104 2.8136 -1.1688 19 6 8.3445 4.0005 -1.0554 20 9 7.7028 5.1840 -0.9429 21 6 9.7234 3.9606 -1.0586 22 6 10.3872 2.7373 -1.1755 23 6 11.8187 2.6980 -1.1793 24 7 12.9542 2.6669 -1.1815 25 6 9.6567 1.5529 -1.2945 26 6 8.2777 1.5882 -1.2854 27 9 7.5715 0.4417 -1.3949 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8908 33 1 3.6102 3.2358 0.8910 34 1 3.6108 3.2363 -0.8890 35 1 4.4242 5.0456 2.8053 36 1 10.2901 4.8759 -0.9716 37 1 10.1718 0.6085 -1.3897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:29 Heat of formation + Delta-G solvation = -157.994007 kcal Electronic energy + Delta-G solvation = -29115.678892 eV Core-core repulsion = 24494.590179 eV Total energy + Delta-G solvation = -4621.088714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.06808 -50.01395 -41.59672 -40.88414 -39.73871 -37.70434 -37.41075 -36.92217 -33.91775 -33.22191 -31.92690 -31.63190 -28.76377 -27.09778 -26.65724 -24.68182 -24.01238 -21.96199 -21.34638 -20.65643 -19.66463 -18.79251 -18.55892 -17.95498 -17.61647 -17.55922 -17.53234 -17.06427 -16.84772 -16.61493 -16.34096 -16.28807 -15.87565 -15.34599 -15.14733 -14.96671 -14.86915 -14.54390 -14.48965 -14.27728 -13.82821 -13.74309 -13.42941 -13.36244 -13.14306 -12.96199 -12.93854 -12.81778 -12.74577 -12.64481 -12.07237 -11.96981 -11.80367 -11.63065 -11.20268 -10.74837 -10.06181 -9.91330 -9.62740 -8.35061 -6.15261 -0.72932 -0.13689 1.11790 1.35873 1.46885 1.49379 1.53698 1.58202 1.62629 1.80063 2.28104 2.33192 2.51537 2.74859 2.92156 2.98234 3.31186 3.73119 3.74505 3.79835 3.89253 4.11497 4.16647 4.25310 4.31664 4.32214 4.56269 4.63661 4.68789 4.69644 4.81035 4.88378 4.92206 5.24488 5.34795 5.45839 5.49307 5.83382 6.29875 6.30379 6.68555 7.00310 7.33860 7.79576 8.67646 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004101 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.605023 B = 6825.640644 C = 7819.507488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.127 3.873 7 N -0.421 5.421 8 C -0.362 4.362 9 H 0.105 0.895 10 C 0.013 3.987 11 N -0.884 5.884 12 Si 0.977 3.023 13 H -0.247 1.247 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.494 3.506 17 O -0.620 6.620 18 C -0.138 4.138 19 C 0.147 3.853 20 F -0.132 7.132 21 C -0.095 4.095 22 C 0.043 3.957 23 C 0.290 3.710 24 N -0.430 5.430 25 C -0.090 4.090 26 C 0.143 3.857 27 F -0.126 7.126 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.039 0.961 35 H 0.275 0.725 36 H 0.184 0.816 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -8.273 -0.814 9.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.153 4.153 6 C 0.003 3.997 7 N -0.137 5.137 8 C -0.489 4.489 9 H 0.122 0.878 10 C -0.192 4.192 11 N -0.520 5.520 12 Si 0.800 3.200 13 H -0.170 1.170 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.282 3.718 17 O -0.508 6.508 18 C -0.144 4.144 19 C 0.126 3.874 20 F -0.110 7.110 21 C -0.116 4.116 22 C 0.039 3.961 23 C -0.026 4.026 24 N -0.105 5.105 25 C -0.111 4.111 26 C 0.123 3.877 27 F -0.104 7.104 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.201 0.799 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.746 -7.908 -1.174 9.845 hybrid contribution -1.417 0.548 0.718 1.680 sum 4.329 -7.359 -0.456 8.550 Atomic orbital electron populations 1.23588 0.74724 1.05903 1.02455 1.86503 1.25168 1.32231 1.83825 1.23758 0.92012 0.81332 0.71102 1.90649 1.67832 1.37480 1.46683 1.21630 0.87028 1.00212 1.06394 1.21078 0.81618 0.93620 1.03397 1.43486 1.04882 1.60391 1.04894 1.19717 1.08140 1.33345 0.87701 0.87750 1.26261 0.95947 0.93116 1.03880 1.69923 1.30392 1.17510 1.34157 0.85109 0.78748 0.79024 0.77113 1.16953 1.20494 1.20479 1.18467 0.87198 0.81671 0.84454 1.90663 1.69960 1.57212 1.32948 1.20209 0.94821 0.94122 1.05222 1.17189 0.90257 0.79590 1.00321 1.91564 1.82495 1.44038 1.92931 1.21185 0.90352 1.00116 0.99942 1.15087 0.84331 0.92761 1.03937 1.24910 0.91479 0.93137 0.93059 1.81323 1.12364 1.07778 1.09037 1.21193 0.89706 1.00550 0.99605 1.17048 0.89569 0.79721 1.01363 1.91546 1.79072 1.46678 1.93081 0.92090 0.92149 0.84352 0.87811 0.85961 0.88097 0.94214 0.91457 0.79855 0.79118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.02 10.56 -51.42 -0.54 -11.57 16 3 C 0.47 17.86 7.96 71.24 0.57 18.43 16 4 O -0.54 -23.50 15.73 21.96 0.35 -23.15 16 5 C -0.11 -4.44 6.14 29.85 0.18 -4.26 16 6 C 0.13 6.12 4.33 86.38 0.37 6.50 16 7 N -0.42 -20.36 2.51 -639.23 -1.61 -21.97 16 8 C -0.36 -16.83 8.68 84.12 0.73 -16.10 16 9 H 0.10 4.51 7.32 -2.91 -0.02 4.49 16 10 C 0.01 0.62 5.00 84.97 0.43 1.04 16 11 N -0.88 -45.68 11.35 21.69 0.25 -45.44 16 12 Si 0.98 36.54 29.60 68.60 2.03 38.57 16 13 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 14 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 15 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 16 C 0.49 23.52 6.32 86.68 0.55 24.07 16 17 O -0.62 -33.23 16.66 -4.10 -0.07 -33.30 16 18 C -0.14 -5.19 4.05 -19.98 -0.08 -5.27 16 19 C 0.15 4.88 7.28 22.63 0.16 5.04 16 20 F -0.13 -5.25 16.82 44.97 0.76 -4.50 16 21 C -0.09 -2.12 9.71 22.55 0.22 -1.90 16 22 C 0.04 0.82 5.73 -21.34 -0.12 0.70 16 23 C 0.29 5.58 15.31 88.33 1.35 6.93 16 24 N -0.43 -10.02 18.54 19.00 0.35 -9.66 16 25 C -0.09 -1.78 9.71 22.55 0.22 -1.56 16 26 C 0.14 4.24 7.28 22.63 0.16 4.41 16 27 F -0.13 -3.99 16.82 44.97 0.76 -3.23 16 28 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 29 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 30 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 32 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 33 H 0.10 5.31 5.42 -2.39 -0.01 5.30 16 34 H 0.04 2.11 7.31 -2.38 -0.02 2.09 16 35 H 0.28 13.47 8.31 -92.71 -0.77 12.69 16 36 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -68.46 353.12 9.36 -59.09 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.15 Total: 15.35 kcal Atomic # 6 Polarization: 33.86 SS G_CDS: 5.94 Total: 39.80 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.01 Total: -77.07 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -0.27 Total: -68.02 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 1.51 Total: -7.73 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -68.46 9.36 -59.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.899 kcal (2) G-P(sol) polarization free energy of solvation -68.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds